Wall clock time and date at job start Wed Apr 1 2020 07:57:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.35457 * 126.77681 * 2 1
4 4 C 1.41384 * 103.98218 * 179.97438 * 3 2 1
5 5 C 1.50699 * 126.79832 * 180.02562 * 4 3 2
6 6 C 1.52999 * 109.47265 * 124.99549 * 5 4 3
7 7 C 1.50703 * 109.47117 * 179.97438 * 6 5 4
8 8 O 1.21278 * 120.00182 * 0.02562 * 7 6 5
9 9 N 1.34783 * 119.99891 * 179.97438 * 7 6 5
10 10 C 1.48188 * 127.79989 * 359.97438 * 9 7 6
11 11 C 1.54507 * 104.62863 * 140.73535 * 10 9 7
12 12 C 1.53843 * 104.79367 * 23.79851 * 11 10 9
13 13 C 1.48253 * 127.80098 * 180.02562 * 9 7 6
14 14 C 1.52480 * 110.21439 * 240.96093 * 12 11 10
15 15 C 1.53120 * 109.65590 * 178.09138 * 14 12 11
16 16 C 1.52748 * 109.36320 * 60.36416 * 15 14 12
17 17 N 1.46928 * 109.08454 * 305.08154 * 16 15 14
18 18 C 1.36942 * 120.67512 * 234.05325 * 17 16 15
19 19 H 1.07998 * 119.99801 * 27.10927 * 18 17 16
20 20 C 1.38806 * 119.99770 * 207.37453 * 18 17 16
21 21 N 1.31622 * 120.00404 * 16.84896 * 20 18 17
22 22 Si 1.86800 * 119.99762 * 196.84362 * 20 18 17
23 23 H 1.48503 * 109.47438 * 60.00225 * 22 20 18
24 24 H 1.48504 * 109.47353 * 180.02562 * 22 20 18
25 25 H 1.48505 * 109.47009 * 300.00185 * 22 20 18
26 26 C 1.47022 * 118.64940 * 53.78630 * 17 16 15
27 27 N 1.30168 * 106.39815 * 0.25820 * 4 3 2
28 28 O 1.20927 * 111.60646 * 359.53973 * 27 4 3
29 29 H 1.08996 * 109.47453 * 89.99413 * 1 2 3
30 30 H 1.08999 * 109.46865 * 210.00753 * 1 2 3
31 31 H 1.09007 * 109.46819 * 330.00002 * 1 2 3
32 32 H 1.07995 * 128.00805 * 359.94075 * 3 2 1
33 33 H 1.09003 * 109.47493 * 4.99421 * 5 4 3
34 34 H 1.09001 * 109.47097 * 244.99249 * 5 4 3
35 35 H 1.09003 * 109.46970 * 59.99552 * 6 5 4
36 36 H 1.09002 * 109.47336 * 299.99791 * 6 5 4
37 37 H 1.08995 * 110.40824 * 21.94800 * 10 9 7
38 38 H 1.08999 * 110.40523 * 259.52336 * 10 9 7
39 39 H 1.08994 * 110.37686 * 264.96822 * 11 10 9
40 40 H 1.09008 * 110.46547 * 142.67663 * 11 10 9
41 41 H 1.08995 * 110.42624 * 100.36152 * 13 9 7
42 42 H 1.09002 * 110.42758 * 337.87785 * 13 9 7
43 43 H 1.09001 * 109.44035 * 298.14557 * 14 12 11
44 44 H 1.09003 * 109.43929 * 58.03242 * 14 12 11
45 45 H 1.08999 * 109.49867 * 180.43516 * 15 14 12
46 46 H 1.09000 * 109.49719 * 300.53782 * 15 14 12
47 47 H 1.09009 * 109.49420 * 185.17489 * 16 15 14
48 48 H 1.09001 * 109.42517 * 64.94551 * 16 15 14
49 49 H 0.96996 * 119.99885 * 179.97438 * 21 20 18
50 50 H 1.08995 * 109.57480 * 67.32146 * 26 17 16
51 51 H 1.09000 * 109.57712 * 187.70856 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3180 1.0850 0.0000
4 6 3.6214 0.5372 0.0006
5 6 4.9211 1.3000 0.0014
6 6 5.7790 0.8445 1.1835
7 6 7.0790 1.6068 1.1839
8 8 7.2976 2.4334 0.3238
9 7 7.9984 1.3707 2.1408
10 6 7.9125 0.4096 3.2655
11 6 9.3333 -0.1870 3.3783
12 6 10.2551 0.8720 2.7492
13 6 9.3235 2.0146 2.3064
14 6 10.9822 0.2879 1.5429
15 6 11.8591 1.3653 0.8988
16 6 12.8887 1.8548 1.9153
17 7 12.1909 2.3040 3.1277
18 6 12.4043 3.5591 3.6322
19 1 12.7062 4.3611 2.9749
20 6 12.2379 3.7992 4.9892
21 7 12.2047 2.7925 5.8365
22 14 12.0612 5.5511 5.6129
23 1 10.8703 6.1812 4.9884
24 1 11.8977 5.5370 7.0888
25 1 13.2759 6.3280 5.2573
26 6 11.2542 1.3808 3.7849
27 7 3.4764 -0.7563 -0.0047
28 8 2.3095 -1.0736 0.0006
29 1 -0.3634 0.0001 -1.0276
30 1 -0.3633 -0.8899 0.5140
31 1 -0.3633 0.8901 0.5139
32 1 2.0345 2.1271 -0.0009
33 1 4.7163 2.3668 0.0909
34 1 5.4548 1.1093 -0.9297
35 1 5.9838 -0.2224 1.0940
36 1 5.2454 1.0351 2.1146
37 1 7.1882 -0.3735 3.0417
38 1 7.6429 0.9259 4.1868
39 1 9.3970 -1.1231 2.8237
40 1 9.5974 -0.3473 4.4237
41 1 9.2777 2.7872 3.0739
42 1 9.6624 2.4366 1.3603
43 1 11.6080 -0.5446 1.8647
44 1 10.2517 -0.0677 0.8163
45 1 12.3716 0.9472 0.0324
46 1 11.2353 2.2020 0.5844
47 1 13.4535 2.6847 1.4903
48 1 13.5673 1.0392 2.1655
49 1 12.0887 2.9604 6.7847
50 1 11.8052 0.5393 4.2049
51 1 10.7222 1.9043 4.5792
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001040388869.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 07:57:45
Heat of formation + Delta-G solvation = 40.026872 kcal
Electronic energy + Delta-G solvation = -31136.976632 eV
Core-core repulsion = 27039.865547 eV
Total energy + Delta-G solvation = -4097.111085 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 23.70 seconds
Orbital eigenvalues (eV)
-45.17206 -40.12157 -38.43348 -35.83888 -35.42555 -33.85119 -33.06934 -31.89310
-31.19832 -30.00108 -28.79585 -28.16671 -26.68202 -25.31429 -24.37535 -23.28336
-23.03092 -22.15247 -20.38357 -20.07623 -18.92789 -18.05741 -17.84840 -17.55623
-16.84607 -16.71888 -15.87814 -15.24998 -15.02152 -14.67195 -14.60169 -14.10323
-14.00004 -13.86027 -13.70312 -13.52850 -13.24220 -13.11615 -12.94039 -12.78860
-12.59289 -12.51871 -12.39960 -12.09205 -11.80243 -11.75578 -11.46959 -11.11689
-11.03491 -11.00490 -10.82333 -10.68480 -10.38844 -10.28501 -10.27121 -10.13261
-9.75251 -9.68249 -9.57724 -9.44918 -9.40073 -8.49418 -8.38359 -6.67164
-5.80155 -3.20899 1.18604 1.96059 2.80714 2.82827 3.18765 3.38312
3.43707 3.46251 3.92977 4.13022 4.48864 4.59185 4.68748 4.78980
4.89264 4.93569 4.95490 4.98393 5.05068 5.18627 5.20322 5.31936
5.35590 5.41684 5.46007 5.53579 5.58765 5.65788 5.70250 5.71384
5.78165 5.83611 5.93633 6.11101 6.14017 6.16752 6.23026 6.30572
6.38023 6.44246 6.53393 6.70054 6.78365 6.84704 6.94978 7.04945
7.29989 7.59084 7.79490 7.84067 8.03360 8.35078 8.43430 9.20620
9.83877 10.41048 11.28599
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016792 B = 0.002296 C = 0.002187
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1667.071903 B =12194.364200 C =12802.264351
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.036 4.036
3 C -0.231 4.231
4 C 0.024 3.976
5 C -0.025 4.025
6 C -0.130 4.130
7 C 0.531 3.469
8 O -0.548 6.548
9 N -0.622 5.622
10 C 0.101 3.899
11 C -0.124 4.124
12 C -0.094 4.094
13 C 0.126 3.874
14 C -0.092 4.092
15 C -0.139 4.139
16 C 0.145 3.855
17 N -0.591 5.591
18 C -0.248 4.248
19 H 0.065 0.935
20 C 0.002 3.998
21 N -0.904 5.904
22 Si 0.899 3.101
23 H -0.284 1.284
24 H -0.291 1.291
25 H -0.283 1.283
26 C 0.189 3.811
27 N -0.364 5.364
28 O 0.097 5.903
29 H 0.087 0.913
30 H 0.083 0.917
31 H 0.091 0.909
32 H 0.171 0.829
33 H 0.095 0.905
34 H 0.092 0.908
35 H 0.095 0.905
36 H 0.092 0.908
37 H 0.071 0.929
38 H 0.073 0.927
39 H 0.066 0.934
40 H 0.082 0.918
41 H 0.077 0.923
42 H 0.082 0.918
43 H 0.056 0.944
44 H 0.044 0.956
45 H 0.050 0.950
46 H 0.060 0.940
47 H 0.052 0.948
48 H 0.017 0.983
49 H 0.254 0.746
50 H 0.022 0.978
51 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.020 -8.095 -8.559 24.096
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.100 4.100
3 C -0.253 4.253
4 C -0.134 4.134
5 C -0.064 4.064
6 C -0.171 4.171
7 C 0.320 3.680
8 O -0.426 6.426
9 N -0.355 5.355
10 C -0.022 4.022
11 C -0.163 4.163
12 C -0.097 4.097
13 C 0.005 3.995
14 C -0.129 4.129
15 C -0.178 4.178
16 C 0.019 3.981
17 N -0.313 5.313
18 C -0.378 4.378
19 H 0.083 0.917
20 C -0.196 4.196
21 N -0.549 5.549
22 Si 0.729 3.271
23 H -0.210 1.210
24 H -0.217 1.217
25 H -0.209 1.209
26 C 0.062 3.938
27 N -0.068 5.068
28 O 0.031 5.969
29 H 0.106 0.894
30 H 0.102 0.898
31 H 0.110 0.890
32 H 0.189 0.811
33 H 0.113 0.887
34 H 0.110 0.890
35 H 0.114 0.886
36 H 0.110 0.890
37 H 0.090 0.910
38 H 0.091 0.909
39 H 0.085 0.915
40 H 0.101 0.899
41 H 0.095 0.905
42 H 0.100 0.900
43 H 0.074 0.926
44 H 0.062 0.938
45 H 0.068 0.932
46 H 0.079 0.921
47 H 0.071 0.929
48 H 0.034 0.966
49 H 0.064 0.936
50 H 0.040 0.960
51 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -20.113 -8.634 -8.911 23.632
hybrid contribution -0.410 1.580 0.522 1.714
sum -20.523 -7.054 -8.389 23.266
Atomic orbital electron populations
1.20333 0.84056 1.04660 1.04081 1.24520 0.96403 0.86298 1.02732
1.22470 0.91338 1.01079 1.10388 1.23629 0.97450 0.90028 1.02318
1.19742 0.88280 0.98929 0.99435 1.21563 0.93803 1.01543 1.00154
1.20046 0.84522 0.83094 0.80341 1.90698 1.79093 1.35550 1.37308
1.49207 1.18628 1.40688 1.26971 1.22443 0.98409 0.91841 0.89541
1.22545 0.93379 0.98228 1.02177 1.21861 0.96060 0.93948 0.97817
1.22456 0.79391 0.95258 1.02359 1.21327 0.97757 0.97704 0.96159
1.22037 0.99042 0.98466 0.98253 1.20819 0.92516 0.96950 0.87823
1.44037 1.45986 1.13677 1.27633 1.19145 1.42464 0.85622 0.90564
0.91722 1.24993 1.01631 0.97048 0.95931 1.70010 1.53657 1.29400
1.01822 0.86414 0.78335 0.84836 0.77498 1.21035 1.21668 1.20895
1.20783 0.88875 0.92464 0.91651 1.73842 0.96768 1.16385 1.19808
1.84829 1.11343 1.33168 1.67570 0.89435 0.89824 0.89045 0.81131
0.88689 0.88993 0.88628 0.89007 0.91015 0.90919 0.91533 0.89905
0.90522 0.89974 0.92563 0.93771 0.93170 0.92107 0.92938 0.96559
0.93631 0.95996 0.89192
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.25 10.45 36.00 0.38 0.12 16
2 C -0.04 -0.28 7.49 -35.30 -0.26 -0.54 16
3 C -0.23 -1.99 11.05 -39.38 -0.44 -2.43 16
4 C 0.02 0.27 6.59 -82.10 -0.54 -0.27 16
5 C -0.03 -0.29 5.10 -27.88 -0.14 -0.43 16
6 C -0.13 -1.55 4.65 -27.88 -0.13 -1.68 16
7 C 0.53 8.45 7.91 -10.98 -0.09 8.36 16
8 O -0.55 -10.60 16.25 5.56 0.09 -10.51 16
9 N -0.62 -9.96 3.32 -169.39 -0.56 -10.52 16
10 C 0.10 1.34 6.92 -2.32 -0.02 1.32 16
11 C -0.12 -1.81 6.29 -25.50 -0.16 -1.97 16
12 C -0.09 -1.69 0.68 -154.04 -0.11 -1.79 16
13 C 0.13 2.39 5.79 -2.59 -0.01 2.37 16
14 C -0.09 -1.57 4.48 -26.94 -0.12 -1.70 16
15 C -0.14 -2.51 5.87 -26.80 -0.16 -2.67 16
16 C 0.15 3.04 6.47 -3.94 -0.03 3.02 16
17 N -0.59 -14.32 2.83 -172.85 -0.49 -14.81 16
18 C -0.25 -6.66 9.59 -15.06 -0.14 -6.81 16
19 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16
20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16
21 N -0.90 -25.39 11.17 55.49 0.62 -24.77 16
22 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16
23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16
25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
26 C 0.19 4.21 3.66 -3.94 -0.01 4.20 16
27 N -0.36 -4.44 12.06 33.42 0.40 -4.03 16
28 O 0.10 1.02 11.20 17.17 0.19 1.21 16
29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16
30 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16
31 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16
32 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16
33 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16
34 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16
35 H 0.10 1.10 7.95 -51.93 -0.41 0.69 16
36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
37 H 0.07 0.77 7.31 -51.93 -0.38 0.39 16
38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
39 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16
40 H 0.08 1.20 7.70 -51.92 -0.40 0.80 16
41 H 0.08 1.62 7.72 -51.93 -0.40 1.22 16
42 H 0.08 1.70 5.64 -51.93 -0.29 1.41 16
43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16
45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
46 H 0.06 1.17 6.21 -51.93 -0.32 0.85 16
47 H 0.05 1.09 7.93 -51.92 -0.41 0.68 16
48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16
49 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16
50 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
51 H 0.09 2.25 5.90 -51.93 -0.31 1.94 16
LS Contribution 401.59 15.07 6.05 6.05
Total: -1.00 -32.01 401.59 -9.16 -41.17
By element:
Atomic # 1 Polarization: 9.02 SS G_CDS: -8.37 Total: 0.65 kcal
Atomic # 6 Polarization: 1.14 SS G_CDS: -2.07 Total: -0.93 kcal
Atomic # 7 Polarization: -54.11 SS G_CDS: -0.03 Total: -54.14 kcal
Atomic # 8 Polarization: -9.58 SS G_CDS: 0.28 Total: -9.30 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -32.01 -9.16 -41.17 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001040388869.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.192 kcal
(2) G-P(sol) polarization free energy of solvation -32.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.185 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.027 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 23.70 seconds