Wall clock time and date at job start Wed Apr 1 2020 07:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35457 * 126.77681 * 2 1 4 4 C 1.41384 * 103.98218 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.79832 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47265 * 124.99549 * 5 4 3 7 7 C 1.50703 * 109.47117 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00182 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99891 * 179.97438 * 7 6 5 10 10 C 1.48188 * 127.79989 * 359.97438 * 9 7 6 11 11 C 1.54507 * 104.62863 * 140.73535 * 10 9 7 12 12 C 1.53843 * 104.79367 * 23.79851 * 11 10 9 13 13 C 1.48253 * 127.80098 * 180.02562 * 9 7 6 14 14 C 1.52480 * 110.21439 * 240.96093 * 12 11 10 15 15 C 1.53120 * 109.65590 * 178.09138 * 14 12 11 16 16 C 1.52748 * 109.36320 * 60.36416 * 15 14 12 17 17 N 1.46928 * 109.08454 * 305.08154 * 16 15 14 18 18 C 1.36942 * 120.67512 * 234.05325 * 17 16 15 19 19 H 1.07998 * 119.99801 * 27.10927 * 18 17 16 20 20 C 1.38806 * 119.99770 * 207.37453 * 18 17 16 21 21 N 1.31622 * 120.00404 * 16.84896 * 20 18 17 22 22 Si 1.86800 * 119.99762 * 196.84362 * 20 18 17 23 23 H 1.48503 * 109.47438 * 60.00225 * 22 20 18 24 24 H 1.48504 * 109.47353 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47009 * 300.00185 * 22 20 18 26 26 C 1.47022 * 118.64940 * 53.78630 * 17 16 15 27 27 N 1.30168 * 106.39815 * 0.25820 * 4 3 2 28 28 O 1.20927 * 111.60646 * 359.53973 * 27 4 3 29 29 H 1.08996 * 109.47453 * 89.99413 * 1 2 3 30 30 H 1.08999 * 109.46865 * 210.00753 * 1 2 3 31 31 H 1.09007 * 109.46819 * 330.00002 * 1 2 3 32 32 H 1.07995 * 128.00805 * 359.94075 * 3 2 1 33 33 H 1.09003 * 109.47493 * 4.99421 * 5 4 3 34 34 H 1.09001 * 109.47097 * 244.99249 * 5 4 3 35 35 H 1.09003 * 109.46970 * 59.99552 * 6 5 4 36 36 H 1.09002 * 109.47336 * 299.99791 * 6 5 4 37 37 H 1.08995 * 110.40824 * 21.94800 * 10 9 7 38 38 H 1.08999 * 110.40523 * 259.52336 * 10 9 7 39 39 H 1.08994 * 110.37686 * 264.96822 * 11 10 9 40 40 H 1.09008 * 110.46547 * 142.67663 * 11 10 9 41 41 H 1.08995 * 110.42624 * 100.36152 * 13 9 7 42 42 H 1.09002 * 110.42758 * 337.87785 * 13 9 7 43 43 H 1.09001 * 109.44035 * 298.14557 * 14 12 11 44 44 H 1.09003 * 109.43929 * 58.03242 * 14 12 11 45 45 H 1.08999 * 109.49867 * 180.43516 * 15 14 12 46 46 H 1.09000 * 109.49719 * 300.53782 * 15 14 12 47 47 H 1.09009 * 109.49420 * 185.17489 * 16 15 14 48 48 H 1.09001 * 109.42517 * 64.94551 * 16 15 14 49 49 H 0.96996 * 119.99885 * 179.97438 * 21 20 18 50 50 H 1.08995 * 109.57480 * 67.32146 * 26 17 16 51 51 H 1.09000 * 109.57712 * 187.70856 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5372 0.0006 5 6 4.9211 1.3000 0.0014 6 6 5.7790 0.8445 1.1835 7 6 7.0790 1.6068 1.1839 8 8 7.2976 2.4334 0.3238 9 7 7.9984 1.3707 2.1408 10 6 7.9125 0.4096 3.2655 11 6 9.3333 -0.1870 3.3783 12 6 10.2551 0.8720 2.7492 13 6 9.3235 2.0146 2.3064 14 6 10.9822 0.2879 1.5429 15 6 11.8591 1.3653 0.8988 16 6 12.8887 1.8548 1.9153 17 7 12.1909 2.3040 3.1277 18 6 12.4043 3.5591 3.6322 19 1 12.7062 4.3611 2.9749 20 6 12.2379 3.7992 4.9892 21 7 12.2047 2.7925 5.8365 22 14 12.0612 5.5511 5.6129 23 1 10.8703 6.1812 4.9884 24 1 11.8977 5.5370 7.0888 25 1 13.2759 6.3280 5.2573 26 6 11.2542 1.3808 3.7849 27 7 3.4764 -0.7563 -0.0047 28 8 2.3095 -1.0736 0.0006 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5140 31 1 -0.3633 0.8901 0.5139 32 1 2.0345 2.1271 -0.0009 33 1 4.7163 2.3668 0.0909 34 1 5.4548 1.1093 -0.9297 35 1 5.9838 -0.2224 1.0940 36 1 5.2454 1.0351 2.1146 37 1 7.1882 -0.3735 3.0417 38 1 7.6429 0.9259 4.1868 39 1 9.3970 -1.1231 2.8237 40 1 9.5974 -0.3473 4.4237 41 1 9.2777 2.7872 3.0739 42 1 9.6624 2.4366 1.3603 43 1 11.6080 -0.5446 1.8647 44 1 10.2517 -0.0677 0.8163 45 1 12.3716 0.9472 0.0324 46 1 11.2353 2.2020 0.5844 47 1 13.4535 2.6847 1.4903 48 1 13.5673 1.0392 2.1655 49 1 12.0887 2.9604 6.7847 50 1 11.8052 0.5393 4.2049 51 1 10.7222 1.9043 4.5792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040388869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:57:45 Heat of formation + Delta-G solvation = 40.026872 kcal Electronic energy + Delta-G solvation = -31136.976632 eV Core-core repulsion = 27039.865547 eV Total energy + Delta-G solvation = -4097.111085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 23.70 seconds Orbital eigenvalues (eV) -45.17206 -40.12157 -38.43348 -35.83888 -35.42555 -33.85119 -33.06934 -31.89310 -31.19832 -30.00108 -28.79585 -28.16671 -26.68202 -25.31429 -24.37535 -23.28336 -23.03092 -22.15247 -20.38357 -20.07623 -18.92789 -18.05741 -17.84840 -17.55623 -16.84607 -16.71888 -15.87814 -15.24998 -15.02152 -14.67195 -14.60169 -14.10323 -14.00004 -13.86027 -13.70312 -13.52850 -13.24220 -13.11615 -12.94039 -12.78860 -12.59289 -12.51871 -12.39960 -12.09205 -11.80243 -11.75578 -11.46959 -11.11689 -11.03491 -11.00490 -10.82333 -10.68480 -10.38844 -10.28501 -10.27121 -10.13261 -9.75251 -9.68249 -9.57724 -9.44918 -9.40073 -8.49418 -8.38359 -6.67164 -5.80155 -3.20899 1.18604 1.96059 2.80714 2.82827 3.18765 3.38312 3.43707 3.46251 3.92977 4.13022 4.48864 4.59185 4.68748 4.78980 4.89264 4.93569 4.95490 4.98393 5.05068 5.18627 5.20322 5.31936 5.35590 5.41684 5.46007 5.53579 5.58765 5.65788 5.70250 5.71384 5.78165 5.83611 5.93633 6.11101 6.14017 6.16752 6.23026 6.30572 6.38023 6.44246 6.53393 6.70054 6.78365 6.84704 6.94978 7.04945 7.29989 7.59084 7.79490 7.84067 8.03360 8.35078 8.43430 9.20620 9.83877 10.41048 11.28599 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.002296 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.071903 B =12194.364200 C =12802.264351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.231 4.231 4 C 0.024 3.976 5 C -0.025 4.025 6 C -0.130 4.130 7 C 0.531 3.469 8 O -0.548 6.548 9 N -0.622 5.622 10 C 0.101 3.899 11 C -0.124 4.124 12 C -0.094 4.094 13 C 0.126 3.874 14 C -0.092 4.092 15 C -0.139 4.139 16 C 0.145 3.855 17 N -0.591 5.591 18 C -0.248 4.248 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.899 3.101 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.189 3.811 27 N -0.364 5.364 28 O 0.097 5.903 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.017 0.983 49 H 0.254 0.746 50 H 0.022 0.978 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.020 -8.095 -8.559 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.253 4.253 4 C -0.134 4.134 5 C -0.064 4.064 6 C -0.171 4.171 7 C 0.320 3.680 8 O -0.426 6.426 9 N -0.355 5.355 10 C -0.022 4.022 11 C -0.163 4.163 12 C -0.097 4.097 13 C 0.005 3.995 14 C -0.129 4.129 15 C -0.178 4.178 16 C 0.019 3.981 17 N -0.313 5.313 18 C -0.378 4.378 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.549 5.549 22 Si 0.729 3.271 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.062 3.938 27 N -0.068 5.068 28 O 0.031 5.969 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.189 0.811 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.034 0.966 49 H 0.064 0.936 50 H 0.040 0.960 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.113 -8.634 -8.911 23.632 hybrid contribution -0.410 1.580 0.522 1.714 sum -20.523 -7.054 -8.389 23.266 Atomic orbital electron populations 1.20333 0.84056 1.04660 1.04081 1.24520 0.96403 0.86298 1.02732 1.22470 0.91338 1.01079 1.10388 1.23629 0.97450 0.90028 1.02318 1.19742 0.88280 0.98929 0.99435 1.21563 0.93803 1.01543 1.00154 1.20046 0.84522 0.83094 0.80341 1.90698 1.79093 1.35550 1.37308 1.49207 1.18628 1.40688 1.26971 1.22443 0.98409 0.91841 0.89541 1.22545 0.93379 0.98228 1.02177 1.21861 0.96060 0.93948 0.97817 1.22456 0.79391 0.95258 1.02359 1.21327 0.97757 0.97704 0.96159 1.22037 0.99042 0.98466 0.98253 1.20819 0.92516 0.96950 0.87823 1.44037 1.45986 1.13677 1.27633 1.19145 1.42464 0.85622 0.90564 0.91722 1.24993 1.01631 0.97048 0.95931 1.70010 1.53657 1.29400 1.01822 0.86414 0.78335 0.84836 0.77498 1.21035 1.21668 1.20895 1.20783 0.88875 0.92464 0.91651 1.73842 0.96768 1.16385 1.19808 1.84829 1.11343 1.33168 1.67570 0.89435 0.89824 0.89045 0.81131 0.88689 0.88993 0.88628 0.89007 0.91015 0.90919 0.91533 0.89905 0.90522 0.89974 0.92563 0.93771 0.93170 0.92107 0.92938 0.96559 0.93631 0.95996 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.45 36.00 0.38 0.12 16 2 C -0.04 -0.28 7.49 -35.30 -0.26 -0.54 16 3 C -0.23 -1.99 11.05 -39.38 -0.44 -2.43 16 4 C 0.02 0.27 6.59 -82.10 -0.54 -0.27 16 5 C -0.03 -0.29 5.10 -27.88 -0.14 -0.43 16 6 C -0.13 -1.55 4.65 -27.88 -0.13 -1.68 16 7 C 0.53 8.45 7.91 -10.98 -0.09 8.36 16 8 O -0.55 -10.60 16.25 5.56 0.09 -10.51 16 9 N -0.62 -9.96 3.32 -169.39 -0.56 -10.52 16 10 C 0.10 1.34 6.92 -2.32 -0.02 1.32 16 11 C -0.12 -1.81 6.29 -25.50 -0.16 -1.97 16 12 C -0.09 -1.69 0.68 -154.04 -0.11 -1.79 16 13 C 0.13 2.39 5.79 -2.59 -0.01 2.37 16 14 C -0.09 -1.57 4.48 -26.94 -0.12 -1.70 16 15 C -0.14 -2.51 5.87 -26.80 -0.16 -2.67 16 16 C 0.15 3.04 6.47 -3.94 -0.03 3.02 16 17 N -0.59 -14.32 2.83 -172.85 -0.49 -14.81 16 18 C -0.25 -6.66 9.59 -15.06 -0.14 -6.81 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -25.39 11.17 55.49 0.62 -24.77 16 22 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.19 4.21 3.66 -3.94 -0.01 4.20 16 27 N -0.36 -4.44 12.06 33.42 0.40 -4.03 16 28 O 0.10 1.02 11.20 17.17 0.19 1.21 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 32 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 34 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.10 1.10 7.95 -51.93 -0.41 0.69 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.77 7.31 -51.93 -0.38 0.39 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 40 H 0.08 1.20 7.70 -51.92 -0.40 0.80 16 41 H 0.08 1.62 7.72 -51.93 -0.40 1.22 16 42 H 0.08 1.70 5.64 -51.93 -0.29 1.41 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.17 6.21 -51.93 -0.32 0.85 16 47 H 0.05 1.09 7.93 -51.92 -0.41 0.68 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.09 2.25 5.90 -51.93 -0.31 1.94 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -32.01 401.59 -9.16 -41.17 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.37 Total: 0.65 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.07 Total: -0.93 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.03 Total: -54.14 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.28 Total: -9.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.01 -9.16 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040388869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.192 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.70 seconds