Wall clock time and date at job start Wed Apr 1 2020 08:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35441 * 126.78058 * 2 1 4 4 C 1.41386 * 103.98641 * 180.09777 * 3 2 1 5 5 C 1.50699 * 126.80255 * 179.88645 * 4 3 2 6 6 C 1.50709 * 109.46740 * 124.71327 * 5 4 3 7 7 O 1.21280 * 119.99934 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99322 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99453 * 180.02562 * 8 6 5 10 10 H 1.09005 * 112.86516 * 25.33089 * 9 8 6 11 11 C 1.54155 * 113.63896 * 254.06714 * 9 8 6 12 12 H 1.08998 * 114.24853 * 103.68766 * 11 9 8 13 13 C 1.53065 * 111.68676 * 333.42317 * 11 9 8 14 14 C 1.53019 * 109.40784 * 213.59589 * 13 11 9 15 15 C 1.52945 * 108.92837 * 64.65162 * 14 13 11 16 16 N 1.45894 * 109.88858 * 302.64790 * 15 14 13 17 17 C 1.36931 * 118.48643 * 219.31601 * 16 15 14 18 18 H 1.08007 * 120.00423 * 320.20648 * 17 16 15 19 19 C 1.38813 * 120.00155 * 140.19874 * 17 16 15 20 20 N 1.31616 * 120.00227 * 158.46623 * 19 17 16 21 21 Si 1.86802 * 119.99735 * 338.47322 * 19 17 16 22 22 H 1.48503 * 109.47330 * 95.26427 * 21 19 17 23 23 H 1.48502 * 109.47010 * 215.26272 * 21 19 17 24 24 H 1.48490 * 109.47307 * 335.26238 * 21 19 17 25 25 C 1.45096 * 123.02769 * 39.34511 * 16 15 14 26 26 H 1.09003 * 112.24736 * 202.90523 * 25 16 15 27 27 C 1.53673 * 114.63595 * 73.76046 * 25 16 15 28 28 C 1.53003 * 113.77207 * 102.27993 * 27 25 16 29 29 C 1.52998 * 113.67912 * 331.06784 * 27 25 16 30 30 N 1.30175 * 106.39530 * 359.63306 * 4 3 2 31 31 O 1.20923 * 111.59996 * 0.23522 * 30 4 3 32 32 H 1.08993 * 109.47621 * 180.29422 * 1 2 3 33 33 H 1.09002 * 109.46773 * 300.29867 * 1 2 3 34 34 H 1.08999 * 109.47025 * 60.28999 * 1 2 3 35 35 H 1.08000 * 128.01191 * 359.96931 * 3 2 1 36 36 H 1.09007 * 109.47229 * 4.72058 * 5 4 3 37 37 H 1.08997 * 109.47692 * 244.71452 * 5 4 3 38 38 H 0.96993 * 120.00845 * 0.02562 * 8 6 5 39 39 H 1.08997 * 109.47887 * 333.57967 * 13 11 9 40 40 H 1.09002 * 109.48234 * 93.60546 * 13 11 9 41 41 H 1.09000 * 109.56013 * 184.48078 * 14 13 11 42 42 H 1.08995 * 109.56425 * 304.81858 * 14 13 11 43 43 H 1.08997 * 109.40363 * 62.77992 * 15 14 13 44 44 H 1.09007 * 109.40167 * 182.61067 * 15 14 13 45 45 H 0.96997 * 120.00168 * 179.97438 * 20 19 17 46 46 H 1.08992 * 109.47031 * 176.45975 * 28 27 25 47 47 H 1.09000 * 109.46755 * 296.45506 * 28 27 25 48 48 H 1.08995 * 109.47130 * 56.45721 * 28 27 25 49 49 H 1.08992 * 109.47360 * 334.64203 * 29 27 25 50 50 H 1.09000 * 109.47136 * 94.65326 * 29 27 25 51 51 H 1.09003 * 109.46766 * 214.64367 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5370 -0.0023 5 6 4.9212 1.2997 -0.0057 6 6 5.7664 0.8569 1.1608 7 8 5.3540 0.0056 1.9198 8 7 6.9804 1.4071 1.3605 9 6 7.8023 0.9763 2.4942 10 1 7.5680 -0.0348 2.8271 11 6 7.8631 2.0058 3.6401 12 1 7.2456 1.7531 4.5020 13 6 7.6392 3.4320 3.1316 14 6 8.4716 4.4064 3.9676 15 6 9.9553 4.1097 3.7442 16 7 10.2414 2.7216 4.0904 17 6 11.4141 2.4385 4.7384 18 1 12.3234 2.9490 4.4571 19 6 11.4341 1.4956 5.7569 20 7 12.5652 0.9110 6.0903 21 14 9.8557 1.0561 6.6540 22 1 9.2548 -0.1529 6.0355 23 1 10.1576 0.7834 8.0822 24 1 8.8999 2.1884 6.5577 25 6 9.3411 1.6272 3.7792 26 1 9.4979 0.7663 4.4291 27 6 9.3073 1.2275 2.2958 28 6 10.1055 -0.0391 1.9800 29 6 9.6172 2.3822 1.3411 30 7 3.4763 -0.7566 0.0045 31 8 2.3094 -1.0737 0.0060 32 1 -0.3634 -1.0275 0.0053 33 1 -0.3633 0.5185 0.8873 34 1 -0.3633 0.5093 -0.8926 35 1 2.0347 2.1270 -0.0005 36 1 4.7164 2.3671 0.0784 37 1 5.4547 1.1043 -0.9359 38 1 7.3100 2.0883 0.7537 39 1 7.9433 3.4974 2.0870 40 1 6.5832 3.6877 3.2194 41 1 8.2538 5.4293 3.6603 42 1 8.2294 4.2812 5.0229 43 1 10.2051 4.2806 2.6971 44 1 10.5550 4.7691 4.3718 45 1 12.5793 0.2524 6.8023 46 1 9.9830 -0.2926 0.9270 47 1 11.1606 0.1342 2.1916 48 1 9.7415 -0.8610 2.5963 49 1 9.3675 3.3280 1.8217 50 1 10.6778 2.3711 1.0897 51 1 9.0271 2.2698 0.4315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087276202.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:27:49 Heat of formation + Delta-G solvation = 61.700763 kcal Electronic energy + Delta-G solvation = -32311.917963 eV Core-core repulsion = 28215.746729 eV Total energy + Delta-G solvation = -4096.171234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 12.54 seconds Orbital eigenvalues (eV) -45.86609 -42.57102 -40.26850 -36.90376 -35.59119 -34.86687 -34.45736 -34.21603 -32.83164 -31.62517 -30.42127 -28.57252 -28.42831 -27.31276 -26.09569 -24.43001 -24.05811 -23.04595 -21.86425 -21.06488 -20.56171 -19.75071 -18.78671 -18.57960 -18.17509 -17.84719 -17.48559 -16.96051 -16.43929 -16.03069 -15.80036 -15.43892 -15.33355 -15.16574 -14.84164 -14.49051 -14.41219 -14.08475 -14.03967 -13.91869 -13.87848 -13.83134 -13.45088 -13.39780 -13.19944 -13.11970 -12.98721 -12.90775 -12.72624 -12.45694 -12.15396 -12.00420 -11.95674 -11.71343 -11.43366 -11.33087 -11.22260 -11.02937 -10.95577 -10.69619 -10.55980 -10.18532 -9.92427 -8.55931 -8.23818 -5.60454 0.61403 1.21338 1.25882 1.31306 1.40982 1.60295 2.18461 2.34764 2.35585 3.03806 3.18448 3.38973 3.45735 3.54112 3.57540 3.78607 3.83969 3.91926 4.16913 4.17369 4.26614 4.29961 4.36423 4.39292 4.43316 4.53030 4.57649 4.59379 4.70084 4.71031 4.75500 4.76535 4.79426 4.92622 4.94041 4.96755 5.03956 5.06929 5.08131 5.17359 5.26263 5.27239 5.30413 5.31471 5.43129 5.45984 5.56709 5.73865 5.95574 6.20776 6.56821 7.06195 7.26888 7.41516 7.70308 8.05429 8.95403 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.002811 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.663354 B = 9957.739239 C =10158.993403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.232 4.232 4 C 0.013 3.987 5 C -0.056 4.056 6 C 0.509 3.491 7 O -0.585 6.585 8 N -0.692 5.692 9 C 0.143 3.857 10 H 0.076 0.924 11 C -0.136 4.136 12 H 0.047 0.953 13 C -0.093 4.093 14 C -0.132 4.132 15 C 0.137 3.863 16 N -0.590 5.590 17 C -0.250 4.250 18 H 0.051 0.949 19 C -0.009 4.009 20 N -0.944 5.944 21 Si 0.921 3.079 22 H -0.292 1.292 23 H -0.310 1.310 24 H -0.257 1.257 25 C 0.156 3.844 26 H 0.044 0.956 27 C -0.099 4.099 28 C -0.126 4.126 29 C -0.136 4.136 30 N -0.389 5.389 31 O 0.078 5.922 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.206 0.794 36 H 0.161 0.839 37 H 0.138 0.862 38 H 0.418 0.582 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.260 0.740 46 H 0.071 0.929 47 H 0.042 0.958 48 H 0.031 0.969 49 H 0.097 0.903 50 H 0.050 0.950 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.704 8.102 -18.908 31.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.253 4.253 4 C -0.146 4.146 5 C -0.095 4.095 6 C 0.296 3.704 7 O -0.464 6.464 8 N -0.346 5.346 9 C 0.037 3.963 10 H 0.094 0.906 11 C -0.157 4.157 12 H 0.065 0.935 13 C -0.130 4.130 14 C -0.170 4.170 15 C 0.013 3.987 16 N -0.310 5.310 17 C -0.381 4.381 18 H 0.068 0.932 19 C -0.206 4.206 20 N -0.588 5.588 21 Si 0.751 3.249 22 H -0.220 1.220 23 H -0.238 1.238 24 H -0.181 1.181 25 C 0.047 3.953 26 H 0.062 0.938 27 C -0.102 4.102 28 C -0.184 4.184 29 C -0.193 4.193 30 N -0.095 5.095 31 O 0.012 5.988 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.223 0.777 36 H 0.178 0.822 37 H 0.155 0.845 38 H 0.259 0.741 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.050 0.950 49 H 0.115 0.885 50 H 0.069 0.931 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.067 6.424 -18.287 30.129 hybrid contribution -0.033 -0.371 1.437 1.485 sum -23.100 6.053 -16.849 29.226 Atomic orbital electron populations 1.20554 0.81014 1.05571 1.05753 1.25385 0.98143 0.85577 1.01334 1.22776 0.89739 1.02546 1.10285 1.23381 0.97989 0.89864 1.03358 1.20190 0.88954 1.02451 0.97946 1.21095 0.82006 0.80828 0.86465 1.90745 1.72675 1.33913 1.49101 1.45757 1.16621 1.42624 1.29570 1.22216 0.90331 0.96947 0.86850 0.90600 1.23326 0.96443 0.98288 0.97639 0.93482 1.21498 1.00031 0.90322 1.01159 1.21862 0.95636 1.00218 0.99330 1.21207 0.94840 0.83626 0.98991 1.43468 1.19276 1.02028 1.66270 1.18765 0.87191 1.21206 1.10891 0.93161 1.25973 0.97541 0.98896 0.98186 1.69957 1.27903 1.28534 1.32422 0.86188 0.82979 0.78282 0.77423 1.22026 1.23833 1.18103 1.21431 0.89309 0.90337 0.94198 0.93846 1.22846 0.92060 0.96946 0.98388 1.21594 0.99592 0.96104 1.01075 1.22047 1.01760 0.97792 0.97653 1.73894 0.97496 1.18180 1.19889 1.84802 1.11425 1.34776 1.67834 0.89538 0.87808 0.86788 0.77743 0.82168 0.84462 0.74116 0.87859 0.90964 0.88111 0.94625 0.92601 0.93521 0.93074 0.91029 0.93847 0.95009 0.88518 0.93104 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.45 71.24 0.74 0.30 16 2 C -0.04 -0.68 7.49 25.04 0.19 -0.49 16 3 C -0.23 -3.62 11.05 22.40 0.25 -3.37 16 4 C 0.01 0.29 6.10 43.58 0.27 0.56 16 5 C -0.06 -0.87 6.30 29.10 0.18 -0.69 16 6 C 0.51 13.25 7.82 87.66 0.69 13.94 16 7 O -0.58 -22.42 15.21 -3.03 -0.05 -22.47 16 8 N -0.69 -15.91 4.34 -439.30 -1.90 -17.82 16 9 C 0.14 4.66 3.59 45.67 0.16 4.82 16 10 H 0.08 3.00 7.38 -2.38 -0.02 2.99 16 11 C -0.14 -4.77 4.29 -10.31 -0.04 -4.81 16 12 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 13 C -0.09 -2.38 4.66 30.62 0.14 -2.24 16 14 C -0.13 -3.72 6.04 30.58 0.18 -3.53 16 15 C 0.14 4.76 5.65 86.48 0.49 5.25 16 16 N -0.59 -26.25 2.22 -681.27 -1.51 -27.76 16 17 C -0.25 -13.84 9.67 84.03 0.81 -13.03 16 18 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 19 C -0.01 -0.54 5.23 84.86 0.44 -0.10 16 20 N -0.94 -59.60 13.97 21.65 0.30 -59.30 16 21 Si 0.92 48.63 25.09 68.60 1.72 50.35 16 22 H -0.29 -15.54 6.67 99.48 0.66 -14.87 16 23 H -0.31 -16.58 7.11 99.48 0.71 -15.87 16 24 H -0.26 -13.01 7.11 99.48 0.71 -12.30 16 25 C 0.16 6.57 1.98 45.54 0.09 6.66 16 26 H 0.04 2.21 3.89 -2.39 -0.01 2.20 16 27 C -0.10 -3.32 1.36 -51.66 -0.07 -3.39 16 28 C -0.13 -4.55 9.10 71.98 0.66 -3.90 16 29 C -0.14 -3.49 7.00 71.98 0.50 -2.98 16 30 N -0.39 -11.49 11.46 -49.56 -0.57 -12.05 16 31 O 0.08 1.97 11.20 71.63 0.80 2.78 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.16 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.42 6.27 5.61 -92.71 -0.52 5.75 16 39 H 0.10 2.05 3.72 -2.39 -0.01 2.04 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.68 5.84 -2.39 -0.01 1.66 16 44 H 0.05 1.73 7.90 -2.38 -0.02 1.71 16 45 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.03 1.21 8.02 -2.39 -0.02 1.19 16 49 H 0.10 2.36 1.94 -2.39 0.00 2.36 16 50 H 0.05 1.45 8.05 -2.39 -0.02 1.43 16 51 H 0.08 1.37 6.33 -2.39 -0.02 1.36 16 Total: -1.00 -85.07 384.81 4.88 -80.19 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.40 Total: 13.09 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.69 Total: -7.01 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -3.68 Total: -116.93 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.76 Total: -19.69 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.72 Total: 50.35 kcal Total: -85.07 4.88 -80.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087276202.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.887 kcal (2) G-P(sol) polarization free energy of solvation -85.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.54 seconds