Wall clock time and date at job start Wed Apr 1 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35449 * 125.56166 * 2 1 4 4 C 1.39841 * 107.86171 * 179.69840 * 3 2 1 5 5 C 1.50701 * 126.45563 * 180.29522 * 4 3 2 6 6 C 1.37873 * 107.08507 * 0.42046 * 4 3 2 7 7 C 1.46672 * 126.22893 * 179.84524 * 6 4 3 8 8 O 1.21698 * 120.00165 * 256.22567 * 7 6 4 9 9 N 1.34779 * 120.00180 * 76.23326 * 7 6 4 10 10 C 1.47161 * 121.05788 * 355.12971 * 9 7 6 11 11 C 1.53274 * 108.55477 * 128.88499 * 10 9 7 12 12 H 1.08998 * 109.51221 * 292.93266 * 11 10 9 13 13 C 1.52998 * 109.51283 * 172.83684 * 11 10 9 14 14 O 1.43105 * 109.23496 * 52.86011 * 11 10 9 15 15 C 1.42074 * 114.31448 * 298.84061 * 14 11 10 16 16 C 1.54522 * 110.32055 * 298.11779 * 15 14 11 17 17 C 1.55021 * 101.51987 * 276.05205 * 16 15 14 18 18 N 1.47484 * 104.90101 * 323.62555 * 17 16 15 19 19 C 1.36942 * 125.66062 * 203.98492 * 18 17 16 20 20 H 1.07998 * 119.99728 * 35.01803 * 19 18 17 21 21 C 1.38811 * 119.99802 * 215.01105 * 19 18 17 22 22 N 1.31623 * 119.99696 * 200.89535 * 21 19 18 23 23 Si 1.86797 * 119.99813 * 20.89423 * 21 19 18 24 24 H 1.48503 * 109.47271 * 274.18274 * 23 21 19 25 25 H 1.48501 * 109.47649 * 34.18565 * 23 21 19 26 26 H 1.48508 * 109.47056 * 154.18736 * 23 21 19 27 27 C 1.47185 * 108.67146 * 24.25053 * 18 17 16 28 28 C 1.47308 * 121.05950 * 175.10595 * 9 7 6 29 29 N 1.35533 * 125.56580 * 179.97438 * 2 1 3 30 30 H 0.97000 * 125.67313 * 0.02562 * 29 2 1 31 31 H 1.08997 * 109.47547 * 270.04378 * 1 2 3 32 32 H 1.09002 * 109.46793 * 30.04816 * 1 2 3 33 33 H 1.09000 * 109.46978 * 150.04160 * 1 2 3 34 34 H 1.07999 * 126.07004 * 359.94149 * 3 2 1 35 35 H 1.08997 * 109.47687 * 270.14557 * 5 4 3 36 36 H 1.09003 * 109.47228 * 30.14934 * 5 4 3 37 37 H 1.08998 * 109.46721 * 150.14444 * 5 4 3 38 38 H 1.09003 * 109.61863 * 248.60219 * 10 9 7 39 39 H 1.08996 * 109.62516 * 8.97993 * 10 9 7 40 40 H 1.09001 * 109.46953 * 60.00067 * 13 11 10 41 41 H 1.09000 * 109.47515 * 179.97438 * 13 11 10 42 42 H 1.09007 * 109.47386 * 300.00215 * 13 11 10 43 43 H 1.08998 * 111.01089 * 157.99381 * 16 15 14 44 44 H 1.08995 * 111.01855 * 34.11480 * 16 15 14 45 45 H 1.09006 * 110.34985 * 204.76941 * 17 16 15 46 46 H 1.09001 * 110.35166 * 82.48245 * 17 16 15 47 47 H 0.96998 * 119.99215 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.90849 * 117.63524 * 27 18 17 49 49 H 1.09000 * 109.90911 * 238.89458 * 27 18 17 50 50 H 1.08996 * 109.68415 * 109.70142 * 28 9 7 51 51 H 1.09003 * 109.68372 * 349.14574 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6767 0.0070 5 6 4.8485 1.5592 0.0158 6 6 3.6122 -0.7019 0.0015 7 6 4.7860 -1.5814 0.0025 8 8 5.1265 -2.1430 -1.0221 9 7 5.4876 -1.7677 1.1381 10 6 5.1620 -1.0199 2.3630 11 6 5.0126 -2.0166 3.5178 12 1 4.1352 -2.6408 3.3488 13 6 4.8509 -1.2534 4.8339 14 8 6.1804 -2.8413 3.5828 15 6 6.4139 -3.6176 2.4160 16 6 5.2429 -4.5978 2.1804 17 6 5.6402 -5.7814 3.0994 18 7 7.1097 -5.8604 3.0021 19 6 7.8668 -6.9762 3.2413 20 1 7.4881 -7.9524 2.9771 21 6 9.1209 -6.8522 3.8232 22 7 10.0075 -7.8155 3.6874 23 14 9.5503 -5.3183 4.7990 24 1 10.0509 -4.2684 3.8758 25 1 8.3392 -4.8233 5.5015 26 1 10.6022 -5.6438 5.7954 27 6 7.6278 -4.5393 2.6115 28 6 6.6044 -2.7267 1.1928 29 7 2.2954 -1.1025 0.0005 30 1 1.9834 -2.0209 0.0006 31 1 -0.3634 0.0008 1.0276 32 1 -0.3633 0.8896 -0.5146 33 1 -0.3633 -0.8904 -0.5132 34 1 1.9545 2.1268 -0.0009 35 1 5.1476 1.7760 -1.0097 36 1 4.6197 2.4914 0.5323 37 1 5.6619 1.0485 0.5312 38 1 5.9647 -0.3174 2.5873 39 1 4.2280 -0.4758 2.2224 40 1 3.9633 -0.6229 4.7816 41 1 4.7443 -1.9628 5.6546 42 1 5.7295 -0.6307 5.0032 43 1 5.1990 -4.9106 1.1372 44 1 4.2963 -4.1589 2.4954 45 1 5.1863 -6.7064 2.7436 46 1 5.3385 -5.5809 4.1274 47 1 10.8837 -7.7290 4.0943 48 1 8.2722 -4.1460 3.3978 49 1 8.1843 -4.6201 1.6778 50 1 7.5479 -2.1872 1.2750 51 1 6.6079 -3.3381 0.2904 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071179914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:30 Heat of formation + Delta-G solvation = -22.478994 kcal Electronic energy + Delta-G solvation = -32689.440812 eV Core-core repulsion = 28589.619269 eV Total energy + Delta-G solvation = -4099.821542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.59932 -41.64294 -39.86432 -38.16778 -35.98644 -34.85501 -33.87378 -33.43475 -32.41140 -31.37427 -30.43272 -28.70479 -28.25062 -27.66637 -26.51846 -25.29781 -23.26458 -22.27390 -22.15059 -21.36719 -20.59853 -19.99643 -19.12421 -18.81001 -18.38720 -17.73490 -17.21072 -16.49304 -16.46696 -16.00630 -15.88527 -15.56145 -15.49822 -15.04239 -14.84329 -14.69495 -14.47401 -14.15259 -14.10168 -13.98758 -13.88526 -13.78579 -13.58949 -13.49915 -13.26023 -13.16754 -13.03183 -12.97007 -12.86616 -12.69066 -12.48576 -12.38817 -12.34190 -12.23120 -11.91579 -11.78254 -11.59959 -11.16709 -11.03382 -10.73103 -9.73243 -9.69837 -8.92483 -8.90935 -8.28662 -5.66652 0.81388 1.11042 1.26663 1.34916 1.49769 1.66228 1.90567 2.36018 2.42417 2.45343 2.95860 3.15614 3.40352 3.44175 3.60794 3.69502 3.75894 3.93525 4.00277 4.08969 4.17887 4.22813 4.30468 4.31282 4.33518 4.49415 4.53095 4.57263 4.62626 4.64599 4.73984 4.76870 4.78895 4.84604 4.85652 4.88840 4.93822 5.01450 5.04671 5.09300 5.14941 5.17768 5.21145 5.27797 5.42242 5.73562 5.93164 6.01803 6.06106 6.09017 6.21746 6.52486 6.70128 6.82321 7.42997 8.07788 8.91544 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.003126 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.848321 B = 8955.871471 C = 9121.494433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.050 3.950 3 C -0.211 4.211 4 C -0.113 4.113 5 C -0.089 4.089 6 C -0.069 4.069 7 C 0.596 3.404 8 O -0.573 6.573 9 N -0.594 5.594 10 C 0.084 3.916 11 C 0.063 3.937 12 H 0.068 0.932 13 C -0.137 4.137 14 O -0.376 6.376 15 C 0.110 3.890 16 C -0.137 4.137 17 C 0.130 3.870 18 N -0.622 5.622 19 C -0.246 4.246 20 H 0.053 0.947 21 C -0.017 4.017 22 N -0.945 5.945 23 Si 0.946 3.054 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.301 1.301 27 C 0.132 3.868 28 C 0.104 3.896 29 N -0.526 5.526 30 H 0.423 0.577 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.161 0.839 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.027 0.973 47 H 0.266 0.734 48 H 0.027 0.973 49 H 0.048 0.952 50 H 0.084 0.916 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.669 24.729 -3.629 33.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.234 4.234 4 C -0.122 4.122 5 C -0.146 4.146 6 C -0.182 4.182 7 C 0.384 3.616 8 O -0.451 6.451 9 N -0.326 5.326 10 C -0.037 4.037 11 C 0.005 3.995 12 H 0.086 0.914 13 C -0.195 4.195 14 O -0.295 6.295 15 C 0.069 3.931 16 C -0.175 4.175 17 C 0.006 3.994 18 N -0.349 5.349 19 C -0.375 4.375 20 H 0.071 0.929 21 C -0.214 4.214 22 N -0.589 5.589 23 Si 0.775 3.225 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.229 1.229 27 C 0.007 3.993 28 C -0.020 4.020 29 N -0.122 5.122 30 H 0.261 0.739 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.178 0.822 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.136 0.864 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.044 0.956 49 H 0.066 0.934 50 H 0.102 0.898 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.206 24.118 -3.961 32.359 hybrid contribution 0.819 -0.675 0.223 1.084 sum -20.388 23.443 -3.738 31.292 Atomic orbital electron populations 1.20512 0.85174 1.04552 1.04136 1.21029 0.94989 0.85319 1.05360 1.20757 0.90883 0.99043 1.12723 1.20062 0.96798 0.90185 1.05114 1.20301 0.93333 0.98852 1.02094 1.19499 0.83906 0.93836 1.21001 1.17512 0.82344 0.79405 0.82317 1.90834 1.70713 1.50486 1.33078 1.48122 1.32523 1.40776 1.11138 1.22683 1.04376 0.94325 0.82364 1.22809 0.88134 0.91466 0.97058 0.91436 1.21737 1.03913 1.00034 0.93780 1.87939 1.46306 1.57982 1.37288 1.21919 0.95656 0.89992 0.85532 1.23143 0.98141 0.95850 1.00350 1.21781 0.84006 0.96875 0.96730 1.44763 1.02841 1.07000 1.80304 1.18447 0.98586 0.86046 1.34384 0.92931 1.25977 0.96715 0.99890 0.98802 1.69946 1.05834 1.36500 1.46626 0.85868 0.77032 0.80163 0.79458 1.19732 1.19658 1.22919 1.21509 0.94286 0.85418 0.98073 1.21996 0.89923 0.91677 0.98359 1.41759 1.03941 1.09472 1.57022 0.73916 0.89290 0.88490 0.90928 0.82156 0.91978 0.89032 0.92902 0.89221 0.86392 0.87760 0.92169 0.91378 0.90620 0.88647 0.93323 0.95536 0.92443 0.95587 0.93366 0.89799 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.41 71.24 0.74 0.24 16 2 C 0.05 0.65 7.13 41.34 0.29 0.94 16 3 C -0.21 -3.04 10.66 22.01 0.23 -2.80 16 4 C -0.11 -2.09 5.53 -19.56 -0.11 -2.20 16 5 C -0.09 -1.40 10.20 71.24 0.73 -0.68 16 6 C -0.07 -1.49 5.23 40.35 0.21 -1.28 16 7 C 0.60 16.48 7.20 86.45 0.62 17.11 16 8 O -0.57 -20.70 16.62 -4.34 -0.07 -20.77 16 9 N -0.59 -15.03 2.91 -823.17 -2.40 -17.43 16 10 C 0.08 1.63 5.39 86.34 0.47 2.10 16 11 C 0.06 1.39 3.17 30.69 0.10 1.48 16 12 H 0.07 1.44 6.13 -2.39 -0.01 1.43 16 13 C -0.14 -2.28 9.57 71.98 0.69 -1.59 16 14 O -0.38 -12.24 9.86 -148.98 -1.47 -13.71 16 15 C 0.11 3.79 0.83 -10.21 -0.01 3.78 16 16 C -0.14 -4.47 5.91 31.80 0.19 -4.28 16 17 C 0.13 5.34 7.23 86.88 0.63 5.97 16 18 N -0.62 -31.31 2.95 -692.49 -2.04 -33.35 16 19 C -0.25 -14.65 10.48 84.03 0.88 -13.77 16 20 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 21 C -0.02 -1.01 5.43 84.86 0.46 -0.55 16 22 N -0.94 -60.37 13.97 21.65 0.30 -60.07 16 23 Si 0.95 48.92 25.00 68.60 1.72 50.63 16 24 H -0.27 -13.32 6.68 99.48 0.66 -12.65 16 25 H -0.27 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 27 C 0.13 5.90 5.45 86.47 0.47 6.37 16 28 C 0.10 3.17 5.16 86.06 0.44 3.61 16 29 N -0.53 -8.70 6.10 -171.94 -1.05 -9.75 16 30 H 0.42 5.77 8.96 -92.71 -0.83 4.94 16 31 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.91 7.55 -2.39 -0.02 0.89 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.12 1.86 5.93 -2.39 -0.01 1.85 16 40 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.08 2.51 7.86 -2.39 -0.02 2.49 16 44 H 0.10 2.57 5.97 -2.39 -0.01 2.56 16 45 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 48 H 0.03 1.27 3.57 -2.38 -0.01 1.26 16 49 H 0.05 2.19 7.79 -2.39 -0.02 2.17 16 50 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.09 3.12 6.93 -2.39 -0.02 3.10 16 Total: -1.00 -78.54 396.11 2.10 -76.44 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.07 Total: 13.54 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 7.04 Total: 14.46 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -5.19 Total: -120.60 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.54 Total: -34.48 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 1.72 Total: 50.63 kcal Total: -78.54 2.10 -76.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071179914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.966 kcal (2) G-P(sol) polarization free energy of solvation -78.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds