Wall clock time and date at job start Wed Apr 1 2020 05:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37996 * 120.82511 * 2 1 4 4 C 1.39126 * 119.26686 * 179.97438 * 3 2 1 5 5 O 1.35497 * 119.52468 * 180.02562 * 4 3 2 6 6 N 1.32435 * 120.94937 * 359.97438 * 4 3 2 7 7 C 1.31638 * 121.79860 * 359.73488 * 6 4 3 8 8 C 1.50697 * 119.68798 * 180.29743 * 7 6 4 9 9 C 1.39568 * 120.62485 * 0.54457 * 7 6 4 10 10 C 1.47616 * 120.49589 * 179.72155 * 9 7 6 11 11 O 1.21588 * 120.00013 * 269.72519 * 10 9 7 12 12 N 1.34773 * 120.00094 * 89.73011 * 10 9 7 13 13 C 1.46502 * 120.00158 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.46963 * 34.99594 * 13 12 10 15 15 C 1.53001 * 109.46624 * 274.99518 * 13 12 10 16 16 C 1.53005 * 109.47000 * 155.00019 * 13 12 10 17 17 H 1.08999 * 109.49595 * 305.05899 * 16 13 12 18 18 C 1.53037 * 109.49259 * 184.99838 * 16 13 12 19 19 C 1.53042 * 109.52345 * 178.69146 * 18 16 13 20 20 C 1.53159 * 109.33317 * 61.37052 * 19 18 16 21 21 N 1.46926 * 108.76527 * 305.35982 * 20 19 18 22 22 C 1.36943 * 120.62912 * 233.58552 * 21 20 19 23 23 H 1.07994 * 120.00119 * 151.84856 * 22 21 20 24 24 C 1.38815 * 119.99711 * 331.84265 * 22 21 20 25 25 N 1.31614 * 120.00095 * 343.07167 * 24 22 21 26 26 Si 1.86794 * 119.99885 * 163.06768 * 24 22 21 27 27 H 1.48500 * 109.47092 * 90.00229 * 26 24 22 28 28 H 1.48500 * 109.47403 * 210.00417 * 26 24 22 29 29 H 1.48505 * 109.47293 * 330.00639 * 26 24 22 30 30 C 1.46929 * 118.74181 * 53.60618 * 21 20 19 31 31 H 1.09002 * 109.47505 * 270.02552 * 1 2 3 32 32 H 1.08999 * 109.46846 * 30.01908 * 1 2 3 33 33 H 1.09001 * 109.47392 * 150.01794 * 1 2 3 34 34 H 1.08002 * 120.36284 * 0.02562 * 3 2 1 35 35 H 0.96699 * 113.99834 * 90.00442 * 5 4 3 36 36 H 1.09008 * 109.46924 * 270.25212 * 8 7 6 37 37 H 1.08998 * 109.47518 * 30.24552 * 8 7 6 38 38 H 1.08999 * 109.47458 * 150.25048 * 8 7 6 39 39 H 0.97007 * 119.99821 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.47512 * 299.99739 * 15 13 12 41 41 H 1.09003 * 109.46981 * 60.00631 * 15 13 12 42 42 H 1.09005 * 109.47151 * 179.97438 * 15 13 12 43 43 H 1.09004 * 109.46062 * 298.70173 * 18 16 13 44 44 H 1.08999 * 109.46536 * 58.67420 * 18 16 13 45 45 H 1.09001 * 109.49532 * 181.31192 * 19 18 16 46 46 H 1.08998 * 109.49530 * 301.40022 * 19 18 16 47 47 H 1.08998 * 109.59402 * 185.57258 * 20 19 18 48 48 H 1.08999 * 109.58871 * 65.13585 * 20 19 18 49 49 H 0.97003 * 120.00125 * 179.97438 * 25 24 22 50 50 H 1.09007 * 109.58416 * 186.60718 * 30 21 20 51 51 H 1.08993 * 109.58733 * 66.17900 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3044 2.3076 0.0011 6 7 4.2548 -0.0067 0.0016 7 6 3.6204 -1.1601 0.0073 8 6 4.4079 -2.4450 0.0150 9 6 2.2255 -1.2044 0.0011 10 6 1.5170 -2.4994 0.0014 11 8 1.2256 -3.0332 -1.0515 12 7 1.1932 -3.0902 1.1686 13 6 0.4896 -4.3752 1.1689 14 1 0.8322 -4.9772 0.3273 15 6 -1.0157 -4.1323 1.0430 16 6 0.7792 -5.1149 2.4766 17 1 1.8568 -5.2087 2.6105 18 6 0.1475 -6.5079 2.4260 19 6 0.4644 -7.2605 3.7204 20 6 -0.1346 -6.5012 4.9080 21 7 0.3561 -5.1165 4.8797 22 6 0.9622 -4.5685 5.9787 23 1 1.6968 -3.7865 5.8564 24 6 0.6321 -5.0182 7.2498 25 7 -0.4714 -5.7107 7.4370 26 14 1.7541 -4.6406 8.6947 27 1 1.3470 -3.3540 9.3145 28 1 1.6503 -5.7289 9.6997 29 1 3.1570 -4.5386 8.2186 30 6 0.1837 -4.3308 3.6502 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6936 2.1313 0.0004 35 1 4.5071 2.6442 0.8846 36 1 4.6025 -2.7580 -1.0109 37 1 5.3542 -2.2881 0.5326 38 1 3.8366 -3.2182 0.5286 39 1 1.4260 -2.6645 2.0087 40 1 -1.3584 -3.5303 1.8846 41 1 -1.2220 -3.6053 0.1113 42 1 -1.5393 -5.0884 1.0427 43 1 -0.9328 -6.4130 2.3163 44 1 0.5517 -7.0593 1.5771 45 1 0.0341 -8.2609 3.6742 46 1 1.5449 -7.3341 3.8432 47 1 0.1715 -6.9784 5.8389 48 1 -1.2220 -6.5050 4.8333 49 1 -0.7019 -6.0253 8.3251 50 1 0.6999 -3.3761 3.7513 51 1 -0.8777 -4.1577 3.4730 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025629926.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:18 Heat of formation + Delta-G solvation = -58.475904 kcal Electronic energy + Delta-G solvation = -31650.521136 eV Core-core repulsion = 27549.138650 eV Total energy + Delta-G solvation = -4101.382485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 6.63 seconds Orbital eigenvalues (eV) -42.08890 -40.76637 -39.47491 -38.16249 -36.65393 -35.38341 -34.68049 -33.23210 -32.29557 -32.01226 -29.55256 -29.07710 -28.73477 -27.19917 -25.65430 -24.51014 -23.84317 -22.45247 -22.29496 -21.42915 -20.17838 -19.46671 -18.92481 -18.47656 -18.28176 -17.28352 -16.82987 -16.70631 -16.04191 -15.88401 -15.61328 -15.34116 -15.18756 -15.02749 -14.80762 -14.66514 -14.32328 -14.22919 -14.07747 -13.96801 -13.92070 -13.55007 -13.36296 -13.28566 -13.16040 -13.01584 -12.94928 -12.75649 -12.67962 -12.63105 -12.28628 -12.02497 -11.94914 -11.68103 -11.49138 -11.36119 -11.11715 -11.02501 -10.64249 -10.53508 -10.49779 -10.12518 -9.91328 -8.62040 -7.84699 -5.29310 -0.34007 0.03497 1.41784 1.46430 1.49345 1.57583 2.01688 2.36669 2.52370 2.58015 3.30416 3.36897 3.44154 3.56086 3.65796 3.94639 3.96032 4.02533 4.08181 4.17422 4.27153 4.37696 4.39435 4.44639 4.50063 4.52880 4.56589 4.63737 4.68640 4.72917 4.80972 4.88245 4.91803 4.95457 5.00503 5.06098 5.08627 5.10239 5.17231 5.23374 5.32881 5.38133 5.39878 5.47326 5.52890 5.60638 5.70703 5.82482 6.40844 6.43351 6.53500 6.78401 7.07851 7.18160 7.90499 8.41568 9.21130 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.003083 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.589423 B = 9079.547427 C =10445.888844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.011 3.989 3 C -0.190 4.190 4 C 0.327 3.673 5 O -0.487 6.487 6 N -0.531 5.531 7 C 0.185 3.815 8 C -0.111 4.111 9 C -0.210 4.210 10 C 0.584 3.416 11 O -0.565 6.565 12 N -0.704 5.704 13 C 0.158 3.842 14 H 0.084 0.916 15 C -0.160 4.160 16 C -0.097 4.097 17 H 0.067 0.933 18 C -0.097 4.097 19 C -0.132 4.132 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.260 4.260 23 H 0.067 0.933 24 C -0.048 4.048 25 N -0.933 5.933 26 Si 0.960 3.040 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.271 1.271 30 C 0.151 3.849 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.176 0.824 35 H 0.424 0.576 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.408 0.592 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.049 0.951 48 H -0.004 1.004 49 H 0.248 0.752 50 H 0.051 0.949 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.640 10.748 -14.976 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.003 3.997 3 C -0.210 4.210 4 C 0.148 3.852 5 O -0.298 6.298 6 N -0.252 5.252 7 C 0.046 3.954 8 C -0.168 4.168 9 C -0.216 4.216 10 C 0.369 3.631 11 O -0.444 6.444 12 N -0.354 5.354 13 C 0.054 3.946 14 H 0.102 0.898 15 C -0.218 4.218 16 C -0.118 4.118 17 H 0.085 0.915 18 C -0.135 4.135 19 C -0.171 4.171 20 C 0.049 3.951 21 N -0.332 5.332 22 C -0.390 4.390 23 H 0.084 0.916 24 C -0.244 4.244 25 N -0.579 5.579 26 Si 0.788 3.212 27 H -0.212 1.212 28 H -0.222 1.222 29 H -0.196 1.196 30 C 0.026 3.974 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.193 0.807 35 H 0.287 0.713 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.244 0.756 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.014 0.986 49 H 0.057 0.943 50 H 0.069 0.931 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.242 10.342 -16.143 19.635 hybrid contribution -0.220 0.339 2.023 2.063 sum 