Wall clock time and date at job start Wed Apr 1 2020 05:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37996 * 120.82511 * 2 1 4 4 C 1.39126 * 119.26686 * 179.97438 * 3 2 1 5 5 O 1.35497 * 119.52468 * 180.02562 * 4 3 2 6 6 N 1.32435 * 120.94937 * 359.97438 * 4 3 2 7 7 C 1.31638 * 121.79860 * 359.73488 * 6 4 3 8 8 C 1.50697 * 119.68798 * 180.29743 * 7 6 4 9 9 C 1.39568 * 120.62485 * 0.54457 * 7 6 4 10 10 C 1.47616 * 120.49589 * 179.72155 * 9 7 6 11 11 O 1.21588 * 120.00013 * 269.72519 * 10 9 7 12 12 N 1.34773 * 120.00094 * 89.73011 * 10 9 7 13 13 C 1.46502 * 120.00158 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.46963 * 34.99594 * 13 12 10 15 15 C 1.53001 * 109.46624 * 274.99518 * 13 12 10 16 16 C 1.53005 * 109.47000 * 155.00019 * 13 12 10 17 17 H 1.08999 * 109.49595 * 305.05899 * 16 13 12 18 18 C 1.53037 * 109.49259 * 184.99838 * 16 13 12 19 19 C 1.53042 * 109.52345 * 178.69146 * 18 16 13 20 20 C 1.53159 * 109.33317 * 61.37052 * 19 18 16 21 21 N 1.46926 * 108.76527 * 305.35982 * 20 19 18 22 22 C 1.36943 * 120.62912 * 233.58552 * 21 20 19 23 23 H 1.07994 * 120.00119 * 151.84856 * 22 21 20 24 24 C 1.38815 * 119.99711 * 331.84265 * 22 21 20 25 25 N 1.31614 * 120.00095 * 343.07167 * 24 22 21 26 26 Si 1.86794 * 119.99885 * 163.06768 * 24 22 21 27 27 H 1.48500 * 109.47092 * 90.00229 * 26 24 22 28 28 H 1.48500 * 109.47403 * 210.00417 * 26 24 22 29 29 H 1.48505 * 109.47293 * 330.00639 * 26 24 22 30 30 C 1.46929 * 118.74181 * 53.60618 * 21 20 19 31 31 H 1.09002 * 109.47505 * 270.02552 * 1 2 3 32 32 H 1.08999 * 109.46846 * 30.01908 * 1 2 3 33 33 H 1.09001 * 109.47392 * 150.01794 * 1 2 3 34 34 H 1.08002 * 120.36284 * 0.02562 * 3 2 1 35 35 H 0.96699 * 113.99834 * 90.00442 * 5 4 3 36 36 H 1.09008 * 109.46924 * 270.25212 * 8 7 6 37 37 H 1.08998 * 109.47518 * 30.24552 * 8 7 6 38 38 H 1.08999 * 109.47458 * 150.25048 * 8 7 6 39 39 H 0.97007 * 119.99821 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.47512 * 299.99739 * 15 13 12 41 41 H 1.09003 * 109.46981 * 60.00631 * 15 13 12 42 42 H 1.09005 * 109.47151 * 179.97438 * 15 13 12 43 43 H 1.09004 * 109.46062 * 298.70173 * 18 16 13 44 44 H 1.08999 * 109.46536 * 58.67420 * 18 16 13 45 45 H 1.09001 * 109.49532 * 181.31192 * 19 18 16 46 46 H 1.08998 * 109.49530 * 301.40022 * 19 18 16 47 47 H 1.08998 * 109.59402 * 185.57258 * 20 19 18 48 48 H 1.08999 * 109.58871 * 65.13585 * 20 19 18 49 49 H 0.97003 * 120.00125 * 179.97438 * 25 24 22 50 50 H 1.09007 * 109.58416 * 186.60718 * 30 21 20 51 51 H 1.08993 * 109.58733 * 66.17900 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3044 2.3076 0.0011 6 7 4.2548 -0.0067 0.0016 7 6 3.6204 -1.1601 0.0073 8 6 4.4079 -2.4450 0.0150 9 6 2.2255 -1.2044 0.0011 10 6 1.5170 -2.4994 0.0014 11 8 1.2256 -3.0332 -1.0515 12 7 1.1932 -3.0902 1.1686 13 6 0.4896 -4.3752 1.1689 14 1 0.8322 -4.9772 0.3273 15 6 -1.0157 -4.1323 1.0430 16 6 0.7792 -5.1149 2.4766 17 1 1.8568 -5.2087 2.6105 18 6 0.1475 -6.5079 2.4260 19 6 0.4644 -7.2605 3.7204 20 6 -0.1346 -6.5012 4.9080 21 7 0.3561 -5.1165 4.8797 22 6 0.9622 -4.5685 5.9787 23 1 1.6968 -3.7865 5.8564 24 6 0.6321 -5.0182 7.2498 25 7 -0.4714 -5.7107 7.4370 26 14 1.7541 -4.6406 8.6947 27 1 1.3470 -3.3540 9.3145 28 1 1.6503 -5.7289 9.6997 29 1 3.1570 -4.5386 8.2186 30 6 0.1837 -4.3308 3.6502 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6936 2.1313 0.0004 35 1 4.5071 2.6442 0.8846 36 1 4.6025 -2.7580 -1.0109 37 1 5.3542 -2.2881 0.5326 38 1 3.8366 -3.2182 0.5286 39 1 1.4260 -2.6645 2.0087 40 1 -1.3584 -3.5303 1.8846 41 1 -1.2220 -3.6053 0.1113 42 1 -1.5393 -5.0884 1.0427 43 1 -0.9328 -6.4130 2.3163 44 1 0.5517 -7.0593 1.5771 45 1 0.0341 -8.2609 3.6742 46 1 1.5449 -7.3341 3.8432 47 1 0.1715 -6.9784 5.8389 48 1 -1.2220 -6.5050 4.8333 49 1 -0.7019 -6.0253 8.3251 50 1 0.6999 -3.3761 3.7513 51 1 -0.8777 -4.1577 3.4730 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025629926.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:25 Heat of formation + Delta-G solvation = -34.915195 kcal Electronic energy + Delta-G solvation = -31649.499467 eV Core-core repulsion = 27549.138650 eV Total energy + Delta-G solvation = -4100.360816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.20006 -39.70781 -38.16842 -37.32460 -35.23201 -34.58356 -33.12560 -32.19323 -30.83214 -30.50060 -28.40370 -28.23149 -27.82768 -25.35209 -24.58440 -23.39900 -22.23805 -21.61409 -20.99617 -20.25586 -18.84279 -18.64484 -17.80616 -17.46788 -16.69243 -16.24647 -15.84884 -15.03270 -14.85610 -14.63806 -14.43659 -14.20346 -13.99749 -13.87180 -13.60099 -13.53047 -13.40962 -13.20718 -13.05445 -12.60565 -12.48504 -12.43013 -12.36222 -12.30172 -12.15806 -11.91736 -11.84687 -11.68782 -11.04869 -10.95711 -10.63117 -10.52559 -10.31298 -10.23770 -10.10996 -9.92038 -9.84273 -9.70925 -9.58351 -9.44251 -9.08117 -9.01962 -8.50907 -6.70841 -5.84123 -3.26927 0.49142 0.84582 2.45433 2.92372 3.24735 3.32554 3.37734 3.40485 3.42153 4.15690 4.22808 4.43355 4.53100 4.72850 4.88143 4.98162 5.04891 5.16471 5.19402 5.26502 5.27722 5.34768 5.37128 5.39902 5.52306 5.58647 5.63476 5.65922 5.68360 5.79803 5.83853 5.86719 5.96006 6.07133 6.13892 6.17342 6.19948 6.29248 6.43477 6.52831 6.56518 6.66225 6.73190 6.82640 6.92777 7.12545 7.35905 7.46121 7.58429 7.62963 7.73647 8.11605 8.39578 9.15865 9.79443 10.36040 11.24018 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.003083 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.589423 B = 9079.547427 C =10445.888844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.014 3.986 3 C -0.197 4.197 4 C 0.331 3.669 5 O -0.482 6.482 6 N -0.507 5.507 7 C 0.196 3.804 8 C -0.113 4.113 9 C -0.192 4.192 10 C 0.573 3.427 11 O -0.533 6.533 12 N -0.710 5.710 13 C 0.148 3.852 14 H 0.084 0.916 15 C -0.165 4.165 16 C -0.113 4.113 17 H 0.073 0.927 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.255 4.255 23 H 0.063 0.937 24 C 0.005 3.995 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.279 1.279 30 C 0.152 3.848 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.404 0.596 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.404 0.596 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.254 0.746 50 H 0.046 0.954 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 9.435 -13.846 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.006 3.994 3 C -0.218 4.218 4 C 0.153 3.847 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.057 3.943 8 C -0.170 4.170 9 C -0.197 4.197 10 C 0.358 3.642 11 O -0.410 6.410 12 N -0.361 5.361 13 C 0.044 3.956 14 H 0.102 0.898 15 C -0.223 4.223 16 C -0.134 4.134 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.385 4.385 23 H 0.081 0.919 24 C -0.194 4.194 25 N -0.545 5.545 26 Si 0.729 3.271 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.205 1.205 30 C 0.025 3.975 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.164 0.836 35 H 0.262 0.738 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.239 0.761 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.813 9.001 -15.012 17.915 hybrid contribution -0.099 0.651 1.693 1.816 sum 3.714 9.652 -13.319 16.863 Atomic orbital electron populations 1.20968 0.89221 1.04221 1.03847 1.20205 0.97016 0.90818 0.91384 1.21870 0.93719 0.99376 1.06829 1.19242 0.87049 0.85043 0.93390 1.84716 1.76001 1.34047 1.34164 1.66988 1.41861 0.97832 1.16011 1.21048 0.89152 0.93176 0.90875 1.20876 1.00575 0.91527 1.04004 1.20738 0.94878 0.94513 1.09581 1.17844 0.78254 0.83788 0.84361 1.90812 1.54401 1.64495 1.31253 1.46281 1.58417 1.23218 1.08209 1.21110 0.92008 0.83292 0.99212 0.89817 1.22264 0.95506 1.02688 1.01861 1.21964 1.01241 0.96214 0.93959 0.90900 1.21418 1.00122 0.94550 0.97728 1.22174 1.01040 0.98083 0.96864 1.20782 0.94899 0.84120 0.95783 1.44013 1.69151 1.08607 1.09514 1.19128 1.15562 1.19502 0.84274 0.91883 1.25021 0.96205 1.00745 0.97445 1.70029 1.22084 1.40817 1.21541 0.86349 0.80675 0.77528 0.82520 1.21413 1.21519 1.20491 1.20990 0.96999 0.93142 0.86379 0.89380 0.90222 0.90298 0.83607 0.73803 0.89469 0.89511 0.90102 0.76056 0.91497 0.92911 0.91270 0.92230 0.93496 0.93219 0.92792 0.89624 0.96458 0.93611 0.93575 0.95653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.69 36.00 0.35 -0.75 16 2 C 0.01 0.15 5.95 -103.96 -0.62 -0.47 16 3 C -0.20 -1.90 9.72 -39.34 -0.38 -2.29 16 4 C 0.33 3.68 7.74 -16.96 -0.13 3.55 16 5 O -0.48 -4.40 13.55 -18.18 -0.25 -4.65 16 6 N -0.51 -6.50 10.28 -9.20 -0.09 -6.59 16 7 C 0.20 2.44 6.82 -82.18 -0.56 1.88 16 8 C -0.11 -1.21 9.78 36.00 0.35 -0.86 16 9 C -0.19 -2.36 5.65 -104.82 -0.59 -2.95 16 10 C 0.57 7.65 4.29 -12.43 -0.05 7.60 16 11 O -0.53 -8.74 16.77 5.29 0.09 -8.65 16 12 N -0.71 -8.85 5.01 -54.82 -0.27 -9.12 16 13 C 0.15 1.97 2.35 -67.93 -0.16 1.81 16 14 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 15 C -0.17 -2.11 8.76 37.16 0.33 -1.79 16 16 C -0.11 -1.74 2.27 -90.50 -0.21 -1.94 16 17 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.10 -1.55 4.89 -26.69 -0.13 -1.68 16 19 C -0.14 -2.57 6.08 -26.63 -0.16 -2.73 16 20 C 0.17 3.86 5.30 -3.73 -0.02 3.84 16 21 N -0.59 -13.85 2.99 -172.34 -0.52 -14.36 16 22 C -0.26 -6.66 9.58 -15.06 -0.14 -6.80 16 23 H 0.06 1.61 7.88 -52.49 -0.41 1.20 16 24 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 25 N -0.90 -25.31 11.20 55.49 0.62 -24.69 16 26 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 C 0.15 2.82 5.26 -3.71 -0.02 2.80 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.08 0.81 7.19 -51.93 -0.37 0.43 16 34 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.40 1.64 9.06 45.56 0.41 2.05 16 36 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.87 7.06 -51.93 -0.37 0.51 16 39 H 0.40 4.80 7.27 -40.82 -0.30 4.50 16 40 H 0.07 0.88 6.23 -51.93 -0.32 0.55 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.86 6.60 -51.93 -0.34 0.52 16 43 H 0.06 0.91 6.63 -51.93 -0.34 0.57 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 2.21 6.06 -51.93 -0.31 1.89 16 48 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 50 H 0.05 0.83 6.75 -51.92 -0.35 0.48 16 51 H 0.03 0.49 6.06 -51.93 -0.31 0.17 16 LS Contribution 401.86 15.07 6.06 6.06 Total: -1.00 -32.37 401.86 -8.84 -41.21 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.20 Total: 5.60 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.24 Total: -0.76 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.26 Total: -54.77 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.16 Total: -13.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.37 -8.84 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025629926.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.291 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds