Wall clock time and date at job start Wed Apr 1 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38344 * 119.45975 * 2 1 4 4 C 1.38359 * 119.30208 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.85774 * 180.02562 * 4 3 2 6 6 C 1.40027 * 118.28700 * 359.73165 * 4 3 2 7 7 C 1.47840 * 120.55778 * 180.28009 * 6 4 3 8 8 O 1.21551 * 120.00205 * 270.26520 * 7 6 4 9 9 N 1.34782 * 119.99557 * 90.27258 * 7 6 4 10 10 C 1.46505 * 119.99605 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46823 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47550 * 305.00327 * 11 10 9 13 13 C 1.54808 * 109.46922 * 185.00787 * 11 10 9 14 14 N 1.45117 * 109.53757 * 172.11166 * 13 11 10 15 15 C 1.36936 * 118.76197 * 269.29020 * 14 13 11 16 16 H 1.08002 * 119.99547 * 26.09611 * 15 14 13 17 17 C 1.38805 * 120.00511 * 206.09946 * 15 14 13 18 18 N 1.31618 * 120.00048 * 15.46401 * 17 15 14 19 19 Si 1.86804 * 120.00178 * 195.46535 * 17 15 14 20 20 H 1.48504 * 109.46996 * 59.99982 * 19 17 15 21 21 H 1.48507 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47133 * 299.99929 * 19 17 15 23 23 C 1.47510 * 122.48586 * 89.29147 * 14 13 11 24 24 C 1.53571 * 111.02837 * 318.37491 * 23 14 13 25 25 C 1.51535 * 109.57914 * 320.01931 * 24 23 14 26 26 O 1.38018 * 109.47023 * 65.00115 * 11 10 9 27 27 C 1.39517 * 118.88184 * 0.54696 * 6 4 3 28 28 C 1.50698 * 119.72012 * 179.71512 * 27 6 4 29 29 N 1.31696 * 120.56433 * 359.44127 * 27 6 4 30 30 H 1.09009 * 109.47410 * 269.98047 * 1 2 3 31 31 H 1.09001 * 109.47023 * 29.97693 * 1 2 3 32 32 H 1.08998 * 109.47289 * 149.98295 * 1 2 3 33 33 H 1.07996 * 120.35223 * 0.02562 * 3 2 1 34 34 H 1.08994 * 109.47089 * 90.00039 * 5 4 3 35 35 H 1.09001 * 109.47145 * 210.00372 * 5 4 3 36 36 H 1.08998 * 109.47000 * 330.00039 * 5 4 3 37 37 H 0.96999 * 120.00381 * 359.97438 * 9 7 6 38 38 H 1.08992 * 109.47276 * 299.99649 * 10 9 7 39 39 H 1.09004 * 109.47088 * 60.00059 * 10 9 7 40 40 H 1.08998 * 109.46367 * 292.13578 * 13 11 10 41 41 H 1.08995 * 109.45829 * 52.09404 * 13 11 10 42 42 H 0.97001 * 120.00202 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.17113 * 197.97034 * 23 14 13 44 44 H 1.09005 * 109.12305 * 78.74191 * 23 14 13 45 45 H 1.08995 * 109.45402 * 199.98566 * 24 23 14 46 46 H 1.08999 * 109.45366 * 80.05117 * 24 23 14 47 47 H 1.09005 * 109.59162 * 331.61903 * 25 24 23 48 48 H 1.08998 * 109.59176 * 211.18045 * 25 24 23 49 49 H 1.08998 * 109.47007 * 269.72835 * 28 27 6 50 50 H 1.08999 * 109.47679 * 149.72753 * 28 27 6 51 51 H 1.09005 * 109.46832 * 29.72514 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.3475 2.4923 0.0011 6 6 4.2312 -0.0341 0.0068 7 6 5.7082 -0.0967 0.0139 8 8 6.3206 -0.1203 -1.0358 9 7 6.3757 -0.1278 1.1844 10 6 7.8394 -0.1904 1.1915 11 6 8.3418 -0.2143 2.6364 12 1 7.9409 0.6444 3.1748 13 6 9.8887 -0.1530 2.6459 14 7 10.3594 0.0122 4.0086 15 6 10.5407 1.2798 4.4940 16 1 9.9734 2.1017 4.0828 17 6 11.4537 1.5085 5.5142 18 7 12.3541 0.5947 5.8087 19 14 11.4044 3.1130 6.4696 20 1 10.0829 3.2541 7.1323 21 1 12.4756 3.1099 7.4981 22 1 11.6150 4.2502 5.5383 23 6 10.6501 -1.1337 4.8909 24 6 9.5808 -2.2262 4.7454 25 6 8.2128 -1.5853 4.6259 26 8 7.9236 -1.3779 3.2497 27 6 3.4716 -1.2044 0.0006 28 6 4.1626 -2.5436 0.0007 29 7 2.1558 -1.1487 0.0001 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6444 2.1381 0.0004 34 1 4.5343 2.8034 1.0289 35 1 5.2976 2.3453 -0.5124 36 1 3.7722 3.2624 -0.5127 37 1 5.8871 -0.1087 2.0221 38 1 8.1669 -1.0941 0.6776 39 1 8.2430 0.6843 0.6813 40 1 10.2914 -1.0775 2.2322 41 1 10.2223 0.6906 2.0417 42 1 12.9918 0.7543 6.5219 43 1 10.6741 -0.7918 5.9255 44 1 11.6234 -1.5484 4.6285 45 1 9.6026 -2.8745 5.6214 46 1 9.7842 -2.8167 3.8521 47 1 8.2107 -0.6283 5.1479 48 1 7.4614 -2.2435 5.0621 49 1 4.3296 -2.8663 -1.0269 50 1 3.5382 -3.2747 0.5142 51 1 5.1199 -2.4584 0.5150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073709482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:24 Heat of formation + Delta-G solvation = -34.141783 kcal Electronic energy + Delta-G solvation = -31265.607851 eV Core-core repulsion = 27165.280572 eV Total energy + Delta-G solvation = -4100.327279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.04162 -39.42089 -38.65927 -35.30488 -34.65094 -34.48468 -33.99052 -32.12573 -31.52412 -29.52204 -28.79317 -28.03284 -27.42091 -25.63629 -25.23292 -23.16824 -22.29439 -21.39096 -20.91062 -20.36623 -19.58072 -17.85723 -17.29719 -17.01097 -16.31117 -16.02718 -15.44479 -15.21916 -15.12368 -14.91300 -14.57106 -14.43208 -13.97953 -13.73587 -13.59624 -13.48471 -13.37386 -13.23825 -13.07031 -12.98925 -12.67758 -12.52312 -12.31051 -12.22594 -12.13436 -11.99822 -11.91603 -11.44077 -11.24403 -11.01598 -10.91432 -10.70414 -10.34084 -10.23933 -9.91113 -9.79857 -9.77351 -9.72630 -9.58184 -9.03093 -9.01721 -8.86029 -8.47364 -6.80253 -5.88244 -3.33353 0.65169 0.94449 2.51120 3.11624 3.30906 3.37441 3.37483 3.39429 3.89806 4.11441 4.27859 4.30580 4.40169 4.62974 4.77895 5.03508 5.10212 5.12978 5.15196 5.24247 5.26685 5.29959 5.31256 5.39974 5.44769 5.49027 5.56374 5.58007 5.66295 5.74116 5.82246 5.85692 5.89555 5.92837 5.95768 5.99209 6.12380 6.21559 6.30784 6.39023 6.44997 6.52552 6.67012 6.70803 6.78045 7.31236 7.47679 7.59194 7.70870 7.71939 8.13555 8.17744 8.34813 9.12603 9.77337 10.23385 11.19240 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.002525 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.773280 B =11085.616019 C =11770.677111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.146 3.854 3 C -0.185 4.185 4 C 0.001 3.999 5 C -0.126 4.126 6 C -0.186 4.186 7 C 0.569 3.431 8 O -0.534 6.534 9 N -0.710 5.710 10 C 0.131 3.869 11 C 0.067 3.933 12 H 0.052 0.948 13 C 0.128 3.872 14 N -0.591 5.591 15 C -0.267 4.267 16 H 0.066 0.934 17 C 0.008 3.992 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.177 3.823 24 C -0.176 4.176 25 C 0.088 3.912 26 O -0.396 6.396 27 C 0.176 3.824 28 C -0.111 4.111 29 N -0.489 5.489 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.255 0.745 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 -1.576 -8.486 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.008 3.992 3 C -0.204 4.204 4 C -0.007 4.007 5 C -0.182 4.182 6 C -0.191 4.191 7 C 0.353 3.647 8 O -0.411 6.411 9 N -0.360 5.360 10 C 0.007 3.993 11 C 0.005 3.995 12 H 0.069 0.931 13 C -0.001 4.001 14 N -0.312 5.312 15 C -0.397 4.397 16 H 0.083 0.917 17 C -0.191 4.191 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.052 3.948 24 C -0.216 4.216 25 C 0.012 3.988 26 O -0.315 6.315 27 C 0.037 3.963 28 C -0.168 4.168 29 N -0.200 5.200 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.152 -2.500 -9.182 22.286 hybrid contribution 0.528 1.862 1.198 2.276 sum -19.625 -0.638 -7.984 21.196 Atomic orbital electron populations 1.20751 0.88539 1.03617 1.03306 1.21408 0.97110 0.88105 0.92530 1.21739 0.93645 0.99496 1.05558 1.20334 0.93802 0.94469 0.92129 1.20945 1.00407 0.93299 1.03568 1.20680 0.94611 0.94610 1.09241 1.17970 0.86209 0.76279 0.84198 1.90809 1.68998 1.49759 1.31561 1.46057 1.08106 1.73664 1.08192 1.21503 0.78344 1.02799 0.96638 1.22629 0.98713 0.87647 0.90521 0.93062 1.21401 0.90746 0.99780 0.88188 1.43824 1.76601 1.03227 1.07572 1.19162 1.17376 0.85779 1.17349 0.91659 1.25044 0.95390 0.97632 1.01082 1.70057 1.17767 1.34785 1.31940 0.86379 0.77203 0.83403 0.79816 1.21015 1.21559 1.20802 1.21002 0.92742 0.85063 0.96001 1.22768 0.97595 1.00187 1.01002 1.22013 0.95472 1.00053 0.81224 1.86069 1.79259 1.40688 1.25480 1.21307 0.88849 0.94657 0.91461 1.20831 1.00110 0.92106 1.03775 1.67378 1.08829 1.29113 1.14716 0.90111 0.90548 0.90286 0.84317 0.89729 0.90464 0.90367 0.76145 0.90689 0.90033 0.93770 0.92619 0.93467 0.90637 0.95444 0.92097 0.92358 0.92073 0.91243 0.89738 0.89808 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.16 36.01 0.37 -0.32 16 2 C 0.15 1.47 6.78 -82.51 -0.56 0.91 16 3 C -0.18 -1.72 9.43 -39.50 -0.37 -2.09 16 4 C 0.00 0.01 5.95 -103.91 -0.62 -0.61 16 5 C -0.13 -1.16 9.68 36.01 0.35 -0.81 16 6 C -0.19 -2.37 5.65 -104.82 -0.59 -2.96 16 7 C 0.57 8.07 4.35 -12.33 -0.05 8.02 16 8 O -0.53 -9.35 17.11 5.32 0.09 -9.26 16 9 N -0.71 -9.39 5.49 -61.25 -0.34 -9.73 16 10 C 0.13 1.91 5.34 -4.04 -0.02 1.89 16 11 C 0.07 1.12 2.68 -25.78 -0.07 1.05 16 12 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 13 C 0.13 2.55 5.12 -3.83 -0.02 2.53 16 14 N -0.59 -13.94 2.23 -172.03 -0.38 -14.33 16 15 C -0.27 -6.93 9.46 -15.06 -0.14 -7.07 16 16 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 17 C 0.01 0.20 4.89 -17.43 -0.09 0.12 16 18 N -0.90 -25.26 11.00 55.49 0.61 -24.64 16 19 Si 0.90 20.94 29.58 -169.99 -5.03 15.91 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.18 4.05 4.70 -3.19 -0.02 4.04 16 24 C -0.18 -3.22 5.79 -27.18 -0.16 -3.38 16 25 C 0.09 1.51 6.37 36.42 0.23 1.74 16 26 O -0.40 -6.72 9.38 -26.54 -0.25 -6.96 16 27 C 0.18 2.20 6.82 -82.18 -0.56 1.64 16 28 C -0.11 -1.22 9.79 36.00 0.35 -0.87 16 29 N -0.49 -5.95 10.17 -5.42 -0.06 -6.01 16 30 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.85 7.20 -51.93 -0.37 0.47 16 36 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.40 4.91 8.44 -40.82 -0.34 4.57 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 41 H 0.06 1.11 7.98 -51.93 -0.41 0.69 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.08 1.92 6.37 -51.93 -0.33 1.59 16 44 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 47 H 0.06 1.17 7.40 -51.93 -0.38 0.79 16 48 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.08 0.92 7.06 -51.93 -0.37 0.55 16 LS Contribution 409.69 15.07 6.17 6.17 Total: -1.00 -31.14 409.69 -9.65 -40.79 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.51 Total: 4.23 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.97 Total: 3.82 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.16 Total: -54.70 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.16 Total: -16.22 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.14 -9.65 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073709482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.648 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds