Wall clock time and date at job start Wed Apr 1 2020 07:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35457 * 126.77681 * 2 1 4 4 C 1.41384 * 103.98218 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.79832 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47265 * 124.99549 * 5 4 3 7 7 C 1.50703 * 109.47117 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00182 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99891 * 179.97438 * 7 6 5 10 10 C 1.48188 * 127.79989 * 359.97438 * 9 7 6 11 11 C 1.54507 * 104.62863 * 140.73535 * 10 9 7 12 12 C 1.53843 * 104.79367 * 23.79851 * 11 10 9 13 13 C 1.48253 * 127.80098 * 180.02562 * 9 7 6 14 14 C 1.52480 * 110.21439 * 240.96093 * 12 11 10 15 15 C 1.53120 * 109.65590 * 178.09138 * 14 12 11 16 16 C 1.52748 * 109.36320 * 60.36416 * 15 14 12 17 17 N 1.46928 * 109.08454 * 305.08154 * 16 15 14 18 18 C 1.36942 * 120.67512 * 234.05325 * 17 16 15 19 19 H 1.07998 * 119.99801 * 27.10927 * 18 17 16 20 20 C 1.38806 * 119.99770 * 207.37453 * 18 17 16 21 21 N 1.31622 * 120.00404 * 16.84896 * 20 18 17 22 22 Si 1.86800 * 119.99762 * 196.84362 * 20 18 17 23 23 H 1.48503 * 109.47438 * 60.00225 * 22 20 18 24 24 H 1.48504 * 109.47353 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47009 * 300.00185 * 22 20 18 26 26 C 1.47022 * 118.64940 * 53.78630 * 17 16 15 27 27 N 1.30168 * 106.39815 * 0.25820 * 4 3 2 28 28 O 1.20927 * 111.60646 * 359.53973 * 27 4 3 29 29 H 1.08996 * 109.47453 * 89.99413 * 1 2 3 30 30 H 1.08999 * 109.46865 * 210.00753 * 1 2 3 31 31 H 1.09007 * 109.46819 * 330.00002 * 1 2 3 32 32 H 1.07995 * 128.00805 * 359.94075 * 3 2 1 33 33 H 1.09003 * 109.47493 * 4.99421 * 5 4 3 34 34 H 1.09001 * 109.47097 * 244.99249 * 5 4 3 35 35 H 1.09003 * 109.46970 * 59.99552 * 6 5 4 36 36 H 1.09002 * 109.47336 * 299.99791 * 6 5 4 37 37 H 1.08995 * 110.40824 * 21.94800 * 10 9 7 38 38 H 1.08999 * 110.40523 * 259.52336 * 10 9 7 39 39 H 1.08994 * 110.37686 * 264.96822 * 11 10 9 40 40 H 1.09008 * 110.46547 * 142.67663 * 11 10 9 41 41 H 1.08995 * 110.42624 * 100.36152 * 13 9 7 42 42 H 1.09002 * 110.42758 * 337.87785 * 13 9 7 43 43 H 1.09001 * 109.44035 * 298.14557 * 14 12 11 44 44 H 1.09003 * 109.43929 * 58.03242 * 14 12 11 45 45 H 1.08999 * 109.49867 * 180.43516 * 15 14 12 46 46 H 1.09000 * 109.49719 * 300.53782 * 15 14 12 47 47 H 1.09009 * 109.49420 * 185.17489 * 16 15 14 48 48 H 1.09001 * 109.42517 * 64.94551 * 16 15 14 49 49 H 0.96996 * 119.99885 * 179.97438 * 21 20 18 50 50 H 1.08995 * 109.57480 * 67.32146 * 26 17 16 51 51 H 1.09000 * 109.57712 * 187.70856 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5372 0.0006 5 6 4.9211 1.3000 0.0014 6 6 5.7790 0.8445 1.1835 7 6 7.0790 1.6068 1.1839 8 8 7.2976 2.4334 0.3238 9 7 7.9984 1.3707 2.1408 10 6 7.9125 0.4096 3.2655 11 6 9.3333 -0.1870 3.3783 12 6 10.2551 0.8720 2.7492 13 6 9.3235 2.0146 2.3064 14 6 10.9822 0.2879 1.5429 15 6 11.8591 1.3653 0.8988 16 6 12.8887 1.8548 1.9153 17 7 12.1909 2.3040 3.1277 18 6 12.4043 3.5591 3.6322 19 1 12.7062 4.3611 2.9749 20 6 12.2379 3.7992 4.9892 21 7 12.2047 2.7925 5.8365 22 14 12.0612 5.5511 5.6129 23 1 10.8703 6.1812 4.9884 24 1 11.8977 5.5370 7.0888 25 1 13.2759 6.3280 5.2573 26 6 11.2542 1.3808 3.7849 27 7 3.4764 -0.7563 -0.0047 28 8 2.3095 -1.0736 0.0006 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5140 31 1 -0.3633 0.8901 0.5139 32 1 2.0345 2.1271 -0.0009 33 1 4.7163 2.3668 0.0909 34 1 5.4548 1.1093 -0.9297 35 1 5.9838 -0.2224 1.0940 36 1 5.2454 1.0351 2.1146 37 1 7.1882 -0.3735 3.0417 38 1 7.6429 0.9259 4.1868 39 1 9.3970 -1.1231 2.8237 40 1 9.5974 -0.3473 4.4237 41 1 9.2777 2.7872 3.0739 42 1 9.6624 2.4366 1.3603 43 1 11.6080 -0.5446 1.8647 44 1 10.2517 -0.0677 0.8163 45 1 12.3716 0.9472 0.0324 46 1 11.2353 2.2020 0.5844 47 1 13.4535 2.6847 1.4903 48 1 13.5673 1.0392 2.1655 49 1 12.0887 2.9604 6.7847 50 1 11.8052 0.5393 4.2049 51 1 10.7222 1.9043 4.5792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040388869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:57:24 Heat of formation + Delta-G solvation = 22.267853 kcal Electronic energy + Delta-G solvation = -31137.746721 eV Core-core repulsion = 27039.865547 eV Total energy + Delta-G solvation = -4097.881173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 14.24 seconds Orbital eigenvalues (eV) -45.90281 -41.49039 -39.85411 -37.35710 -36.31957 -34.87501 -34.40570 -33.19366 -32.32746 -31.82591 -30.14613 -28.65015 -27.95266 -27.22772 -25.56383 -24.38919 -23.99749 -23.86497 -21.95523 -20.84303 -20.09610 -19.63856 -18.63645 -18.62454 -18.37891 -17.91071 -17.14853 -16.71870 -16.48394 -15.92814 -15.81222 -15.57114 -15.32234 -14.90912 -14.67676 -14.58283 -14.42594 -14.33848 -14.00484 -13.95355 -13.84146 -13.62464 -13.33732 -13.20996 -13.11878 -12.95259 -12.85702 -12.68855 -12.56981 -12.45170 -12.44173 -12.12776 -11.96601 -11.86818 -11.77560 -11.40492 -11.12586 -11.07322 -11.04125 -10.84415 -10.52544 -10.22723 -9.74961 -8.65162 -7.87078 -5.29829 0.54305 1.22989 1.44554 1.46519 1.52964 1.56089 1.94551 2.27457 2.50238 3.11839 3.25951 3.40091 3.53246 3.68508 3.77116 3.85976 3.89476 4.01499 4.05323 4.17812 4.24835 4.29718 4.30954 4.39028 4.45839 4.51466 4.55659 4.58729 4.67444 4.74618 4.76302 4.80869 4.84738 4.88902 4.91555 4.94582 4.97009 5.05455 5.09638 5.11172 5.15337 5.24727 5.28862 5.30110 5.33612 5.49036 5.59656 5.66069 5.76498 6.39904 6.58826 7.07838 7.16688 7.33251 7.87377 8.39122 9.18953 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.002296 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.071903 B =12194.364200 C =12802.264351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.026 4.026 3 C -0.242 4.242 4 C 0.012 3.988 5 C -0.021 4.021 6 C -0.115 4.115 7 C 0.528 3.472 8 O -0.588 6.588 9 N -0.622 5.622 10 C 0.103 3.897 11 C -0.120 4.120 12 C -0.087 4.087 13 C 0.135 3.865 14 C -0.087 4.087 15 C -0.130 4.130 16 C 0.142 3.858 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.058 0.942 20 C -0.043 4.043 21 N -0.928 5.928 22 Si 0.957 3.043 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.200 3.800 27 N -0.393 5.393 28 O 0.086 5.914 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.193 0.807 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.044 0.956 47 H 0.047 0.953 48 H 0.018 0.982 49 H 0.251 0.749 50 H 0.003 0.997 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.544 -9.301 -9.103 26.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.264 4.264 4 C -0.146 4.146 5 C -0.059 4.059 6 C -0.155 4.155 7 C 0.319 3.681 8 O -0.469 6.469 9 N -0.354 5.354 10 C -0.019 4.019 11 C -0.158 4.158 12 C -0.090 4.090 13 C 0.013 3.987 14 C -0.124 4.124 15 C -0.168 4.168 16 C 0.016 3.984 17 N -0.332 5.332 18 C -0.389 4.389 19 H 0.076 0.924 20 C -0.239 4.239 21 N -0.574 5.574 22 Si 0.785 3.215 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.075 3.925 27 N -0.099 5.099 28 O 0.021 5.979 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.210 0.790 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.036 0.964 49 H 0.060 0.940 50 H 0.021 0.979 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.652 -9.869 -9.464 26.458 hybrid contribution 0.371 1.977 0.644 2.112 sum -22.280 -7.892 -8.820 25.229 Atomic orbital electron populations 1.20580 0.80896 1.06119 1.05463 1.25280 0.97967 0.85209 1.00513 1.22782 0.90377 1.02440 1.10777 1.23674 0.98007 0.90076 1.02802 1.19631 0.88526 0.99173 0.98571 1.21507 0.91466 1.01213 1.01324 1.20792 0.85338 0.82636 0.79346 1.90679 1.79973 1.37421 1.38869 1.49264 1.17505 1.40824 1.27850 1.22610 0.98484 0.92098 0.88729 1.22539 0.93092 0.97999 1.02194 1.21658 0.95444 0.94690 0.97206 1.22061 0.81582 0.95078 0.99994 1.21301 0.97908 0.97440 0.95791 1.21919 0.98268 0.98380 0.98280 1.20936 0.93269 0.96818 0.87343 1.44288 1.47034 1.13341 1.28506 1.19366 1.41944 0.86811 0.90782 0.92391 1.25612 1.02025 1.00186 0.96095 1.70136 1.54781 1.30848 1.01678 0.85509 0.78146 0.81087 0.76728 1.21074 1.21621 1.20395 1.20552 0.88934 0.90941 0.92116 1.73828 0.97815 1.17003 1.21296 1.84783 1.11228 1.34204 1.67720 0.87910 0.88742 0.87179 0.79019 0.88520 0.90408 0.87566 0.87029 0.87272 0.90570 0.89163 0.89942 0.93796 0.92211 0.91517 0.92245 0.90332 0.93707 0.93429 0.96416 0.94026 0.97900 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.45 71.24 0.74 0.48 16 2 C -0.03 -0.35 7.49 25.04 0.19 -0.16 16 3 C -0.24 -3.68 11.05 22.40 0.25 -3.43 16 4 C 0.01 0.26 6.59 43.58 0.29 0.54 16 5 C -0.02 -0.45 5.10 29.85 0.15 -0.30 16 6 C -0.11 -2.52 4.65 29.85 0.14 -2.38 16 7 C 0.53 16.33 7.91 87.66 0.69 17.03 16 8 O -0.59 -22.96 16.25 -3.02 -0.05 -23.01 16 9 N -0.62 -19.36 3.32 -808.23 -2.68 -22.04 16 10 C 0.10 2.48 6.92 86.57 0.60 3.08 16 11 C -0.12 -3.25 6.29 31.39 0.20 -3.06 16 12 C -0.09 -3.11 0.68 -51.88 -0.04 -3.15 16 13 C 0.14 5.22 5.79 86.36 0.50 5.72 16 14 C -0.09 -2.85 4.48 30.46 0.14 -2.71 16 15 C -0.13 -4.59 5.87 30.55 0.18 -4.41 16 16 C 0.14 6.00 6.47 86.21 0.56 6.56 16 17 N -0.61 -30.36 2.83 -700.76 -1.99 -32.35 16 18 C -0.26 -14.32 9.59 84.03 0.81 -13.51 16 19 H 0.06 3.21 7.88 -2.91 -0.02 3.19 16 20 C -0.04 -2.41 4.92 84.86 0.42 -1.99 16 21 N -0.93 -53.61 11.17 21.65 0.24 -53.36 16 22 Si 0.96 45.27 29.59 68.60 2.03 47.30 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 C 0.20 9.21 3.66 86.16 0.32 9.52 16 27 N -0.39 -9.09 12.06 -49.56 -0.60 -9.69 16 28 O 0.09 1.67 11.20 71.61 0.80 2.47 16 29 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.10 2.04 8.09 -2.39 -0.02 2.02 16 34 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.11 2.16 7.95 -2.39 -0.02 2.14 16 36 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 37 H 0.11 1.89 7.31 -2.39 -0.02 1.87 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 2.07 7.70 -2.39 -0.02 2.05 16 40 H 0.08 2.28 7.70 -2.38 -0.02 2.27 16 41 H 0.04 1.96 7.72 -2.39 -0.02 1.94 16 42 H 0.06 2.56 5.64 -2.39 -0.01 2.55 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.04 1.74 6.21 -2.39 -0.01 1.73 16 47 H 0.05 2.01 7.93 -2.38 -0.02 1.99 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.25 14.06 8.31 -92.71 -0.77 13.28 16 50 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 51 H 0.06 3.06 5.90 -2.39 -0.01 3.05 16 Total: -1.00 -72.37 401.59 4.80 -67.57 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.92 Total: 15.27 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 6.13 Total: 7.83 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -5.02 Total: -117.44 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.75 Total: -20.53 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.37 4.80 -67.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040388869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.837 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.25 seconds