4.022 10.681 -14.120 18.155 Atomic orbital electron populations 1.21007 0.87888 1.04530 1.04554 1.20486 0.98005 0.90556 0.90624 1.22122 0.93184 1.00215 1.05530 1.19513 0.87830 0.85086 0.92751 1.84671 1.75851 1.33174 1.36128 1.66997 1.42601 0.98455 1.17149 1.21212 0.89409 0.93589 0.91161 1.20880 1.00736 0.91024 1.04167 1.20720 0.94997 0.94523 1.11311 1.17905 0.77510 0.83858 0.83783 1.90791 1.55838 1.65467 1.32313 1.46202 1.58033 1.22844 1.08306 1.20943 0.92532 0.83455 0.97717 0.89760 1.22210 0.94881 1.02987 1.01698 1.21738 1.00479 0.96103 0.93470 0.91500 1.21411 1.00654 0.94335 0.97100 1.22008 1.00299 0.98690 0.96059 1.20601 0.93809 0.84491 0.96237 1.44268 1.69141 1.09420 1.10343 1.19478 1.15279 1.18974 0.85280 0.91553 1.25710 0.97438 1.01409 0.99795 1.70177 1.23752 1.42482 1.21536 0.85397 0.79317 0.76922 0.79534 1.21187 1.22181 1.19638 1.21120 0.97282 0.93394 0.85607 0.88367 0.87930 0.91942 0.80671 0.71336 0.89298 0.88816 0.90403 0.75605 0.91958 0.92746 0.90631 0.91721 0.90695 0.91387 0.93327 0.93302 0.98556 0.94256 0.93089 0.95695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.69 71.24 0.69 -1.19 16 2 C 0.01 0.22 5.95 -19.44 -0.12 0.10 16 3 C -0.19 -3.20 9.72 22.43 0.22 -2.99 16 4 C 0.33 6.67 7.74 84.82 0.66 7.33 16 5 O -0.49 -7.88 13.55 -87.98 -1.19 -9.07 16 6 N -0.53 -13.09 10.28 -295.89 -3.04 -16.13 16 7 C 0.18 4.46 6.82 42.91 0.29 4.76 16 8 C -0.11 -2.34 9.78 71.24 0.70 -1.64 16 9 C -0.21 -4.97 5.65 -19.99 -0.11 -5.08 16 10 C 0.58 15.03 4.29 86.72 0.37 15.40 16 11 O -0.56 -18.11 16.77 -3.99 -0.07 -18.17 16 12 N -0.70 -16.64 5.01 -445.61 -2.23 -18.87 16 13 C 0.16 3.94 2.35 44.99 0.11 4.04 16 14 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 15 C -0.16 -3.80 8.76 71.98 0.63 -3.17 16 16 C -0.10 -2.84 2.27 -10.72 -0.02 -2.86 16 17 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 18 C -0.10 -2.79 4.89 30.62 0.15 -2.64 16 19 C -0.13 -4.61 6.08 30.66 0.19 -4.43 16 20 C 0.17 8.05 5.30 86.35 0.46 8.51 16 21 N -0.61 -28.64 2.99 -699.16 -2.09 -30.73 16 22 C -0.26 -13.63 9.58 84.03 0.81 -12.82 16 23 H 0.07 3.36 7.88 -2.91 -0.02 3.34 16 24 C -0.05 -2.60 4.92 84.86 0.42 -2.18 16 25 N -0.93 -53.89 11.20 21.65 0.24 -53.65 16 26 Si 0.96 43.63 29.59 68.60 2.03 45.65 16 27 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 30 C 0.15 5.51 5.26 86.36 0.45 5.96 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.08 8.10 -2.39 -0.02 1.06 16 33 H 0.06 1.19 7.19 -2.39 -0.02 1.17 16 34 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.42 2.50 9.06 -74.06 -0.67 1.83 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.64 7.06 -2.39 -0.02 1.63 16 39 H 0.41 9.19 7.27 -92.70 -0.67 8.51 16 40 H 0.06 1.54 6.23 -2.39 -0.01 1.52 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.71 6.60 -2.38 -0.02 1.69 16 43 H 0.06 1.83 6.63 -2.38 -0.02 1.81 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.05 2.60 6.06 -2.39 -0.01 2.59 16 48 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 49 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 50 H 0.05 1.78 6.75 -2.38 -0.02 1.76 16 51 H 0.03 0.93 6.06 -2.39 -0.01 0.92 16 Total: -1.00 -70.50 401.86 -0.85 -71.35 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.38 Total: 22.53 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.88 Total: 7.09 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -7.12 Total: -119.38 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.26 Total: -27.25 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.50 -0.85 -71.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025629926.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.874 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.63 seconds