Wall clock time and date at job start Wed Apr 1 2020 08:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35455 * 126.77581 * 2 1 4 4 C 1.41376 * 103.98365 * 180.09663 * 3 2 1 5 5 C 1.50696 * 126.80331 * 179.88698 * 4 3 2 6 6 C 1.50706 * 109.47488 * 124.70388 * 5 4 3 7 7 O 1.21279 * 119.99567 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00216 * 180.02562 * 6 5 4 9 9 C 1.47581 * 125.62742 * 359.97438 * 8 6 5 10 10 C 1.54116 * 104.78455 * 203.32556 * 9 8 6 11 11 C 1.54397 * 102.47369 * 323.92276 * 10 9 8 12 12 C 1.47079 * 125.63138 * 180.02562 * 8 6 5 13 13 H 1.08995 * 110.00463 * 59.50675 * 12 8 6 14 14 C 1.53005 * 109.87342 * 298.43214 * 12 8 6 15 15 C 1.52105 * 110.69250 * 206.07752 * 10 9 8 16 16 C 1.53327 * 109.49285 * 295.38651 * 15 10 9 17 17 N 1.46937 * 108.69816 * 306.72309 * 16 15 10 18 18 C 1.36938 * 120.58099 * 234.38685 * 17 16 15 19 19 H 1.07996 * 119.99602 * 151.63040 * 18 17 16 20 20 C 1.38812 * 119.99774 * 331.63801 * 18 17 16 21 21 N 1.31619 * 119.99779 * 342.92744 * 20 18 17 22 22 Si 1.86796 * 119.99762 * 162.93488 * 20 18 17 23 23 H 1.48500 * 109.47341 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47171 * 119.99994 * 22 20 18 25 25 H 1.48507 * 109.46732 * 239.99584 * 22 20 18 26 26 C 1.46941 * 118.84127 * 54.40590 * 17 16 15 27 27 C 1.52097 * 110.68744 * 81.76684 * 10 9 8 28 28 N 1.30182 * 106.39733 * 359.61780 * 4 3 2 29 29 O 1.20915 * 111.60156 * 0.24430 * 28 4 3 30 30 H 1.09005 * 109.47325 * 180.30745 * 1 2 3 31 31 H 1.08994 * 109.47462 * 300.30759 * 1 2 3 32 32 H 1.08998 * 109.46846 * 60.30850 * 1 2 3 33 33 H 1.07994 * 128.00384 * 359.95036 * 3 2 1 34 34 H 1.09002 * 109.46719 * 4.70693 * 5 4 3 35 35 H 1.08998 * 109.47603 * 244.70901 * 5 4 3 36 36 H 1.09005 * 110.36875 * 84.50056 * 9 8 6 37 37 H 1.08999 * 110.37638 * 322.15770 * 9 8 6 38 38 H 1.09002 * 110.73296 * 152.98981 * 11 10 9 39 39 H 1.08995 * 110.72982 * 276.11329 * 11 10 9 40 40 H 1.08999 * 109.47243 * 302.16164 * 14 12 8 41 41 H 1.08999 * 109.47483 * 62.16585 * 14 12 8 42 42 H 1.09004 * 109.46955 * 182.16577 * 14 12 8 43 43 H 1.09004 * 109.46569 * 175.38093 * 15 10 9 44 44 H 1.08998 * 109.46916 * 55.39563 * 15 10 9 45 45 H 1.08995 * 109.59828 * 66.48288 * 16 15 10 46 46 H 1.09001 * 109.60080 * 186.80136 * 16 15 10 47 47 H 0.97000 * 119.99815 * 180.02562 * 21 20 18 48 48 H 1.09007 * 109.60123 * 65.34564 * 26 17 16 49 49 H 1.08999 * 109.60108 * 185.66292 * 26 17 16 50 50 H 1.08997 * 109.46445 * 304.60069 * 27 10 9 51 51 H 1.09001 * 109.46744 * 184.60637 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6213 0.5373 -0.0023 5 6 4.9210 1.3000 -0.0057 6 6 5.7662 0.8575 1.1610 7 8 5.3539 0.0063 1.9201 8 7 6.9802 1.4078 1.3607 9 6 7.6018 2.4478 0.5181 10 6 9.1158 2.3026 0.7670 11 6 9.1735 1.9302 2.2642 12 6 7.9047 1.0701 2.4537 13 1 8.1636 0.0123 2.4097 14 6 7.2557 1.3910 3.8016 15 6 9.8304 3.6221 0.5181 16 6 9.7040 4.0012 -0.9621 17 7 10.1694 2.8719 -1.7790 18 6 11.1465 3.0500 -2.7217 19 1 11.7980 2.2301 -2.9857 20 6 11.2997 4.2845 -3.3378 21 7 10.3297 5.1724 -3.2826 22 14 12.8824 4.6853 -4.2454 23 1 13.8085 3.5275 -4.1606 24 1 12.5770 4.9722 -5.6701 25 1 13.5201 5.8751 -3.6265 26 6 9.5677 1.5483 -1.5670 27 6 9.6951 1.1824 -0.0834 28 7 3.4763 -0.7564 0.0049 29 8 2.3095 -1.0736 0.0063 30 1 -0.3634 -1.0277 0.0055 31 1 -0.3634 0.5186 0.8871 32 1 -0.3633 0.5090 -0.8927 33 1 2.0344 2.1270 -0.0007 34 1 4.7161 2.3673 0.0782 35 1 5.4547 1.1045 -0.9358 36 1 7.2603 3.4371 0.8228 37 1 7.3714 2.2728 -0.5327 38 1 10.0693 1.3490 2.4831 39 1 9.1340 2.8245 2.8860 40 1 6.9834 2.4460 3.8318 41 1 6.3614 0.7810 3.9287 42 1 7.9602 1.1745 4.6047 43 1 10.8840 3.5192 0.7781 44 1 9.3791 4.4011 1.1325 45 1 8.6617 4.2169 -1.1966 46 1 10.3146 4.8804 -1.1678 47 1 10.4366 6.0349 -3.7134 48 1 8.5147 1.5760 -1.8476 49 1 10.0886 0.8082 -2.1745 50 1 9.1494 0.2592 0.1113 51 1 10.7467 1.0427 0.1672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086911390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:09:54 Heat of formation + Delta-G solvation = 43.119036 kcal Electronic energy + Delta-G solvation = -31804.659277 eV Core-core repulsion = 27707.682278 eV Total energy + Delta-G solvation = -4096.976998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -44.96771 -40.58339 -38.52983 -36.08224 -34.69563 -33.52058 -33.12854 -32.08185 -30.93152 -29.93399 -29.13278 -27.94993 -27.23308 -25.75912 -24.30393 -23.27615 -22.65531 -22.04131 -20.99682 -20.09615 -18.94405 -18.08782 -17.75138 -17.31507 -16.89577 -16.53762 -16.01478 -15.17098 -14.88618 -14.79469 -14.28873 -14.14326 -13.93358 -13.80172 -13.56176 -13.42528 -13.33820 -13.17920 -12.98279 -12.84562 -12.63499 -12.59032 -12.42897 -12.17091 -11.84235 -11.73265 -11.51553 -11.24830 -11.15095 -11.03402 -10.86824 -10.75749 -10.48482 -10.28758 -10.22681 -10.19487 -9.88488 -9.64735 -9.56904 -9.39020 -9.37297 -8.52213 -8.49819 -6.69807 -5.83269 -3.25474 1.42051 2.12735 2.70322 3.00732 3.09827 3.34068 3.42735 3.44688 4.04445 4.27460 4.46325 4.52734 4.68531 4.86235 4.90878 4.95297 5.02401 5.07394 5.08865 5.24621 5.29553 5.31435 5.35348 5.35794 5.41031 5.50216 5.54691 5.62028 5.70030 5.74394 5.78029 5.86744 5.93591 5.93849 6.02083 6.05720 6.13095 6.25534 6.27740 6.45541 6.50478 6.56833 6.63452 6.67508 6.80149 6.91167 7.29396 7.57372 7.63983 7.76906 8.24376 8.27859 8.41421 9.17707 9.80726 10.37103 11.25028 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.002758 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.165855 B =10148.623439 C =11528.572561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.228 4.228 4 C 0.032 3.968 5 C -0.061 4.061 6 C 0.533 3.467 7 O -0.534 6.534 8 N -0.610 5.610 9 C 0.105 3.895 10 C -0.053 4.053 11 C -0.122 4.122 12 C 0.138 3.862 13 H 0.072 0.928 14 C -0.160 4.160 15 C -0.126 4.126 16 C 0.170 3.830 17 N -0.590 5.590 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.146 3.854 27 C -0.118 4.118 28 N -0.337 5.337 29 O 0.103 5.897 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.171 0.829 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.018 0.982 46 H 0.088 0.912 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.054 0.946 50 H 0.050 0.950 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.103 -4.830 10.282 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.250 4.250 4 C -0.128 4.128 5 C -0.102 4.102 6 C 0.321 3.679 7 O -0.411 6.411 8 N -0.345 5.345 9 C -0.017 4.017 10 C -0.054 4.054 11 C -0.160 4.160 12 C 0.035 3.965 13 H 0.090 0.910 14 C -0.218 4.218 15 C -0.166 4.166 16 C 0.044 3.956 17 N -0.313 5.313 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.019 3.981 27 C -0.158 4.158 28 N -0.038 5.038 29 O 0.033 5.967 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.188 0.812 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.106 0.894 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.529 -6.200 10.587 19.016 hybrid contribution 0.541 1.244 -0.524 1.454 sum -13.988 -4.956 10.063 17.930 Atomic orbital electron populations 1.20305 0.84183 1.04548 1.03935 1.24459 0.96355 0.86351 1.03327 1.22337 0.91121 1.00997 1.10503 1.22791 0.95984 0.90093 1.03898 1.19997 0.90290 1.00433 0.99431 1.19854 0.80504 0.81452 0.86120 1.90707 1.71339 1.31796 1.47261 1.48633 1.16239 1.40530 1.29057 1.22532 0.93257 0.90404 0.95494 1.20956 0.93239 0.97767 0.93466 1.22826 0.96331 0.99638 0.97240 1.21530 0.89020 0.99336 0.86566 0.91013 1.22126 1.01666 1.01825 0.96202 1.22057 0.99606 0.93720 1.01219 1.20812 0.97871 0.92122 0.84756 1.44044 1.43477 1.03470 1.40312 1.19217 1.06843 0.97357 1.14614 0.91749 1.25026 0.97638 0.98563 0.98355 1.70027 1.30210 1.07597 1.46863 0.86257 0.83482 0.78080 0.79162 1.20288 1.21753 1.21571 1.20941 0.95728 0.89088 0.92310 1.21834 1.00238 0.95778 0.97910 1.73890 0.96244 1.16225 1.17407 1.84860 1.11413 1.33212 1.67167 0.89990 0.89355 0.89255 0.81190 0.86677 0.86728 0.91312 0.89718 0.90287 0.90628 0.92659 0.91578 0.91945 0.92074 0.93010 0.96398 0.89374 0.93708 0.96649 0.92784 0.93129 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.45 36.01 0.38 0.00 16 2 C -0.04 -0.42 7.49 -35.30 -0.26 -0.68 16 3 C -0.23 -2.45 11.05 -39.38 -0.44 -2.88 16 4 C 0.03 0.44 6.10 -82.10 -0.50 -0.06 16 5 C -0.06 -0.78 5.31 -29.03 -0.15 -0.93 16 6 C 0.53 8.20 7.63 -10.98 -0.08 8.12 16 7 O -0.53 -9.96 14.64 5.56 0.08 -9.88 16 8 N -0.61 -8.66 3.06 -163.26 -0.50 -9.16 16 9 C 0.11 1.49 4.68 -2.87 -0.01 1.47 16 10 C -0.05 -0.80 0.54 -154.11 -0.08 -0.88 16 11 C -0.12 -1.54 5.42 -25.24 -0.14 -1.68 16 12 C 0.14 1.85 3.10 -66.85 -0.21 1.65 16 13 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.16 -1.97 9.10 37.16 0.34 -1.63 16 15 C -0.13 -2.13 4.83 -27.02 -0.13 -2.26 16 16 C 0.17 3.69 5.06 -3.63 -0.02 3.67 16 17 N -0.59 -13.84 2.98 -172.13 -0.51 -14.35 16 18 C -0.25 -6.61 9.57 -15.06 -0.14 -6.75 16 19 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 20 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 21 N -0.90 -25.10 11.20 55.49 0.62 -24.48 16 22 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.15 2.89 6.21 -3.63 -0.02 2.86 16 27 C -0.12 -1.95 4.83 -27.02 -0.13 -2.08 16 28 N -0.34 -5.34 11.46 33.42 0.38 -4.95 16 29 O 0.10 1.39 11.20 17.18 0.19 1.58 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.11 1.41 7.86 -51.93 -0.41 1.00 16 36 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 37 H 0.08 1.28 5.58 -51.93 -0.29 0.99 16 38 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 39 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.95 6.90 -51.93 -0.36 0.59 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 45 H 0.02 0.40 7.65 -51.93 -0.40 0.00 16 46 H 0.09 2.20 6.04 -51.93 -0.31 1.89 16 47 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 48 H 0.02 0.31 6.59 -51.92 -0.34 -0.03 16 49 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 50 H 0.05 0.79 7.83 -51.93 -0.41 0.39 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -32.48 397.38 -8.82 -41.30 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.35 Total: -0.06 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.70 Total: -2.09 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.01 Total: -52.94 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.27 Total: -8.30 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.48 -8.82 -41.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086911390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.424 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds