Wall clock time and date at job start Wed Apr 1 2020 08:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35455 * 126.77581 * 2 1 4 4 C 1.41376 * 103.98365 * 180.09663 * 3 2 1 5 5 C 1.50696 * 126.80331 * 179.88698 * 4 3 2 6 6 C 1.50706 * 109.47488 * 124.70388 * 5 4 3 7 7 O 1.21279 * 119.99567 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00216 * 180.02562 * 6 5 4 9 9 C 1.47581 * 125.62742 * 359.97438 * 8 6 5 10 10 C 1.54116 * 104.78455 * 203.32556 * 9 8 6 11 11 C 1.54397 * 102.47369 * 323.92276 * 10 9 8 12 12 C 1.47079 * 125.63138 * 180.02562 * 8 6 5 13 13 H 1.08995 * 110.00463 * 59.50675 * 12 8 6 14 14 C 1.53005 * 109.87342 * 298.43214 * 12 8 6 15 15 C 1.52105 * 110.69250 * 206.07752 * 10 9 8 16 16 C 1.53327 * 109.49285 * 295.38651 * 15 10 9 17 17 N 1.46937 * 108.69816 * 306.72309 * 16 15 10 18 18 C 1.36938 * 120.58099 * 234.38685 * 17 16 15 19 19 H 1.07996 * 119.99602 * 151.63040 * 18 17 16 20 20 C 1.38812 * 119.99774 * 331.63801 * 18 17 16 21 21 N 1.31619 * 119.99779 * 342.92744 * 20 18 17 22 22 Si 1.86796 * 119.99762 * 162.93488 * 20 18 17 23 23 H 1.48500 * 109.47341 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47171 * 119.99994 * 22 20 18 25 25 H 1.48507 * 109.46732 * 239.99584 * 22 20 18 26 26 C 1.46941 * 118.84127 * 54.40590 * 17 16 15 27 27 C 1.52097 * 110.68744 * 81.76684 * 10 9 8 28 28 N 1.30182 * 106.39733 * 359.61780 * 4 3 2 29 29 O 1.20915 * 111.60156 * 0.24430 * 28 4 3 30 30 H 1.09005 * 109.47325 * 180.30745 * 1 2 3 31 31 H 1.08994 * 109.47462 * 300.30759 * 1 2 3 32 32 H 1.08998 * 109.46846 * 60.30850 * 1 2 3 33 33 H 1.07994 * 128.00384 * 359.95036 * 3 2 1 34 34 H 1.09002 * 109.46719 * 4.70693 * 5 4 3 35 35 H 1.08998 * 109.47603 * 244.70901 * 5 4 3 36 36 H 1.09005 * 110.36875 * 84.50056 * 9 8 6 37 37 H 1.08999 * 110.37638 * 322.15770 * 9 8 6 38 38 H 1.09002 * 110.73296 * 152.98981 * 11 10 9 39 39 H 1.08995 * 110.72982 * 276.11329 * 11 10 9 40 40 H 1.08999 * 109.47243 * 302.16164 * 14 12 8 41 41 H 1.08999 * 109.47483 * 62.16585 * 14 12 8 42 42 H 1.09004 * 109.46955 * 182.16577 * 14 12 8 43 43 H 1.09004 * 109.46569 * 175.38093 * 15 10 9 44 44 H 1.08998 * 109.46916 * 55.39563 * 15 10 9 45 45 H 1.08995 * 109.59828 * 66.48288 * 16 15 10 46 46 H 1.09001 * 109.60080 * 186.80136 * 16 15 10 47 47 H 0.97000 * 119.99815 * 180.02562 * 21 20 18 48 48 H 1.09007 * 109.60123 * 65.34564 * 26 17 16 49 49 H 1.08999 * 109.60108 * 185.66292 * 26 17 16 50 50 H 1.08997 * 109.46445 * 304.60069 * 27 10 9 51 51 H 1.09001 * 109.46744 * 184.60637 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6213 0.5373 -0.0023 5 6 4.9210 1.3000 -0.0057 6 6 5.7662 0.8575 1.1610 7 8 5.3539 0.0063 1.9201 8 7 6.9802 1.4078 1.3607 9 6 7.6018 2.4478 0.5181 10 6 9.1158 2.3026 0.7670 11 6 9.1735 1.9302 2.2642 12 6 7.9047 1.0701 2.4537 13 1 8.1636 0.0123 2.4097 14 6 7.2557 1.3910 3.8016 15 6 9.8304 3.6221 0.5181 16 6 9.7040 4.0012 -0.9621 17 7 10.1694 2.8719 -1.7790 18 6 11.1465 3.0500 -2.7217 19 1 11.7980 2.2301 -2.9857 20 6 11.2997 4.2845 -3.3378 21 7 10.3297 5.1724 -3.2826 22 14 12.8824 4.6853 -4.2454 23 1 13.8085 3.5275 -4.1606 24 1 12.5770 4.9722 -5.6701 25 1 13.5201 5.8751 -3.6265 26 6 9.5677 1.5483 -1.5670 27 6 9.6951 1.1824 -0.0834 28 7 3.4763 -0.7564 0.0049 29 8 2.3095 -1.0736 0.0063 30 1 -0.3634 -1.0277 0.0055 31 1 -0.3634 0.5186 0.8871 32 1 -0.3633 0.5090 -0.8927 33 1 2.0344 2.1270 -0.0007 34 1 4.7161 2.3673 0.0782 35 1 5.4547 1.1045 -0.9358 36 1 7.2603 3.4371 0.8228 37 1 7.3714 2.2728 -0.5327 38 1 10.0693 1.3490 2.4831 39 1 9.1340 2.8245 2.8860 40 1 6.9834 2.4460 3.8318 41 1 6.3614 0.7810 3.9287 42 1 7.9602 1.1745 4.6047 43 1 10.8840 3.5192 0.7781 44 1 9.3791 4.4011 1.1325 45 1 8.6617 4.2169 -1.1966 46 1 10.3146 4.8804 -1.1678 47 1 10.4366 6.0349 -3.7134 48 1 8.5147 1.5760 -1.8476 49 1 10.0886 0.8082 -2.1745 50 1 9.1494 0.2592 0.1113 51 1 10.7467 1.0427 0.1672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086911390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:09:52 Heat of formation + Delta-G solvation = 24.788654 kcal Electronic energy + Delta-G solvation = -31805.454142 eV Core-core repulsion = 27707.682278 eV Total energy + Delta-G solvation = -4097.771863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -45.91349 -41.78548 -39.83586 -37.57173 -35.67073 -34.76629 -34.27460 -33.22817 -32.55494 -31.52204 -30.15950 -28.73243 -28.57539 -26.87452 -25.99794 -24.31421 -23.97950 -23.34523 -22.44804 -21.09821 -20.18322 -19.46617 -18.76182 -18.43660 -18.18492 -17.88814 -17.13233 -16.83190 -16.27994 -15.76834 -15.74105 -15.43539 -15.19217 -14.92335 -14.82495 -14.57597 -14.39089 -14.16755 -14.07054 -13.91848 -13.81471 -13.55309 -13.35823 -13.21721 -13.14513 -13.04097 -12.97834 -12.83740 -12.57983 -12.37621 -12.25095 -12.04898 -11.96527 -11.89238 -11.80377 -11.45268 -11.22074 -11.07732 -10.94746 -10.77169 -10.47338 -10.21060 -9.68166 -8.60778 -7.84381 -5.28473 0.58576 1.20247 1.46440 1.49789 1.53454 1.58816 1.96879 2.31428 2.53159 3.12064 3.28643 3.34335 3.52129 3.57501 3.73195 3.83505 3.87732 4.12362 4.13143 4.19501 4.23192 4.27758 4.31248 4.41056 4.47382 4.54280 4.58177 4.63658 4.69912 4.73862 4.77034 4.77792 4.81467 4.91918 4.92363 4.96780 5.02381 5.06882 5.11145 5.21971 5.25687 5.29010 5.32317 5.38488 5.42490 5.42958 5.59065 5.69985 5.86022 6.43679 6.46084 7.08355 7.20214 7.38364 7.91306 8.41546 9.20953 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.002758 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.165855 B =10148.623439 C =11528.572561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.035 4.035 3 C -0.235 4.235 4 C 0.013 3.987 5 C -0.059 4.059 6 C 0.529 3.471 7 O -0.571 6.571 8 N -0.607 5.607 9 C 0.111 3.889 10 C -0.053 4.053 11 C -0.108 4.108 12 C 0.134 3.866 13 H 0.060 0.940 14 C -0.151 4.151 15 C -0.111 4.111 16 C 0.176 3.824 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.059 0.941 20 C -0.045 4.045 21 N -0.929 5.929 22 Si 0.959 3.041 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.289 1.289 26 C 0.144 3.856 27 C -0.105 4.105 28 N -0.385 5.385 29 O 0.086 5.914 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.201 0.799 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.007 0.993 46 H 0.052 0.948 47 H 0.250 0.750 48 H 0.016 0.984 49 H 0.043 0.957 50 H 0.058 0.942 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.880 -4.077 11.628 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 C -0.256 4.256 4 C -0.146 4.146 5 C -0.099 4.099 6 C 0.318 3.682 7 O -0.451 6.451 8 N -0.340 5.340 9 C -0.011 4.011 10 C -0.053 4.053 11 C -0.145 4.145 12 C 0.031 3.969 13 H 0.078 0.922 14 C -0.209 4.209 15 C -0.150 4.150 16 C 0.050 3.950 17 N -0.330 5.330 18 C -0.390 4.390 19 H 0.077 0.923 20 C -0.241 4.241 21 N -0.575 5.575 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.221 1.221 25 H -0.215 1.215 26 C 0.018 3.982 27 C -0.144 4.144 28 N -0.089 5.089 29 O 0.019 5.981 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.218 0.782 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.025 0.975 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.034 0.966 49 H 0.062 0.938 50 H 0.077 0.923 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.307 -5.463 11.946 20.171 hybrid contribution 0.714 0.965 -0.978 1.548 sum -14.593 -4.498 10.968 18.801 Atomic orbital electron populations 1.20571 0.80612 1.05797 1.05785 1.25379 0.98173 0.85272 1.01054 1.22738 0.89719 1.02634 1.10552 1.23198 0.97505 0.90034 1.03825 1.20073 0.89723 1.01906 0.98168 1.20274 0.80792 0.80844 0.86264 1.90689 1.72215 1.33434 1.48757 1.48665 1.16010 1.40198 1.29133 1.22471 0.92658 0.91080 0.94923 1.20861 0.93324 0.96054 0.95107 1.22756 0.96258 1.00392 0.95137 1.21636 0.89342 0.98924 0.86985 0.92233 1.22039 1.01022 1.01735 0.96105 1.21840 0.99920 0.95459 0.97803 1.20664 0.96171 0.90524 0.87612 1.44275 1.43438 1.05003 1.40304 1.19456 1.07392 0.97272 1.14874 0.92330 1.25664 1.00145 0.98654 0.99648 1.70152 1.31648 1.07703 1.47996 0.85335 0.80437 0.77770 0.77649 1.19611 1.22149 1.21543 1.21029 0.95197 0.87318 0.94629 1.21654 1.00412 0.96768 0.95555 1.73873 0.97601 1.17681 1.19768 1.84792 1.11258 1.34575 1.67507 0.89119 0.87467 0.87096 0.78166 0.83837 0.86759 0.89674 0.90897 0.89135 0.88650 0.91869 0.94007 0.89832 0.92571 0.90357 0.97487 0.92963 0.94125 0.96647 0.93809 0.92288 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.45 71.24 0.74 0.19 16 2 C -0.04 -0.67 7.49 25.04 0.19 -0.48 16 3 C -0.24 -4.71 11.05 22.40 0.25 -4.46 16 4 C 0.01 0.36 6.10 43.57 0.27 0.63 16 5 C -0.06 -1.47 5.31 29.10 0.15 -1.31 16 6 C 0.53 16.07 7.63 87.66 0.67 16.74 16 7 O -0.57 -21.59 14.64 -3.03 -0.04 -21.64 16 8 N -0.61 -16.36 3.06 -788.83 -2.41 -18.77 16 9 C 0.11 2.91 4.68 86.55 0.40 3.32 16 10 C -0.05 -1.45 0.54 -51.92 -0.03 -1.48 16 11 C -0.11 -2.36 5.42 31.56 0.17 -2.19 16 12 C 0.13 3.31 3.10 45.37 0.14 3.45 16 13 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 14 C -0.15 -3.38 9.10 71.98 0.65 -2.73 16 15 C -0.11 -3.52 4.83 30.41 0.15 -3.38 16 16 C 0.18 7.60 5.06 86.41 0.44 8.04 16 17 N -0.61 -28.63 2.98 -698.50 -2.08 -30.71 16 18 C -0.26 -13.84 9.57 84.03 0.80 -13.04 16 19 H 0.06 3.12 7.89 -2.91 -0.02 3.10 16 20 C -0.05 -2.45 4.91 84.86 0.42 -2.03 16 21 N -0.93 -52.54 11.20 21.65 0.24 -52.30 16 22 Si 0.96 43.88 29.59 68.60 2.03 45.91 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 C 0.14 5.70 6.21 86.41 0.54 6.23 16 27 C -0.10 -3.32 4.83 30.41 0.15 -3.17 16 28 N -0.39 -12.56 11.46 -49.57 -0.57 -13.13 16 29 O 0.09 2.35 11.20 71.64 0.80 3.15 16 30 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.11 2.82 7.86 -2.39 -0.02 2.80 16 36 H 0.09 2.01 7.97 -2.38 -0.02 2.00 16 37 H 0.07 2.12 5.58 -2.39 -0.01 2.11 16 38 H 0.09 1.84 8.01 -2.39 -0.02 1.82 16 39 H 0.10 1.79 7.70 -2.39 -0.02 1.77 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.04 1.15 6.90 -2.39 -0.02 1.14 16 42 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 45 H 0.01 0.32 7.65 -2.39 -0.02 0.30 16 46 H 0.05 2.64 6.04 -2.39 -0.01 2.63 16 47 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 48 H 0.02 0.62 6.59 -2.38 -0.02 0.61 16 49 H 0.04 1.78 7.93 -2.39 -0.02 1.76 16 50 H 0.06 1.78 7.83 -2.39 -0.02 1.76 16 51 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -73.13 397.38 4.99 -68.15 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.92 Total: 15.01 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 6.10 Total: 4.33 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -4.82 Total: -114.91 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.76 Total: -18.48 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.13 4.99 -68.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086911390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.935 kcal (2) G-P(sol) polarization free energy of solvation -73.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds