Wall clock time and date at job start Wed Apr 1 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40195 * 120.37030 * 2 1 4 4 C 1.35346 * 119.94892 * 179.97438 * 3 2 1 5 5 N 1.35754 * 120.70428 * 359.97438 * 4 3 2 6 6 C 1.46502 * 119.62391 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47225 * 90.00407 * 6 5 4 8 8 O 1.21278 * 119.99897 * 5.01367 * 7 6 5 9 9 N 1.34777 * 120.00024 * 185.01754 * 7 6 5 10 10 C 1.46063 * 120.18485 * 174.85933 * 9 7 6 11 11 C 1.53415 * 110.13717 * 293.06597 * 10 9 7 12 12 C 1.53429 * 108.49766 * 316.33918 * 11 10 9 13 13 C 1.53116 * 109.35564 * 287.64629 * 12 11 10 14 14 C 1.52474 * 109.67164 * 77.03261 * 13 12 11 15 15 C 1.53493 * 109.15269 * 43.92662 * 14 13 12 16 16 H 1.09008 * 109.63353 * 5.48693 * 15 14 13 17 17 N 1.46499 * 109.63363 * 125.88774 * 15 14 13 18 18 C 1.36936 * 119.99880 * 204.99947 * 17 15 14 19 19 H 1.08007 * 119.99993 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00142 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99946 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00044 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47426 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46984 * 120.00600 * 22 20 18 25 25 H 1.48506 * 109.47217 * 240.00021 * 22 20 18 26 26 C 1.47130 * 120.19212 * 354.87456 * 9 7 6 27 27 C 1.34661 * 120.75306 * 0.29445 * 5 4 3 28 28 O 1.22054 * 119.98738 * 179.70303 * 27 5 4 29 29 C 1.36408 * 120.36906 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47178 * 90.00007 * 1 2 3 31 31 H 1.09000 * 109.47085 * 209.99464 * 1 2 3 32 32 H 1.08998 * 109.47189 * 329.99498 * 1 2 3 33 33 H 1.08001 * 120.02243 * 359.96470 * 3 2 1 34 34 H 1.07998 * 119.64573 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.47363 * 329.99968 * 6 5 4 36 36 H 1.09008 * 109.47144 * 209.99761 * 6 5 4 37 37 H 1.08999 * 109.36224 * 53.27834 * 10 9 7 38 38 H 1.09002 * 109.35672 * 173.00266 * 10 9 7 39 39 H 1.09003 * 109.62619 * 196.63572 * 11 10 9 40 40 H 1.08993 * 109.62880 * 76.04480 * 11 10 9 41 41 H 1.08998 * 109.49064 * 167.68506 * 12 11 10 42 42 H 1.08995 * 109.49350 * 47.61050 * 12 11 10 43 43 H 1.09009 * 109.43880 * 197.09463 * 13 12 11 44 44 H 1.08999 * 109.43892 * 317.00732 * 13 12 11 45 45 H 1.09002 * 109.52324 * 163.83081 * 14 13 12 46 46 H 1.09003 * 109.52456 * 284.02727 * 14 13 12 47 47 H 0.96996 * 120.00383 * 25.00492 * 17 15 14 48 48 H 0.97001 * 119.99908 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.84724 * 348.33708 * 26 9 7 50 50 H 1.08998 * 109.85350 * 227.34612 * 26 9 7 51 51 H 1.07996 * 120.34285 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1996 0.0005 5 7 4.2537 0.0273 0.0016 6 6 5.7187 0.0442 0.0027 7 6 6.2199 0.0505 1.4239 8 8 5.4360 -0.0500 2.3438 9 7 7.5393 0.1678 1.6726 10 6 8.0198 0.2872 3.0468 11 6 7.5600 1.6193 3.6532 12 6 7.7690 2.7263 2.6116 13 6 9.2662 3.0144 2.4707 14 6 9.9232 1.9201 1.6367 15 6 9.0361 1.6110 0.4228 16 1 8.2006 2.3106 0.3920 17 7 9.8243 1.7313 -0.8063 18 6 9.2024 2.0107 -1.9938 19 1 8.1309 2.1427 -2.0244 20 6 9.9491 2.1241 -3.1585 21 7 11.2548 1.9627 -3.1214 22 14 9.1008 2.5059 -4.7784 23 1 7.6394 2.6408 -4.5522 24 1 9.6354 3.7771 -5.3295 25 1 9.3536 1.4040 -5.7413 26 6 8.5038 0.1768 0.5616 27 6 3.6016 -1.1509 -0.0038 28 8 4.2312 -2.1965 -0.0083 29 6 2.1966 -1.1769 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6822 2.1486 -0.0006 34 1 4.1103 2.1343 0.0009 35 1 6.0721 0.9380 -0.5112 36 1 6.0926 -0.8419 -0.5105 37 1 7.6237 -0.5363 3.6409 38 1 9.1091 0.2464 3.0535 39 1 8.1487 1.8386 4.5440 40 1 6.5037 1.5572 3.9149 41 1 7.2533 3.6309 2.9339 42 1 7.3691 2.4020 1.6510 43 1 9.4056 3.9777 1.9798 44 1 9.7250 3.0413 3.4591 45 1 10.9014 2.2595 1.2961 46 1 10.0388 1.0208 2.2417 47 1 10.7866 1.6130 -0.7788 48 1 11.7766 2.0416 -3.9353 49 1 8.0081 -0.1249 -0.3612 50 1 9.3266 -0.5039 0.7802 51 1 1.6683 -2.1188 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088392742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:35 Heat of formation + Delta-G solvation = -8.420741 kcal Electronic energy + Delta-G solvation = -32456.722233 eV Core-core repulsion = 28357.510302 eV Total energy + Delta-G solvation = -4099.211931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.52585 -40.19145 -37.74661 -36.98304 -35.34464 -34.65142 -34.13550 -32.20962 -30.67794 -29.79647 -29.38902 -27.84511 -26.72551 -26.16619 -24.07863 -23.72200 -22.46528 -21.74270 -21.22845 -19.85223 -18.82195 -17.58725 -17.51147 -17.31323 -16.88715 -16.05609 -15.74737 -15.66637 -15.39788 -15.05925 -14.66860 -14.29462 -14.25052 -14.10202 -13.75336 -13.66877 -13.41879 -13.27698 -13.03435 -12.78455 -12.55121 -12.37229 -12.19855 -12.02423 -11.84296 -11.75798 -11.69108 -11.66956 -11.23486 -11.10678 -11.01263 -10.85249 -10.51730 -10.28530 -10.22545 -9.93717 -9.91299 -9.84346 -9.65351 -9.40586 -9.20757 -8.46798 -7.96615 -7.10425 -5.92329 -3.22634 0.80316 1.88409 2.47218 2.68100 3.18394 3.33390 3.38159 3.41771 3.69133 4.42979 4.46005 4.53343 4.54592 4.72805 4.90487 4.95351 5.06098 5.10503 5.14407 5.18035 5.19656 5.32928 5.33160 5.35945 5.42666 5.45240 5.50341 5.61004 5.62917 5.69269 5.79941 5.84333 5.89120 5.96446 5.98161 6.02691 6.13188 6.15812 6.24551 6.30148 6.32991 6.42842 6.49266 6.55338 6.61313 6.71276 6.89778 7.09187 7.48142 7.53912 8.09148 8.23917 8.26165 9.37371 9.93180 10.27074 11.29614 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008626 B = 0.004116 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.046395 B = 6800.387695 C = 8925.382072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.015 3.985 3 C -0.235 4.235 4 C 0.150 3.850 5 N -0.478 5.478 6 C 0.068 3.932 7 C 0.506 3.494 8 O -0.536 6.536 9 N -0.597 5.597 10 C 0.112 3.888 11 C -0.133 4.133 12 C -0.130 4.130 13 C -0.112 4.112 14 C -0.136 4.136 15 C 0.159 3.841 16 H 0.063 0.937 17 N -0.718 5.718 18 C -0.249 4.249 19 H 0.069 0.931 20 C -0.006 4.006 21 N -0.926 5.926 22 Si 0.903 3.097 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.077 3.923 27 C 0.522 3.478 28 O -0.553 6.553 29 C -0.250 4.250 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.386 0.614 48 H 0.257 0.743 49 H 0.086 0.914 50 H 0.073 0.927 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 0.963 10.271 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.011 3.989 3 C -0.259 4.259 4 C 0.023 3.977 5 N -0.188 5.188 6 C -0.057 4.057 7 C 0.292 3.708 8 O -0.413 6.413 9 N -0.330 5.330 10 C -0.011 4.011 11 C -0.171 4.171 12 C -0.167 4.167 13 C -0.150 4.150 14 C -0.174 4.174 15 C 0.048 3.952 16 H 0.081 0.919 17 N -0.359 5.359 18 C -0.380 4.380 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.574 5.574 22 Si 0.734 3.266 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.049 4.049 27 C 0.325 3.675 28 O -0.436 6.436 29 C -0.272 4.272 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.220 0.780 48 H 0.067 0.933 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.026 0.265 10.596 17.580 hybrid contribution 0.110 0.249 -1.014 1.050 sum -13.916 0.514 9.582 16.904 Atomic orbital electron populations 1.20907 0.90529 1.03381 1.02962 1.20171 0.96607 0.92710 0.89426 1.20471 0.92296 0.98826 1.14261 1.21938 0.93624 0.89689 0.92492 1.45085 1.07494 1.07184 1.58997 1.21961 0.78982 1.07915 0.96885 1.20520 0.82690 0.76763 0.90787 1.90689 1.55184 1.49531 1.45929 1.48052 1.05633 1.71383 1.07975 1.21632 0.99968 0.97563 0.81902 1.22075 1.02008 0.94853 0.98181 1.21958 0.96770 0.97678 1.00288 1.21472 0.95074 0.99111 0.99343 1.22254 0.99856 0.98482 0.96835 1.21109 0.94372 0.92841 0.86919 0.91915 1.42549 1.06537 1.84274 1.02515 1.19194 0.91941 1.41285 0.85571 0.91269 1.24738 0.95482 1.02162 0.97896 1.69658 1.04375 1.55774 1.27561 0.86196 0.78474 0.77691 0.84228 1.20527 1.21763 1.21720 1.23317 0.91958 1.01725 0.87853 1.17057 0.89290 0.82495 0.78673 1.90944 1.69190 1.30315 1.53105 1.21881 0.92316 0.99418 1.13597 0.90203 0.90960 0.90861 0.83839 0.82172 0.85654 0.85153 0.91911 0.89042 0.91320 0.91391 0.92879 0.90337 0.92104 0.92611 0.91272 0.91861 0.77997 0.93348 0.89604 0.90817 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.03 36.00 0.36 -0.49 16 2 C 0.01 0.15 5.89 -104.55 -0.62 -0.46 16 3 C -0.24 -2.32 9.71 -39.88 -0.39 -2.71 16 4 C 0.15 1.69 10.28 -16.85 -0.17 1.52 16 5 N -0.48 -6.92 2.09 -121.07 -0.25 -7.17 16 6 C 0.07 0.98 4.19 -5.19 -0.02 0.96 16 7 C 0.51 7.99 6.89 -10.98 -0.08 7.92 16 8 O -0.54 -9.89 15.47 5.56 0.09 -9.80 16 9 N -0.60 -8.54 1.72 -172.89 -0.30 -8.84 16 10 C 0.11 1.44 5.12 -4.06 -0.02 1.41 16 11 C -0.13 -1.60 5.56 -26.29 -0.15 -1.75 16 12 C -0.13 -1.63 5.44 -26.45 -0.14 -1.77 16 13 C -0.11 -1.42 5.67 -26.94 -0.15 -1.58 16 14 C -0.14 -1.95 5.24 -26.74 -0.14 -2.09 16 15 C 0.16 2.64 2.40 -67.36 -0.16 2.48 16 16 H 0.06 1.08 5.39 -51.92 -0.28 0.80 16 17 N -0.72 -15.63 5.09 -52.86 -0.27 -15.90 16 18 C -0.25 -6.11 9.94 -15.06 -0.15 -6.26 16 19 H 0.07 1.62 7.83 -52.48 -0.41 1.20 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 21 N -0.93 -26.07 13.06 55.49 0.72 -25.34 16 22 Si 0.90 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.08 1.17 5.38 -3.38 -0.02 1.15 16 27 C 0.52 8.73 7.38 -15.45 -0.11 8.62 16 28 O -0.55 -11.26 16.63 4.87 0.08 -11.18 16 29 C -0.25 -3.38 9.65 -39.38 -0.38 -3.76 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.07 0.42 8.10 -51.93 -0.42 -0.01 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.16 1.36 8.04 -52.49 -0.42 0.94 16 35 H 0.13 1.58 7.85 -51.93 -0.41 1.17 16 36 H 0.13 2.01 6.87 -51.92 -0.36 1.65 16 37 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.09 1.06 5.06 -51.93 -0.26 0.79 16 39 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 40 H 0.07 0.93 7.39 -51.93 -0.38 0.55 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.10 3.68 -51.93 -0.19 0.91 16 43 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 44 H 0.06 0.62 7.85 -51.93 -0.41 0.22 16 45 H 0.07 1.09 7.60 -51.93 -0.39 0.69 16 46 H 0.06 0.81 4.49 -51.93 -0.23 0.58 16 47 H 0.39 9.15 7.52 -40.82 -0.31 8.85 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.09 1.38 6.09 -51.93 -0.32 1.07 16 50 H 0.07 1.11 7.97 -51.93 -0.41 0.69 16 51 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -32.84 393.81 -9.16 -42.00 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -7.70 Total: 11.50 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.43 Total: 2.95 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.10 Total: -57.25 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.17 Total: -20.98 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.84 -9.16 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088392742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.577 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds