Wall clock time and date at job start Wed Apr 1 2020 08:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35453 * 126.77428 * 2 1 4 4 C 1.41378 * 103.98502 * 180.09856 * 3 2 1 5 5 C 1.50690 * 126.80293 * 179.88925 * 4 3 2 6 6 C 1.53003 * 109.47120 * 124.71021 * 5 4 3 7 7 C 1.50703 * 109.47050 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99978 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00018 * 179.97438 * 7 6 5 10 10 C 1.47071 * 120.84664 * 354.79378 * 9 7 6 11 11 C 1.52659 * 109.29554 * 233.37960 * 10 9 7 12 12 C 1.53150 * 109.68328 * 306.22851 * 11 10 9 13 13 C 1.52818 * 109.26792 * 60.72202 * 12 11 10 14 14 H 1.09000 * 109.47421 * 58.00550 * 13 12 11 15 15 C 1.53067 * 110.34469 * 178.54651 * 13 12 11 16 16 N 1.47064 * 108.33510 * 175.43835 * 15 13 12 17 17 C 1.36935 * 120.47107 * 126.70666 * 16 15 13 18 18 H 1.08008 * 119.99911 * 331.92163 * 17 16 15 19 19 C 1.38808 * 120.00374 * 151.91748 * 17 16 15 20 20 N 1.31623 * 119.99749 * 341.43160 * 19 17 16 21 21 Si 1.86799 * 120.00330 * 161.43511 * 19 17 16 22 22 H 1.48491 * 109.47404 * 85.16265 * 21 19 17 23 23 H 1.48504 * 109.47254 * 205.16534 * 21 19 17 24 24 H 1.48505 * 109.46908 * 325.16173 * 21 19 17 25 25 C 1.46866 * 119.06267 * 306.68863 * 16 15 13 26 26 C 1.53317 * 109.10199 * 52.64623 * 25 16 15 27 27 C 1.46716 * 120.84594 * 175.06563 * 9 7 6 28 28 H 1.09001 * 109.52614 * 245.21423 * 27 9 7 29 29 N 1.30175 * 106.39346 * 359.62541 * 4 3 2 30 30 O 1.20920 * 111.61027 * 0.24266 * 29 4 3 31 31 H 1.09004 * 109.46899 * 180.29998 * 1 2 3 32 32 H 1.09000 * 109.47160 * 300.29896 * 1 2 3 33 33 H 1.08993 * 109.47611 * 60.29962 * 1 2 3 34 34 H 1.07998 * 128.00806 * 359.96796 * 3 2 1 35 35 H 1.09004 * 109.47064 * 244.71118 * 5 4 3 36 36 H 1.08994 * 109.47414 * 4.70914 * 5 4 3 37 37 H 1.08994 * 109.47204 * 300.00000 * 6 5 4 38 38 H 1.09006 * 109.47008 * 60.00069 * 6 5 4 39 39 H 1.09001 * 109.53558 * 353.28463 * 10 9 7 40 40 H 1.09001 * 109.54402 * 113.54432 * 10 9 7 41 41 H 1.08993 * 109.51695 * 186.10343 * 11 10 9 42 42 H 1.08993 * 109.28342 * 66.21630 * 11 10 9 43 43 H 1.08996 * 109.50815 * 300.78177 * 12 11 10 44 44 H 1.09006 * 109.53635 * 180.67642 * 12 11 10 45 45 H 1.08997 * 109.69397 * 295.15291 * 15 13 12 46 46 H 1.09007 * 109.68849 * 55.72887 * 15 13 12 47 47 H 0.96998 * 119.99883 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.52897 * 172.52971 * 25 16 15 49 49 H 1.08997 * 109.53449 * 292.68371 * 25 16 15 50 50 H 1.09000 * 109.56072 * 186.05730 * 26 25 16 51 51 H 1.09005 * 109.56048 * 65.73839 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 -0.0024 5 6 4.9210 1.3001 -0.0057 6 6 5.7791 0.8507 1.1786 7 6 7.0791 1.6130 1.1749 8 8 7.2975 2.4352 0.3104 9 7 7.9985 1.3820 2.1328 10 6 7.7083 0.4750 3.2536 11 6 7.9786 1.1981 4.5707 12 6 9.4016 1.7643 4.5656 13 6 9.5435 2.7613 3.4161 14 1 8.8042 3.5542 3.5294 15 6 10.9478 3.3702 3.4101 16 7 11.0718 4.2355 2.2274 17 6 11.4759 5.5372 2.3587 18 1 11.2785 6.0742 3.2749 19 6 12.1393 6.1668 1.3145 20 7 12.7018 5.4498 0.3648 21 14 12.2339 8.0315 1.2572 22 1 13.3844 8.4942 2.0739 23 1 12.4146 8.4750 -0.1485 24 1 10.9776 8.6078 1.8004 25 6 10.7565 3.6835 0.9034 26 6 9.3622 3.0474 0.9441 27 6 9.3124 2.0333 2.0873 28 1 10.0876 1.2804 1.9446 29 7 3.4764 -0.7563 0.0047 30 8 2.3096 -1.0736 0.0061 31 1 -0.3633 -1.0277 0.0054 32 1 -0.3633 0.5185 0.8873 33 1 -0.3634 0.5091 -0.8926 34 1 2.0345 2.1271 -0.0005 35 1 5.4546 1.1047 -0.9359 36 1 4.7162 2.3673 0.0783 37 1 5.2456 1.0461 2.1088 38 1 5.9840 -0.2166 1.0946 39 1 6.6624 0.1706 3.2147 40 1 8.3482 -0.4048 3.1859 41 1 7.8695 0.4984 5.3992 42 1 7.2641 2.0129 4.6872 43 1 10.1161 0.9520 4.4332 44 1 9.5961 2.2697 5.5117 45 1 11.0961 3.9605 4.3143 46 1 11.6925 2.5755 3.3635 47 1 13.1651 5.8897 -0.3650 48 1 10.7708 4.4830 0.1626 49 1 11.4956 2.9276 0.6383 50 1 9.1640 2.5418 -0.0010 51 1 8.6126 3.8213 1.1099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021667452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:00:24 Heat of formation + Delta-G solvation = 29.396379 kcal Electronic energy + Delta-G solvation = -31355.122292 eV Core-core repulsion = 27257.550235 eV Total energy + Delta-G solvation = -4097.572057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -45.89926 -41.77303 -39.30351 -37.39973 -36.37476 -34.64641 -34.36334 -34.01271 -32.75979 -31.58182 -30.93956 -28.63112 -27.49691 -26.90077 -25.50183 -24.10738 -23.95863 -23.76881 -21.66471 -21.20123 -20.65272 -19.88128 -18.71945 -18.60589 -18.22505 -17.55210 -17.08203 -16.86742 -16.66290 -15.78990 -15.57466 -15.55699 -15.36536 -15.16790 -14.94766 -14.69049 -14.47822 -14.12224 -13.94860 -13.85431 -13.77930 -13.62529 -13.49652 -13.25061 -13.10468 -13.08808 -12.90245 -12.69068 -12.57158 -12.37146 -12.22042 -12.06644 -11.95770 -11.86603 -11.82082 -11.65516 -11.44139 -11.09447 -11.00655 -10.55508 -10.23100 -10.10183 -9.49057 -8.69438 -7.89698 -5.35021 0.54641 1.23667 1.41877 1.45052 1.54073 1.64277 1.99713 2.27980 2.48377 3.13683 3.24542 3.42985 3.61278 3.63489 3.81344 3.86042 3.95315 4.05365 4.07478 4.12459 4.19178 4.29243 4.30725 4.41769 4.50094 4.52575 4.56907 4.61928 4.71500 4.77194 4.77330 4.83057 4.86418 4.89102 4.93218 4.95207 4.97154 4.99839 5.12506 5.13462 5.16194 5.27919 5.29362 5.36441 5.48625 5.52192 5.62088 5.62853 5.74125 6.35576 6.51217 7.10991 7.23945 7.33780 7.82921 8.34720 9.16389 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.002419 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.141706 B =11573.167652 C =12708.761184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.025 4.025 3 C -0.244 4.244 4 C 0.014 3.986 5 C -0.022 4.022 6 C -0.118 4.118 7 C 0.504 3.496 8 O -0.570 6.570 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.126 4.126 12 C -0.108 4.108 13 C -0.100 4.100 14 H 0.049 0.951 15 C 0.151 3.849 16 N -0.611 5.611 17 C -0.265 4.265 18 H 0.066 0.934 19 C -0.053 4.053 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.274 1.274 25 C 0.176 3.824 26 C -0.097 4.097 27 C 0.164 3.836 28 H 0.063 0.937 29 N -0.393 5.393 30 O 0.086 5.914 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.190 0.810 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.019 0.981 47 H 0.249 0.751 48 H 0.044 0.956 49 H -0.006 1.006 50 H 0.061 0.939 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.689 -15.382 6.498 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.265 4.265 4 C -0.144 4.144 5 C -0.061 4.061 6 C -0.158 4.158 7 C 0.294 3.706 8 O -0.450 6.450 9 N -0.341 5.341 10 C -0.021 4.021 11 C -0.164 4.164 12 C -0.146 4.146 13 C -0.121 4.121 14 H 0.068 0.932 15 C 0.026 3.974 16 N -0.335 5.335 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.249 4.249 20 N -0.580 5.580 21 Si 0.794 3.206 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.199 1.199 25 C 0.049 3.951 26 C -0.136 4.136 27 C 0.061 3.939 28 H 0.081 0.919 29 N -0.099 5.099 30 O 0.021 5.979 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.208 0.792 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.037 0.963 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.012 0.988 50 H 0.080 0.920 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -24.636 -15.951 5.933 29.942 hybrid contribution 0.602 2.027 -0.664 2.216 sum -24.033 -13.924 5.269 28.271 Atomic orbital electron populations 1.20582 0.80880 1.05915 1.05682 1.25266 0.97949 0.85175 1.00481 1.22754 0.90488 1.02419 1.10889 1.23672 0.97976 0.90065 1.02723 1.19627 0.88630 0.99046 0.98759 1.21580 0.92091 1.01197 1.00954 1.21156 0.86025 0.82666 0.80783 1.90790 1.78853 1.35918 1.39437 1.48342 1.14191 1.46213 1.25343 1.21979 1.03340 0.92025 0.84717 1.21806 0.96142 1.00903 0.97512 1.21502 0.97952 0.97985 0.97207 1.21860 0.97824 0.97463 0.94936 0.93238 1.21058 0.93808 0.92755 0.89802 1.44359 1.77562 1.09178 1.02358 1.19481 1.29775 0.88357 1.01905 0.91583 1.25843 0.97474 1.02463 0.99080 1.70214 1.37707 1.35500 1.14612 0.85312 0.78150 0.80586 0.76538 1.20355 1.21949 1.19878 1.20712 0.91577 0.95164 0.87609 1.22232 0.96404 0.97368 0.97597 1.20986 0.83799 0.93452 0.95694 0.91933 1.73818 0.97799 1.16915 1.21381 1.84786 1.11228 1.34164 1.67675 0.88835 0.87338 0.87612 0.79234 0.90784 0.88859 0.86823 0.87674 0.87488 0.89942 0.87339 0.92192 0.91014 0.90645 0.92342 0.96293 0.94156 0.93715 0.98818 0.92007 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.45 71.24 0.74 0.47 16 2 C -0.03 -0.34 7.49 25.04 0.19 -0.15 16 3 C -0.24 -3.83 11.05 22.40 0.25 -3.58 16 4 C 0.01 0.29 6.59 43.57 0.29 0.57 16 5 C -0.02 -0.50 5.10 29.85 0.15 -0.35 16 6 C -0.12 -2.49 4.09 29.85 0.12 -2.36 16 7 C 0.50 15.14 7.63 87.66 0.67 15.81 16 8 O -0.57 -22.41 11.53 -3.04 -0.03 -22.44 16 9 N -0.61 -17.17 2.98 -796.23 -2.37 -19.54 16 10 C 0.10 1.80 6.30 86.16 0.54 2.35 16 11 C -0.13 -2.15 6.05 30.53 0.18 -1.96 16 12 C -0.11 -2.53 5.24 30.58 0.16 -2.37 16 13 C -0.10 -3.43 2.21 -10.74 -0.02 -3.46 16 14 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 15 C 0.15 6.46 5.86 86.29 0.51 6.97 16 16 N -0.61 -32.87 3.00 -698.89 -2.10 -34.97 16 17 C -0.27 -15.43 9.56 84.03 0.80 -14.63 16 18 H 0.07 3.72 7.90 -2.91 -0.02 3.69 16 19 C -0.05 -3.15 4.86 84.86 0.41 -2.74 16 20 N -0.93 -58.60 11.31 21.65 0.24 -58.36 16 21 Si 0.97 47.21 29.59 68.60 2.03 49.24 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 25 C 0.18 9.50 5.27 86.42 0.46 9.95 16 26 C -0.10 -4.41 3.79 30.66 0.12 -4.30 16 27 C 0.16 5.90 2.64 45.00 0.12 6.02 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 N -0.39 -9.05 12.06 -49.55 -0.60 -9.65 16 30 O 0.09 1.68 11.20 71.62 0.80 2.48 16 31 H 0.09 0.18 8.14 -2.38 -0.02 0.16 16 32 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.07 1.92 8.10 -2.38 -0.02 1.91 16 36 H 0.09 2.10 8.09 -2.39 -0.02 2.09 16 37 H 0.11 1.88 7.48 -2.39 -0.02 1.86 16 38 H 0.11 2.04 8.12 -2.38 -0.02 2.02 16 39 H 0.11 1.37 6.00 -2.39 -0.01 1.35 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 46 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.04 2.74 6.14 -2.39 -0.01 2.73 16 49 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 50 H 0.06 2.90 6.44 -2.39 -0.02 2.89 16 51 H 0.04 2.06 7.16 -2.38 -0.02 2.05 16 Total: -1.00 -78.81 394.58 4.58 -74.23 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.91 Total: 12.75 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 5.68 Total: 6.25 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -4.82 Total: -122.52 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.77 Total: -19.96 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -78.81 4.58 -74.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021667452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.628 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds