Wall clock time and date at job start Wed Apr 1 2020 08:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35453 * 126.77428 * 2 1 4 4 C 1.41378 * 103.98502 * 180.09856 * 3 2 1 5 5 C 1.50690 * 126.80293 * 179.88925 * 4 3 2 6 6 C 1.53003 * 109.47120 * 124.71021 * 5 4 3 7 7 C 1.50703 * 109.47050 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99978 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00018 * 179.97438 * 7 6 5 10 10 C 1.47071 * 120.84664 * 354.79378 * 9 7 6 11 11 C 1.52659 * 109.29554 * 233.37960 * 10 9 7 12 12 C 1.53150 * 109.68328 * 306.22851 * 11 10 9 13 13 C 1.52818 * 109.26792 * 60.72202 * 12 11 10 14 14 H 1.09000 * 109.47421 * 58.00550 * 13 12 11 15 15 C 1.53067 * 110.34469 * 178.54651 * 13 12 11 16 16 N 1.47064 * 108.33510 * 175.43835 * 15 13 12 17 17 C 1.36935 * 120.47107 * 126.70666 * 16 15 13 18 18 H 1.08008 * 119.99911 * 331.92163 * 17 16 15 19 19 C 1.38808 * 120.00374 * 151.91748 * 17 16 15 20 20 N 1.31623 * 119.99749 * 341.43160 * 19 17 16 21 21 Si 1.86799 * 120.00330 * 161.43511 * 19 17 16 22 22 H 1.48491 * 109.47404 * 85.16265 * 21 19 17 23 23 H 1.48504 * 109.47254 * 205.16534 * 21 19 17 24 24 H 1.48505 * 109.46908 * 325.16173 * 21 19 17 25 25 C 1.46866 * 119.06267 * 306.68863 * 16 15 13 26 26 C 1.53317 * 109.10199 * 52.64623 * 25 16 15 27 27 C 1.46716 * 120.84594 * 175.06563 * 9 7 6 28 28 H 1.09001 * 109.52614 * 245.21423 * 27 9 7 29 29 N 1.30175 * 106.39346 * 359.62541 * 4 3 2 30 30 O 1.20920 * 111.61027 * 0.24266 * 29 4 3 31 31 H 1.09004 * 109.46899 * 180.29998 * 1 2 3 32 32 H 1.09000 * 109.47160 * 300.29896 * 1 2 3 33 33 H 1.08993 * 109.47611 * 60.29962 * 1 2 3 34 34 H 1.07998 * 128.00806 * 359.96796 * 3 2 1 35 35 H 1.09004 * 109.47064 * 244.71118 * 5 4 3 36 36 H 1.08994 * 109.47414 * 4.70914 * 5 4 3 37 37 H 1.08994 * 109.47204 * 300.00000 * 6 5 4 38 38 H 1.09006 * 109.47008 * 60.00069 * 6 5 4 39 39 H 1.09001 * 109.53558 * 353.28463 * 10 9 7 40 40 H 1.09001 * 109.54402 * 113.54432 * 10 9 7 41 41 H 1.08993 * 109.51695 * 186.10343 * 11 10 9 42 42 H 1.08993 * 109.28342 * 66.21630 * 11 10 9 43 43 H 1.08996 * 109.50815 * 300.78177 * 12 11 10 44 44 H 1.09006 * 109.53635 * 180.67642 * 12 11 10 45 45 H 1.08997 * 109.69397 * 295.15291 * 15 13 12 46 46 H 1.09007 * 109.68849 * 55.72887 * 15 13 12 47 47 H 0.96998 * 119.99883 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.52897 * 172.52971 * 25 16 15 49 49 H 1.08997 * 109.53449 * 292.68371 * 25 16 15 50 50 H 1.09000 * 109.56072 * 186.05730 * 26 25 16 51 51 H 1.09005 * 109.56048 * 65.73839 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 -0.0024 5 6 4.9210 1.3001 -0.0057 6 6 5.7791 0.8507 1.1786 7 6 7.0791 1.6130 1.1749 8 8 7.2975 2.4352 0.3104 9 7 7.9985 1.3820 2.1328 10 6 7.7083 0.4750 3.2536 11 6 7.9786 1.1981 4.5707 12 6 9.4016 1.7643 4.5656 13 6 9.5435 2.7613 3.4161 14 1 8.8042 3.5542 3.5294 15 6 10.9478 3.3702 3.4101 16 7 11.0718 4.2355 2.2274 17 6 11.4759 5.5372 2.3587 18 1 11.2785 6.0742 3.2749 19 6 12.1393 6.1668 1.3145 20 7 12.7018 5.4498 0.3648 21 14 12.2339 8.0315 1.2572 22 1 13.3844 8.4942 2.0739 23 1 12.4146 8.4750 -0.1485 24 1 10.9776 8.6078 1.8004 25 6 10.7565 3.6835 0.9034 26 6 9.3622 3.0474 0.9441 27 6 9.3124 2.0333 2.0873 28 1 10.0876 1.2804 1.9446 29 7 3.4764 -0.7563 0.0047 30 8 2.3096 -1.0736 0.0061 31 1 -0.3633 -1.0277 0.0054 32 1 -0.3633 0.5185 0.8873 33 1 -0.3634 0.5091 -0.8926 34 1 2.0345 2.1271 -0.0005 35 1 5.4546 1.1047 -0.9359 36 1 4.7162 2.3673 0.0783 37 1 5.2456 1.0461 2.1088 38 1 5.9840 -0.2166 1.0946 39 1 6.6624 0.1706 3.2147 40 1 8.3482 -0.4048 3.1859 41 1 7.8695 0.4984 5.3992 42 1 7.2641 2.0129 4.6872 43 1 10.1161 0.9520 4.4332 44 1 9.5961 2.2697 5.5117 45 1 11.0961 3.9605 4.3143 46 1 11.6925 2.5755 3.3635 47 1 13.1651 5.8897 -0.3650 48 1 10.7708 4.4830 0.1626 49 1 11.4956 2.9276 0.6383 50 1 9.1640 2.5418 -0.0010 51 1 8.6126 3.8213 1.1099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021667452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:00:40 Heat of formation + Delta-G solvation = 49.208657 kcal Electronic energy + Delta-G solvation = -31354.263167 eV Core-core repulsion = 27257.550235 eV Total energy + Delta-G solvation = -4096.712933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -45.15998 -40.47616 -37.89286 -35.82820 -35.49099 -33.84930 -33.01333 -32.56006 -31.56322 -29.90562 -29.39254 -28.15378 -26.06645 -25.50599 -24.13979 -23.26150 -22.52904 -22.18586 -20.41488 -19.97410 -19.33601 -18.75259 -17.84403 -17.50126 -16.72250 -16.33706 -15.77446 -15.68846 -14.79731 -14.63024 -14.56504 -14.33044 -14.09636 -13.82347 -13.76254 -13.67224 -13.50496 -13.16178 -12.91098 -12.74111 -12.53699 -12.42815 -12.35141 -12.19562 -12.02241 -11.71620 -11.27136 -11.17431 -11.07136 -10.91809 -10.88791 -10.79163 -10.47817 -10.30102 -10.24804 -10.18885 -9.87667 -9.78662 -9.59160 -9.36220 -8.67440 -8.36332 -8.19481 -6.58275 -5.71603 -3.13174 1.19552 1.97750 2.82454 2.84511 3.16610 3.42255 3.49040 3.51932 3.94398 4.13488 4.54691 4.59533 4.70202 4.76586 4.83191 4.90935 4.94526 4.96320 5.00968 5.08122 5.15870 5.29180 5.32223 5.35572 5.42901 5.46989 5.47895 5.57546 5.68160 5.73179 5.73506 5.80511 5.89978 5.95110 5.97310 6.07156 6.15102 6.27202 6.41329 6.43548 6.56385 6.74010 6.80327 6.97661 7.03445 7.19901 7.55160 7.67701 7.78288 7.87596 8.04524 8.45030 8.52508 9.28513 9.92428 10.48604 11.36562 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.002419 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.141706 B =11573.167652 C =12708.761184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.232 4.232 4 C 0.026 3.974 5 C -0.026 4.026 6 C -0.135 4.135 7 C 0.511 3.489 8 O -0.524 6.524 9 N -0.609 5.609 10 C 0.108 3.892 11 C -0.133 4.133 12 C -0.114 4.114 13 C -0.114 4.114 14 H 0.070 0.930 15 C 0.156 3.844 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.063 0.937 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.166 3.834 26 C -0.121 4.121 27 C 0.158 3.842 28 H 0.063 0.937 29 N -0.365 5.365 30 O 0.096 5.904 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.018 0.982 47 H 0.253 0.747 48 H 0.085 0.915 49 H 0.014 0.986 50 H 0.070 0.930 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.829 -13.982 4.093 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.253 4.253 4 C -0.133 4.133 5 C -0.065 4.065 6 C -0.176 4.176 7 C 0.299 3.701 8 O -0.400 6.400 9 N -0.342 5.342 10 C -0.016 4.016 11 C -0.171 4.171 12 C -0.152 4.152 13 C -0.135 4.135 14 H 0.088 0.912 15 C 0.029 3.971 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.081 0.919 19 C -0.196 4.196 20 N -0.544 5.544 21 Si 0.729 3.271 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.040 3.960 26 C -0.160 4.160 27 C 0.056 3.944 28 H 0.081 0.919 29 N -0.070 5.070 30 O 0.030 5.970 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.189 0.811 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.035 0.965 47 H 0.063 0.937 48 H 0.103 0.897 49 H 0.032 0.968 50 H 0.089 0.911 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.745 -14.507 3.469 26.369 hybrid contribution -0.242 1.628 0.086 1.648 sum -21.987 -12.879 3.554 25.728 Atomic orbital electron populations 1.20334 0.84079 1.04621 1.04114 1.24514 0.96387 0.86301 1.02796 1.22467 0.91377 1.01118 1.10332 1.23654 0.97496 0.89984 1.02158 1.19755 0.88236 0.98990 0.99490 1.21681 0.94485 1.01546 0.99908 1.20433 0.84950 0.83117 0.81601 1.90810 1.77776 1.33735 1.37698 1.48299 1.15770 1.46095 1.24065 1.21606 1.01102 0.92508 0.86349 1.21813 0.98468 1.00335 0.96472 1.21520 0.95564 0.98948 0.99151 1.22081 1.01255 0.97015 0.93146 0.91196 1.20861 0.91377 0.93267 0.91636 1.44112 1.77338 1.08933 1.01089 1.19123 1.30462 0.86931 1.01766 0.91912 1.25021 0.97328 0.98022 0.99200 1.70058 1.36541 1.33852 1.13982 0.86365 0.77841 0.86015 0.76844 1.21397 1.21563 1.20616 1.20971 0.89851 0.96983 0.88227 1.22608 1.00097 0.97282 0.96011 1.21334 0.81635 0.94269 0.97163 0.91878 1.73832 0.96762 1.16405 1.19971 1.84829 1.11365 1.33189 1.67585 0.89937 0.89177 0.89188 0.81125 0.88904 0.88642 0.89247 0.88797 0.90378 0.91571 0.91105 0.91754 0.92018 0.91757 0.92649 0.96465 0.93683 0.89669 0.96773 0.91121 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 36.01 0.38 0.12 16 2 C -0.04 -0.28 7.49 -35.30 -0.26 -0.55 16 3 C -0.23 -2.02 11.05 -39.38 -0.44 -2.45 16 4 C 0.03 0.28 6.59 -82.11 -0.54 -0.26 16 5 C -0.03 -0.30 5.10 -27.89 -0.14 -0.44 16 6 C -0.14 -1.54 4.09 -27.88 -0.11 -1.65 16 7 C 0.51 7.80 7.63 -10.99 -0.08 7.71 16 8 O -0.52 -9.90 11.53 5.56 0.06 -9.84 16 9 N -0.61 -9.02 2.98 -165.60 -0.49 -9.52 16 10 C 0.11 1.17 6.30 -3.91 -0.02 1.15 16 11 C -0.13 -1.42 6.05 -26.83 -0.16 -1.59 16 12 C -0.11 -1.50 5.24 -26.75 -0.14 -1.64 16 13 C -0.11 -1.99 2.21 -90.54 -0.20 -2.19 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.16 3.29 5.86 -3.70 -0.02 3.27 16 16 N -0.59 -15.33 3.00 -172.25 -0.52 -15.84 16 17 C -0.25 -7.15 9.56 -15.06 -0.14 -7.30 16 18 H 0.06 1.74 7.90 -52.48 -0.41 1.32 16 19 C 0.00 0.09 4.86 -17.43 -0.08 0.00 16 20 N -0.90 -26.99 11.31 55.49 0.63 -26.36 16 21 Si 0.90 22.34 29.59 -169.99 -5.03 17.31 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 25 C 0.17 4.21 5.27 -3.68 -0.02 4.19 16 26 C -0.12 -2.61 3.79 -26.62 -0.10 -2.71 16 27 C 0.16 2.84 2.64 -67.73 -0.18 2.66 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 N -0.37 -4.40 12.06 33.42 0.40 -3.99 16 30 O 0.10 1.00 11.20 17.17 0.19 1.20 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 37 H 0.09 0.88 7.48 -51.93 -0.39 0.50 16 38 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 39 H 0.08 0.69 6.00 -51.93 -0.31 0.38 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 49 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 1.55 6.44 -51.93 -0.33 1.22 16 51 H 0.06 1.55 7.16 -51.93 -0.37 1.17 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -33.70 394.58 -9.53 -43.23 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.45 Total: -0.45 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.28 Total: -1.68 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.02 Total: -55.71 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.26 Total: -8.64 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.70 -9.53 -43.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021667452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.443 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds