Wall clock time and date at job start Wed Apr 1 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35449 * 125.56166 * 2 1 4 4 C 1.39841 * 107.86171 * 179.69840 * 3 2 1 5 5 C 1.50701 * 126.45563 * 180.29522 * 4 3 2 6 6 C 1.37873 * 107.08507 * 0.42046 * 4 3 2 7 7 C 1.46672 * 126.22893 * 179.84524 * 6 4 3 8 8 O 1.21698 * 120.00165 * 256.22567 * 7 6 4 9 9 N 1.34779 * 120.00180 * 76.23326 * 7 6 4 10 10 C 1.47161 * 121.05788 * 355.12971 * 9 7 6 11 11 C 1.53274 * 108.55477 * 128.88499 * 10 9 7 12 12 H 1.08998 * 109.51221 * 292.93266 * 11 10 9 13 13 C 1.52998 * 109.51283 * 172.83684 * 11 10 9 14 14 O 1.43105 * 109.23496 * 52.86011 * 11 10 9 15 15 C 1.42074 * 114.31448 * 298.84061 * 14 11 10 16 16 C 1.54522 * 110.32055 * 298.11779 * 15 14 11 17 17 C 1.55021 * 101.51987 * 276.05205 * 16 15 14 18 18 N 1.47484 * 104.90101 * 323.62555 * 17 16 15 19 19 C 1.36942 * 125.66062 * 203.98492 * 18 17 16 20 20 H 1.07998 * 119.99728 * 35.01803 * 19 18 17 21 21 C 1.38811 * 119.99802 * 215.01105 * 19 18 17 22 22 N 1.31623 * 119.99696 * 200.89535 * 21 19 18 23 23 Si 1.86797 * 119.99813 * 20.89423 * 21 19 18 24 24 H 1.48503 * 109.47271 * 274.18274 * 23 21 19 25 25 H 1.48501 * 109.47649 * 34.18565 * 23 21 19 26 26 H 1.48508 * 109.47056 * 154.18736 * 23 21 19 27 27 C 1.47185 * 108.67146 * 24.25053 * 18 17 16 28 28 C 1.47308 * 121.05950 * 175.10595 * 9 7 6 29 29 N 1.35533 * 125.56580 * 179.97438 * 2 1 3 30 30 H 0.97000 * 125.67313 * 0.02562 * 29 2 1 31 31 H 1.08997 * 109.47547 * 270.04378 * 1 2 3 32 32 H 1.09002 * 109.46793 * 30.04816 * 1 2 3 33 33 H 1.09000 * 109.46978 * 150.04160 * 1 2 3 34 34 H 1.07999 * 126.07004 * 359.94149 * 3 2 1 35 35 H 1.08997 * 109.47687 * 270.14557 * 5 4 3 36 36 H 1.09003 * 109.47228 * 30.14934 * 5 4 3 37 37 H 1.08998 * 109.46721 * 150.14444 * 5 4 3 38 38 H 1.09003 * 109.61863 * 248.60219 * 10 9 7 39 39 H 1.08996 * 109.62516 * 8.97993 * 10 9 7 40 40 H 1.09001 * 109.46953 * 60.00067 * 13 11 10 41 41 H 1.09000 * 109.47515 * 179.97438 * 13 11 10 42 42 H 1.09007 * 109.47386 * 300.00215 * 13 11 10 43 43 H 1.08998 * 111.01089 * 157.99381 * 16 15 14 44 44 H 1.08995 * 111.01855 * 34.11480 * 16 15 14 45 45 H 1.09006 * 110.34985 * 204.76941 * 17 16 15 46 46 H 1.09001 * 110.35166 * 82.48245 * 17 16 15 47 47 H 0.96998 * 119.99215 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.90849 * 117.63524 * 27 18 17 49 49 H 1.09000 * 109.90911 * 238.89458 * 27 18 17 50 50 H 1.08996 * 109.68415 * 109.70142 * 28 9 7 51 51 H 1.09003 * 109.68372 * 349.14574 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6767 0.0070 5 6 4.8485 1.5592 0.0158 6 6 3.6122 -0.7019 0.0015 7 6 4.7860 -1.5814 0.0025 8 8 5.1265 -2.1430 -1.0221 9 7 5.4876 -1.7677 1.1381 10 6 5.1620 -1.0199 2.3630 11 6 5.0126 -2.0166 3.5178 12 1 4.1352 -2.6408 3.3488 13 6 4.8509 -1.2534 4.8339 14 8 6.1804 -2.8413 3.5828 15 6 6.4139 -3.6176 2.4160 16 6 5.2429 -4.5978 2.1804 17 6 5.6402 -5.7814 3.0994 18 7 7.1097 -5.8604 3.0021 19 6 7.8668 -6.9762 3.2413 20 1 7.4881 -7.9524 2.9771 21 6 9.1209 -6.8522 3.8232 22 7 10.0075 -7.8155 3.6874 23 14 9.5503 -5.3183 4.7990 24 1 10.0509 -4.2684 3.8758 25 1 8.3392 -4.8233 5.5015 26 1 10.6022 -5.6438 5.7954 27 6 7.6278 -4.5393 2.6115 28 6 6.6044 -2.7267 1.1928 29 7 2.2954 -1.1025 0.0005 30 1 1.9834 -2.0209 0.0006 31 1 -0.3634 0.0008 1.0276 32 1 -0.3633 0.8896 -0.5146 33 1 -0.3633 -0.8904 -0.5132 34 1 1.9545 2.1268 -0.0009 35 1 5.1476 1.7760 -1.0097 36 1 4.6197 2.4914 0.5323 37 1 5.6619 1.0485 0.5312 38 1 5.9647 -0.3174 2.5873 39 1 4.2280 -0.4758 2.2224 40 1 3.9633 -0.6229 4.7816 41 1 4.7443 -1.9628 5.6546 42 1 5.7295 -0.6307 5.0032 43 1 5.1990 -4.9106 1.1372 44 1 4.2963 -4.1589 2.4954 45 1 5.1863 -6.7064 2.7436 46 1 5.3385 -5.5809 4.1274 47 1 10.8837 -7.7290 4.0943 48 1 8.2722 -4.1460 3.3978 49 1 8.1843 -4.6201 1.6778 50 1 7.5479 -2.1872 1.2750 51 1 6.6079 -3.3381 0.2904 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071179914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:32 Heat of formation + Delta-G solvation = 1.449086 kcal Electronic energy + Delta-G solvation = -32688.403212 eV Core-core repulsion = 28589.619269 eV Total energy + Delta-G solvation = -4098.783943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.77941 -40.49480 -38.65395 -36.65246 -34.80419 -33.29692 -32.97963 -31.85101 -31.76847 -29.81965 -28.98808 -28.03448 -27.08243 -26.69801 -25.15336 -23.72384 -22.10185 -21.20337 -20.72946 -20.44062 -19.45767 -19.07812 -17.90631 -17.17473 -16.88574 -16.63430 -15.72747 -15.56448 -15.11701 -14.95147 -14.63525 -14.32989 -14.23702 -13.73755 -13.59358 -13.42382 -13.25832 -13.17454 -13.12209 -13.06764 -12.92639 -12.61293 -12.50067 -12.43796 -12.29120 -12.25491 -12.02687 -11.86824 -11.68913 -11.42637 -11.04726 -10.95368 -10.77193 -10.54035 -10.43988 -10.27332 -9.92934 -9.77479 -9.47578 -9.02271 -8.58921 -8.50429 -8.19322 -6.85944 -5.99713 -3.40666 1.59830 2.08332 2.47831 2.76586 3.20004 3.37173 3.49867 3.61375 3.66302 4.30753 4.51088 4.52124 4.56388 4.71287 4.75961 4.85082 4.89850 4.90374 5.01719 5.09477 5.11910 5.14791 5.24157 5.28805 5.39260 5.42356 5.45174 5.47925 5.50655 5.50913 5.60362 5.73685 5.75873 5.77693 5.80732 5.85367 5.99727 6.05674 6.07091 6.13138 6.25404 6.36886 6.54401 6.58774 6.60386 6.71501 6.80479 7.11250 7.16436 7.43749 7.86529 7.89541 8.32840 8.83061 9.65809 10.21984 11.16219 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.003126 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.848321 B = 8955.871471 C = 9121.494433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.036 3.964 3 C -0.197 4.197 4 C -0.115 4.115 5 C -0.087 4.087 6 C -0.035 4.035 7 C 0.592 3.408 8 O -0.526 6.526 9 N -0.599 5.599 10 C 0.079 3.921 11 C 0.069 3.931 12 H 0.064 0.936 13 C -0.142 4.142 14 O -0.352 6.352 15 C 0.096 3.904 16 C -0.154 4.154 17 C 0.134 3.866 18 N -0.604 5.604 19 C -0.249 4.249 20 H 0.085 0.915 21 C 0.034 3.966 22 N -0.902 5.902 23 Si 0.882 3.118 24 H -0.283 1.283 25 H -0.268 1.268 26 H -0.302 1.302 27 C 0.139 3.861 28 C 0.098 3.902 29 N -0.526 5.526 30 H 0.417 0.583 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.140 0.860 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.026 0.974 47 H 0.265 0.735 48 H 0.043 0.957 49 H 0.055 0.945 50 H 0.079 0.921 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.797 21.053 -4.148 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.221 4.221 4 C -0.122 4.122 5 C -0.145 4.145 6 C -0.149 4.149 7 C 0.378 3.622 8 O -0.402 6.402 9 N -0.332 5.332 10 C -0.044 4.044 11 C 0.010 3.990 12 H 0.082 0.918 13 C -0.200 4.200 14 O -0.271 6.271 15 C 0.055 3.945 16 C -0.192 4.192 17 C 0.009 3.991 18 N -0.332 5.332 19 C -0.376 4.376 20 H 0.103 0.897 21 C -0.167 4.167 22 N -0.543 5.543 23 Si 0.713 3.287 24 H -0.210 1.210 25 H -0.194 1.194 26 H -0.230 1.230 27 C 0.014 3.986 28 C -0.025 4.025 29 N -0.121 5.121 30 H 0.255 0.745 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.097 0.903 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.299 20.407 -4.498 27.776 hybrid contribution 0.064 0.465 0.421 0.630 sum -18.235 20.872 -4.077 28.013 Atomic orbital electron populations 1.20373 0.87699 1.03481 1.02900 1.20432 0.93544 0.86007 1.08017 1.20454 0.91590 0.97766 1.12336 1.19780 0.95615 0.90618 1.06231 1.20250 0.93961 0.98109 1.02156 1.19809 0.83898 0.93809 1.17401 1.17158 0.82022 0.79988 0.83057 1.90863 1.69456 1.48414 1.31438 1.48119 1.33401 1.41342 1.10320 1.22568 1.02954 0.94794 0.84129 1.22476 0.89832 0.91534 0.95126 0.91820 1.21703 1.02282 1.00205 0.95763 1.87978 1.44045 1.57364 1.37701 1.22300 0.97806 0.89994 0.84414 1.23257 0.97045 0.97615 1.01289 1.21653 0.86496 0.95120 0.95800 1.44654 1.01166 1.07096 1.80245 1.18532 0.98208 0.85612 1.35262 0.89715 1.25412 0.96644 0.96925 0.97672 1.69841 1.05236 1.34236 1.45025 0.86894 0.77609 0.83282 0.80956 1.21026 1.19359 1.22987 1.21486 0.92270 0.85639 0.99163 1.22266 0.88676 0.91434 1.00099 1.41691 1.04587 1.08714 1.57117 0.74521 0.90730 0.89884 0.91639 0.84182 0.91511 0.91264 0.92124 0.90242 0.88456 0.91074 0.91177 0.91501 0.90537 0.91563 0.93369 0.95573 0.92556 0.93994 0.92705 0.90281 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.41 36.01 0.37 -0.05 16 2 C 0.04 0.30 7.13 -81.95 -0.58 -0.29 16 3 C -0.20 -1.77 10.66 -39.98 -0.43 -2.20 16 4 C -0.11 -1.21 5.53 -104.16 -0.58 -1.79 16 5 C -0.09 -0.80 10.20 36.01 0.37 -0.43 16 6 C -0.03 -0.41 5.23 -81.99 -0.43 -0.84 16 7 C 0.59 8.48 7.20 -12.85 -0.09 8.39 16 8 O -0.53 -9.46 16.62 5.19 0.09 -9.38 16 9 N -0.60 -8.05 2.91 -174.17 -0.51 -8.56 16 10 C 0.08 0.88 5.39 -3.54 -0.02 0.86 16 11 C 0.07 0.86 3.17 -26.59 -0.08 0.78 16 12 H 0.06 0.79 6.13 -51.93 -0.32 0.47 16 13 C -0.14 -1.43 9.57 37.16 0.36 -1.07 16 14 O -0.35 -6.06 9.86 -35.23 -0.35 -6.41 16 15 C 0.10 1.69 0.83 -89.73 -0.07 1.62 16 16 C -0.15 -2.60 5.91 -24.86 -0.15 -2.75 16 17 C 0.13 2.76 7.23 -2.44 -0.02 2.75 16 18 N -0.60 -14.97 2.95 -170.23 -0.50 -15.47 16 19 C -0.25 -7.16 10.48 -15.06 -0.16 -7.32 16 20 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 21 C 0.03 1.01 5.43 -17.43 -0.09 0.92 16 22 N -0.90 -27.93 13.97 55.49 0.78 -27.15 16 23 Si 0.88 23.13 25.00 -169.99 -4.25 18.88 16 24 H -0.28 -7.16 6.68 56.52 0.38 -6.78 16 25 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 27 C 0.14 3.10 5.45 -3.33 -0.02 3.08 16 28 C 0.10 1.52 5.16 -3.85 -0.02 1.50 16 29 N -0.53 -5.02 6.10 -5.70 -0.03 -5.05 16 30 H 0.42 3.31 8.96 -40.82 -0.37 2.94 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.58 7.55 -51.93 -0.39 0.19 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.95 5.93 -51.93 -0.31 0.64 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.08 1.30 7.86 -51.93 -0.41 0.89 16 44 H 0.07 0.98 5.97 -51.93 -0.31 0.67 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 48 H 0.04 1.02 3.57 -51.93 -0.19 0.84 16 49 H 0.06 1.21 7.79 -51.93 -0.40 0.81 16 50 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.11 1.77 6.93 -51.93 -0.36 1.41 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -35.02 396.11 -8.58 -43.60 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.13 Total: 0.42 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.64 Total: 3.16 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.27 Total: -56.23 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.26 Total: -15.79 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.25 Total: 18.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.02 -8.58 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071179914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.049 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds