Wall clock time and date at job start Wed Apr 1 2020 04:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38344 * 119.45975 * 2 1 4 4 C 1.38359 * 119.30208 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.85774 * 180.02562 * 4 3 2 6 6 C 1.40027 * 118.28700 * 359.73165 * 4 3 2 7 7 C 1.47840 * 120.55778 * 180.28009 * 6 4 3 8 8 O 1.21551 * 120.00205 * 270.26520 * 7 6 4 9 9 N 1.34782 * 119.99557 * 90.27258 * 7 6 4 10 10 C 1.46505 * 119.99605 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46823 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47550 * 305.00327 * 11 10 9 13 13 C 1.54808 * 109.46922 * 185.00787 * 11 10 9 14 14 N 1.45117 * 109.53757 * 172.11166 * 13 11 10 15 15 C 1.36936 * 118.76197 * 269.29020 * 14 13 11 16 16 H 1.08002 * 119.99547 * 26.09611 * 15 14 13 17 17 C 1.38805 * 120.00511 * 206.09946 * 15 14 13 18 18 N 1.31618 * 120.00048 * 15.46401 * 17 15 14 19 19 Si 1.86804 * 120.00178 * 195.46535 * 17 15 14 20 20 H 1.48504 * 109.46996 * 59.99982 * 19 17 15 21 21 H 1.48507 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47133 * 299.99929 * 19 17 15 23 23 C 1.47510 * 122.48586 * 89.29147 * 14 13 11 24 24 C 1.53571 * 111.02837 * 318.37491 * 23 14 13 25 25 C 1.51535 * 109.57914 * 320.01931 * 24 23 14 26 26 O 1.38018 * 109.47023 * 65.00115 * 11 10 9 27 27 C 1.39517 * 118.88184 * 0.54696 * 6 4 3 28 28 C 1.50698 * 119.72012 * 179.71512 * 27 6 4 29 29 N 1.31696 * 120.56433 * 359.44127 * 27 6 4 30 30 H 1.09009 * 109.47410 * 269.98047 * 1 2 3 31 31 H 1.09001 * 109.47023 * 29.97693 * 1 2 3 32 32 H 1.08998 * 109.47289 * 149.98295 * 1 2 3 33 33 H 1.07996 * 120.35223 * 0.02562 * 3 2 1 34 34 H 1.08994 * 109.47089 * 90.00039 * 5 4 3 35 35 H 1.09001 * 109.47145 * 210.00372 * 5 4 3 36 36 H 1.08998 * 109.47000 * 330.00039 * 5 4 3 37 37 H 0.96999 * 120.00381 * 359.97438 * 9 7 6 38 38 H 1.08992 * 109.47276 * 299.99649 * 10 9 7 39 39 H 1.09004 * 109.47088 * 60.00059 * 10 9 7 40 40 H 1.08998 * 109.46367 * 292.13578 * 13 11 10 41 41 H 1.08995 * 109.45829 * 52.09404 * 13 11 10 42 42 H 0.97001 * 120.00202 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.17113 * 197.97034 * 23 14 13 44 44 H 1.09005 * 109.12305 * 78.74191 * 23 14 13 45 45 H 1.08995 * 109.45402 * 199.98566 * 24 23 14 46 46 H 1.08999 * 109.45366 * 80.05117 * 24 23 14 47 47 H 1.09005 * 109.59162 * 331.61903 * 25 24 23 48 48 H 1.08998 * 109.59176 * 211.18045 * 25 24 23 49 49 H 1.08998 * 109.47007 * 269.72835 * 28 27 6 50 50 H 1.08999 * 109.47679 * 149.72753 * 28 27 6 51 51 H 1.09005 * 109.46832 * 29.72514 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.3475 2.4923 0.0011 6 6 4.2312 -0.0341 0.0068 7 6 5.7082 -0.0967 0.0139 8 8 6.3206 -0.1203 -1.0358 9 7 6.3757 -0.1278 1.1844 10 6 7.8394 -0.1904 1.1915 11 6 8.3418 -0.2143 2.6364 12 1 7.9409 0.6444 3.1748 13 6 9.8887 -0.1530 2.6459 14 7 10.3594 0.0122 4.0086 15 6 10.5407 1.2798 4.4940 16 1 9.9734 2.1017 4.0828 17 6 11.4537 1.5085 5.5142 18 7 12.3541 0.5947 5.8087 19 14 11.4044 3.1130 6.4696 20 1 10.0829 3.2541 7.1323 21 1 12.4756 3.1099 7.4981 22 1 11.6150 4.2502 5.5383 23 6 10.6501 -1.1337 4.8909 24 6 9.5808 -2.2262 4.7454 25 6 8.2128 -1.5853 4.6259 26 8 7.9236 -1.3779 3.2497 27 6 3.4716 -1.2044 0.0006 28 6 4.1626 -2.5436 0.0007 29 7 2.1558 -1.1487 0.0001 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6444 2.1381 0.0004 34 1 4.5343 2.8034 1.0289 35 1 5.2976 2.3453 -0.5124 36 1 3.7722 3.2624 -0.5127 37 1 5.8871 -0.1087 2.0221 38 1 8.1669 -1.0941 0.6776 39 1 8.2430 0.6843 0.6813 40 1 10.2914 -1.0775 2.2322 41 1 10.2223 0.6906 2.0417 42 1 12.9918 0.7543 6.5219 43 1 10.6741 -0.7918 5.9255 44 1 11.6234 -1.5484 4.6285 45 1 9.6026 -2.8745 5.6214 46 1 9.7842 -2.8167 3.8521 47 1 8.2107 -0.6283 5.1479 48 1 7.4614 -2.2435 5.0621 49 1 4.3296 -2.8663 -1.0269 50 1 3.5382 -3.2747 0.5142 51 1 5.1199 -2.4584 0.5150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073709482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:21 Heat of formation + Delta-G solvation = -53.402311 kcal Electronic energy + Delta-G solvation = -31266.443050 eV Core-core repulsion = 27165.280572 eV Total energy + Delta-G solvation = -4101.162478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.94347 -40.70280 -39.93154 -37.01248 -35.97501 -35.28351 -34.79447 -33.61260 -33.39150 -30.49886 -29.96771 -28.89268 -28.33263 -27.21910 -26.89297 -24.58647 -23.33381 -22.32969 -22.21817 -21.51919 -21.21286 -18.96566 -18.80529 -18.15122 -17.65126 -17.41979 -16.89492 -16.59115 -16.20517 -15.89610 -15.80561 -15.62739 -15.50475 -15.12340 -14.72881 -14.40318 -14.34259 -14.28258 -14.12755 -13.94993 -13.81591 -13.71143 -13.54614 -13.18222 -13.12809 -13.01747 -13.00052 -12.75145 -12.70358 -12.66909 -12.52108 -12.42617 -12.10627 -11.77123 -11.50406 -11.36932 -11.32338 -10.57732 -10.53819 -10.47004 -10.28717 -10.19605 -9.82530 -8.73318 -7.89840 -5.37260 -0.17291 0.14415 1.40538 1.46069 1.47320 1.54118 2.03758 2.48949 2.56648 2.74194 3.14935 3.25363 3.47528 3.55297 3.59622 3.66806 4.03419 4.05876 4.12805 4.20715 4.31016 4.33304 4.35969 4.48716 4.52024 4.54783 4.56730 4.57986 4.62397 4.65818 4.69506 4.73657 4.81694 4.82217 4.90234 4.94531 5.06880 5.12968 5.14281 5.16454 5.17836 5.21092 5.22990 5.30570 5.46321 5.60587 5.65473 5.74638 6.34566 6.38806 6.73159 6.89684 7.05057 7.13611 7.85825 8.27073 9.15761 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.002525 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.773280 B =11085.616019 C =11770.677111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.138 3.862 3 C -0.178 4.178 4 C -0.007 4.007 5 C -0.123 4.123 6 C -0.208 4.208 7 C 0.578 3.422 8 O -0.572 6.572 9 N -0.700 5.700 10 C 0.141 3.859 11 C 0.087 3.913 12 H 0.046 0.954 13 C 0.124 3.876 14 N -0.605 5.605 15 C -0.270 4.270 16 H 0.069 0.931 17 C -0.046 4.046 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.277 1.277 23 C 0.185 3.815 24 C -0.164 4.164 25 C 0.092 3.908 26 O -0.392 6.392 27 C 0.162 3.838 28 C -0.108 4.108 29 N -0.509 5.509 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.174 0.826 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.250 0.750 43 H 0.046 0.954 44 H -0.007 1.007 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.040 0.960 48 H 0.107 0.893 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.402 -0.723 -8.558 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.001 3.999 3 C -0.198 4.198 4 C -0.015 4.015 5 C -0.179 4.179 6 C -0.214 4.214 7 C 0.364 3.636 8 O -0.452 6.452 9 N -0.350 5.350 10 C 0.017 3.983 11 C 0.025 3.975 12 H 0.063 0.937 13 C -0.004 4.004 14 N -0.327 5.327 15 C -0.400 4.400 16 H 0.086 0.914 17 C -0.241 4.241 18 N -0.580 5.580 19 Si 0.793 3.207 20 H -0.202 1.202 21 H -0.222 1.222 22 H -0.202 1.202 23 C 0.060 3.940 24 C -0.203 4.203 25 C 0.016 3.984 26 O -0.311 6.311 27 C 0.024 3.976 28 C -0.165 4.165 29 N -0.220 5.220 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.191 0.809 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.011 0.989 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.058 0.942 48 H 0.125 0.875 49 H 0.102 0.898 50 H 0.112 0.888 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.343 -1.652 -9.262 25.167 hybrid contribution 1.457 1.592 1.166 2.453 sum -21.886 -0.060 -8.096 23.336 Atomic orbital electron populations 1.20863 0.85979 1.04721 1.04385 1.22083 0.98848 0.87846 0.91103 1.22102 0.92968 1.00719 1.03977 1.20623 0.94806 0.94293 0.91742 1.20969 0.99512 0.93272 1.04186 1.20618 0.93376 0.95798 1.11563 1.18153 0.86899 0.75019 0.83503 1.90783 1.69993 1.51583 1.32834 1.45907 1.07392 1.73217 1.08516 1.21285 0.79303 1.02789 0.94917 1.22286 0.96012 0.87545 0.91610 0.93663 1.21555 0.92885 0.99592 0.86405 1.44025 1.76955 1.02752 1.09008 1.19473 1.16636 0.86851 1.17044 0.91375 1.25769 0.95397 1.00650 1.02307 1.70223 1.18694 1.36617 1.32489 0.85392 0.77052 0.79992 0.78307 1.20186 1.22243 1.20238 1.20776 0.93013 0.85996 0.94185 1.22619 0.96699 0.98720 1.02238 1.22062 0.95673 0.99614 0.81038 1.86101 1.78871 1.40549 1.25572 1.21457 0.89320 0.94921 0.91935 1.20806 0.99803 0.92156 1.03749 1.67436 1.08545 1.30428 1.15607 0.88857 0.88057 0.90611 0.80878 0.88773 0.92693 0.87921 0.75268 0.91066 0.89812 0.93834 0.92951 0.94117 0.93554 0.98869 0.89765 0.92051 0.94179 0.87549 0.89822 0.88764 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.16 71.24 0.72 -0.28 16 2 C 0.14 2.44 6.78 42.57 0.29 2.73 16 3 C -0.18 -2.78 9.43 22.32 0.21 -2.57 16 4 C -0.01 -0.13 5.95 -19.40 -0.12 -0.25 16 5 C -0.12 -2.03 9.68 71.24 0.69 -1.34 16 6 C -0.21 -5.14 5.65 -19.99 -0.11 -5.26 16 7 C 0.58 16.26 4.35 86.78 0.38 16.64 16 8 O -0.57 -20.23 17.11 -3.88 -0.07 -20.30 16 9 N -0.70 -18.01 5.49 -465.97 -2.56 -20.57 16 10 C 0.14 4.04 5.34 86.38 0.46 4.51 16 11 C 0.09 2.85 2.68 31.21 0.08 2.94 16 12 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 13 C 0.12 4.94 5.12 87.26 0.45 5.38 16 14 N -0.61 -29.01 2.23 -698.17 -1.55 -30.57 16 15 C -0.27 -14.17 9.46 84.03 0.80 -13.37 16 16 H 0.07 3.47 7.88 -2.91 -0.02 3.44 16 17 C -0.05 -2.46 4.89 84.86 0.41 -2.05 16 18 N -0.93 -53.98 11.00 21.65 0.24 -53.74 16 19 Si 0.96 43.49 29.58 68.60 2.03 45.52 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 23 C 0.19 8.70 4.70 86.38 0.41 9.11 16 24 C -0.16 -5.82 5.79 30.31 0.18 -5.65 16 25 C 0.09 2.97 6.37 71.50 0.46 3.43 16 26 O -0.39 -12.66 9.38 -117.90 -1.11 -13.77 16 27 C 0.16 3.94 6.82 42.89 0.29 4.23 16 28 C -0.11 -2.34 9.79 71.24 0.70 -1.65 16 29 N -0.51 -11.67 10.17 -171.07 -1.74 -13.41 16 30 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.17 7.20 -2.39 -0.02 1.15 16 36 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.41 9.50 8.44 -92.71 -0.78 8.71 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.04 1.73 8.11 -2.39 -0.02 1.71 16 41 H 0.05 2.10 7.98 -2.39 -0.02 2.08 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.05 2.43 6.37 -2.39 -0.02 2.41 16 44 H -0.01 -0.36 8.04 -2.38 -0.02 -0.38 16 45 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.06 2.16 8.01 -2.39 -0.02 2.14 16 47 H 0.04 1.49 7.40 -2.38 -0.02 1.47 16 48 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 49 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.07 1.63 7.06 -2.38 -0.02 1.61 16 Total: -1.00 -69.14 409.69 1.68 -67.46 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.14 Total: 22.83 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 6.29 Total: 16.55 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -5.61 Total: -118.29 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.17 Total: -34.07 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -69.14 1.68 -67.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073709482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.056 kcal (2) G-P(sol) polarization free energy of solvation -69.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds