Wall clock time and date at job start Wed Apr 1 2020 04:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37994 * 120.82503 * 2 1 4 4 C 1.39122 * 119.26703 * 180.02562 * 3 2 1 5 5 O 1.35493 * 119.52521 * 179.97438 * 4 3 2 6 6 N 1.32444 * 120.94947 * 0.02562 * 4 3 2 7 7 C 1.31634 * 121.79662 * 359.70339 * 6 4 3 8 8 C 1.50703 * 119.68762 * 180.28695 * 7 6 4 9 9 C 1.39567 * 120.62767 * 0.58446 * 7 6 4 10 10 C 1.47615 * 120.49942 * 179.70583 * 9 7 6 11 11 O 1.21589 * 119.99694 * 238.31267 * 10 9 7 12 12 N 1.34684 * 120.00202 * 58.30218 * 10 9 7 13 13 C 1.45338 * 121.27674 * 191.93832 * 12 10 9 14 14 C 1.51959 * 115.90534 * 279.09045 * 13 12 10 15 15 C 1.52336 * 113.38486 * 347.67039 * 14 13 12 16 16 C 1.52542 * 111.43747 * 275.07253 * 15 14 13 17 17 C 1.51567 * 112.34384 * 55.76034 * 16 15 14 18 18 C 1.53996 * 111.18397 * 64.93442 * 17 16 15 19 19 H 1.10364 * 107.48195 * 132.25557 * 18 17 16 20 20 N 1.44677 * 113.49364 * 11.91211 * 18 17 16 21 21 C 1.36933 * 119.99970 * 95.33689 * 20 18 17 22 22 H 1.08004 * 120.00489 * 22.17513 * 21 20 18 23 23 C 1.38813 * 120.00295 * 202.17932 * 21 20 18 24 24 N 1.31626 * 119.99451 * 12.78883 * 23 21 20 25 25 Si 1.86798 * 120.00315 * 192.79330 * 23 21 20 26 26 H 1.48501 * 109.47117 * 59.99790 * 25 23 21 27 27 H 1.48504 * 109.47263 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46862 * 299.99471 * 25 23 21 29 29 C 1.48409 * 120.00910 * 7.50137 * 12 10 9 30 30 H 1.09004 * 109.46926 * 277.55821 * 1 2 3 31 31 H 1.09000 * 109.47185 * 37.55348 * 1 2 3 32 32 H 1.09001 * 109.47880 * 157.56167 * 1 2 3 33 33 H 1.07999 * 120.36792 * 0.02562 * 3 2 1 34 34 H 0.96701 * 114.00335 * 90.00416 * 5 4 3 35 35 H 1.09000 * 109.47073 * 278.12950 * 8 7 6 36 36 H 1.08999 * 109.46856 * 38.12912 * 8 7 6 37 37 H 1.09003 * 109.47322 * 158.12596 * 8 7 6 38 38 H 1.10141 * 108.24222 * 41.57310 * 13 12 10 39 39 H 1.10066 * 108.44547 * 156.27329 * 13 12 10 40 40 H 1.10067 * 109.18025 * 109.28092 * 14 13 12 41 41 H 1.09965 * 109.33488 * 225.70287 * 14 13 12 42 42 H 1.07931 * 111.97546 * 41.34992 * 15 14 13 43 43 H 1.10881 * 107.70435 * 157.57859 * 15 14 13 44 44 H 1.10041 * 108.42855 * 295.74059 * 16 15 14 45 45 H 1.09166 * 109.89209 * 178.98397 * 16 15 14 46 46 H 1.09054 * 110.17003 * 303.73110 * 17 16 15 47 47 H 1.09529 * 109.43819 * 184.76425 * 17 16 15 48 48 H 0.96998 * 119.99788 * 275.33495 * 20 18 17 49 49 H 0.97001 * 119.99834 * 174.95785 * 24 23 21 50 50 H 1.08741 * 109.26755 * 337.68630 * 29 12 10 51 51 H 1.08628 * 109.53715 * 216.20165 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3076 -0.0011 6 7 4.2548 -0.0068 -0.0016 7 6 3.6204 -1.1602 0.0037 8 6 4.4079 -2.4451 0.0088 9 6 2.2255 -1.2044 -0.0017 10 6 1.5170 -2.4995 -0.0023 11 8 0.7435 -2.7688 -0.9009 12 7 1.7276 -3.3828 0.9924 13 6 1.2546 -4.7537 0.8967 14 6 -0.2119 -4.9747 1.2277 15 6 -0.8702 -3.7713 1.8903 16 6 -0.6400 -3.7699 3.3983 17 6 0.8317 -3.8249 3.7565 18 6 1.5664 -2.5552 3.2880 19 1 2.1772 -2.1945 4.1335 20 7 0.6756 -1.4943 2.8706 21 6 0.3219 -0.5099 3.7543 22 1 0.9464 -0.3032 4.6109 23 6 -0.8395 0.2223 3.5494 24 7 -1.7256 -0.1833 2.6646 25 14 -1.1447 1.7832 4.5292 26 1 -0.0553 2.7563 4.2620 27 1 -2.4459 2.3744 4.1257 28 1 -1.1755 1.4599 5.9782 29 6 2.5392 -2.9927 2.1720 30 1 -0.3633 0.1352 1.0188 31 1 -0.3633 0.8147 -0.6264 32 1 -0.3635 -0.9498 -0.3922 33 1 1.6937 2.1313 0.0004 34 1 4.5078 2.6446 0.8822 35 1 4.7211 -2.6833 -1.0077 36 1 5.2873 -2.3297 0.6424 37 1 3.7848 -3.2516 0.3954 38 1 1.4454 -5.1137 -0.1266 39 1 1.8688 -5.3811 1.5606 40 1 -0.7588 -5.2164 0.3036 41 1 -0.3082 -5.8474 1.8899 42 1 -0.5646 -2.8419 1.4345 43 1 -1.9634 -3.8502 1.7228 44 1 -1.1387 -4.6521 3.8271 45 1 -1.1059 -2.8892 3.8443 46 1 1.2977 -4.6983 3.2989 47 1 0.9395 -3.9075 4.8433 48 1 0.3289 -1.4804 1.9648 49 1 -2.5694 0.2863 2.5729 50 1 3.1859 -2.1608 1.9034 51 1 3.1256 -3.8435 2.5069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088428805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:30 Heat of formation + Delta-G solvation = -14.419085 kcal Electronic energy + Delta-G solvation = -34793.639112 eV Core-core repulsion = 30694.167074 eV Total energy + Delta-G solvation = -4099.472038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -41.01231 -39.45422 -37.39388 -36.84132 -34.78016 -34.02114 -33.52305 -32.20012 -31.43639 -29.45713 -28.16976 -27.54119 -26.98981 -26.27706 -24.00796 -23.50406 -22.32118 -20.94351 -20.35743 -19.63293 -18.58790 -18.11435 -17.54804 -17.08838 -16.66007 -15.80044 -15.40773 -15.18193 -14.72492 -14.54713 -14.22143 -14.05273 -13.75946 -13.61920 -13.38681 -13.35774 -12.96240 -12.75673 -12.49326 -12.39299 -12.23684 -12.10637 -11.81022 -11.71175 -11.59347 -11.32752 -11.29143 -11.22484 -11.06346 -10.83353 -10.82382 -10.50350 -10.18573 -10.02586 -9.85015 -9.76055 -9.65541 -9.31949 -9.09999 -9.06925 -8.73719 -8.52120 -8.23029 -6.93843 -5.91412 -3.25607 1.01172 1.52947 2.93755 3.23152 3.31991 3.38683 3.40122 3.68562 3.97167 4.45029 4.66854 4.69908 4.92093 5.11987 5.28497 5.32155 5.34386 5.44993 5.50152 5.53417 5.57580 5.60091 5.62825 5.66867 5.69161 5.79140 5.91824 5.98146 6.02361 6.08170 6.10226 6.16127 6.23210 6.32004 6.39879 6.44576 6.55570 6.61043 6.65298 6.70533 6.76058 6.84921 6.99343 7.04925 7.26998 7.39871 7.48276 7.61916 7.65746 7.68997 8.08276 8.37740 8.49402 9.36568 9.98398 10.37024 11.24579 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008235 B = 0.007472 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.475758 B = 3746.209866 C = 5817.434881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.054 3.946 3 C -0.196 4.196 4 C 0.326 3.674 5 O -0.485 6.485 6 N -0.516 5.516 7 C 0.182 3.818 8 C -0.121 4.121 9 C -0.188 4.188 10 C 0.580 3.420 11 O -0.531 6.531 12 N -0.593 5.593 13 C 0.126 3.874 14 C -0.126 4.126 15 C -0.097 4.097 16 C -0.090 4.090 17 C -0.137 4.137 18 C 0.159 3.841 19 H 0.052 0.948 20 N -0.702 5.702 21 C -0.241 4.241 22 H 0.064 0.936 23 C -0.002 4.002 24 N -0.911 5.911 25 Si 0.897 3.103 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.082 3.918 30 H 0.149 0.851 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.036 0.964 44 H 0.022 0.978 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.041 0.959 48 H 0.382 0.618 49 H 0.258 0.742 50 H 0.084 0.916 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.019 -5.596 -1.907 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 C -0.218 4.218 4 C 0.149 3.851 5 O -0.292 6.292 6 N -0.237 5.237 7 C 0.042 3.958 8 C -0.179 4.179 9 C -0.193 4.193 10 C 0.368 3.632 11 O -0.408 6.408 12 N -0.325 5.325 13 C 0.003 3.997 14 C -0.165 4.165 15 C -0.135 4.135 16 C -0.128 4.128 17 C -0.178 4.178 18 C 0.047 3.953 19 H 0.070 0.930 20 N -0.344 5.344 21 C -0.373 4.373 22 H 0.082 0.918 23 C -0.199 4.199 24 N -0.557 5.557 25 Si 0.728 3.272 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.041 4.041 30 H 0.166 0.834 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.159 0.841 34 H 0.258 0.742 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.055 0.945 44 H 0.041 0.959 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.220 0.780 49 H 0.068 0.932 50 H 0.102 0.898 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.377 -5.591 -2.877 11.290 hybrid contribution -1.243 0.997 0.953 1.857 sum 8.134 -4.595 -1.924 9.538 Atomic orbital electron populations 1.21671 0.88207 1.03471 1.08538 1.20313 0.97859 0.90259 0.86915 1.21832 0.93478 0.99654 1.06799 1.19134 0.87010 0.84792 0.94195 1.84678 1.76117 1.34427 1.33988 1.66852 1.41770 0.97725 1.17314 1.20875 0.89329 0.92970 0.92579 1.21147 1.00521 0.92571 1.03636 1.20502 0.94288 0.94466 1.10047 1.17819 0.80903 0.83152 0.81331 1.90760 1.35355 1.77436 1.37240 1.47891 1.53453 1.11537 1.19609 1.21107 0.95767 0.81506 1.01323 1.21781 0.95048 0.99245 1.00401 1.21139 0.98690 0.97966 0.95667 1.20946 0.95410 1.01091 0.95321 1.22362 0.97363 0.98868 0.99214 1.20809 0.91744 0.89239 0.93554 0.92977 1.41993 1.55139 1.24638 1.12592 1.19161 1.03720 1.08079 1.06293 0.91806 1.24879 0.95802 0.99821 0.99403 1.69630 1.07433 1.41484 1.37179 0.86434 0.77145 0.83855 0.79783 1.21275 1.21648 1.21206 1.23323 0.94171 1.00254 0.86324 0.83402 0.91900 0.90189 0.84089 0.74226 0.90339 0.89858 0.89414 0.92209 0.91138 0.92711 0.92362 0.89858 0.94497 0.95921 0.89616 0.93713 0.94017 0.78014 0.93154 0.89786 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.68 36.01 0.31 -3.04 16 2 C 0.05 1.05 5.64 -103.96 -0.59 0.46 16 3 C -0.20 -3.43 9.75 -39.34 -0.38 -3.81 16 4 C 0.33 5.44 7.74 -16.96 -0.13 5.31 16 5 O -0.48 -6.82 13.55 -18.17 -0.25 -7.07 16 6 N -0.52 -8.79 10.29 -9.20 -0.09 -8.88 16 7 C 0.18 2.99 5.51 -82.18 -0.45 2.53 16 8 C -0.12 -1.54 8.82 36.01 0.32 -1.22 16 9 C -0.19 -3.44 4.46 -104.82 -0.47 -3.90 16 10 C 0.58 10.74 3.28 -12.48 -0.04 10.70 16 11 O -0.53 -11.23 15.47 5.29 0.08 -11.15 16 12 N -0.59 -9.34 0.60 -173.35 -0.10 -9.45 16 13 C 0.13 1.77 4.54 -5.20 -0.02 1.75 16 14 C -0.13 -1.94 5.35 -27.60 -0.15 -2.09 16 15 C -0.10 -1.85 4.93 -27.30 -0.13 -1.98 16 16 C -0.09 -1.70 4.83 -27.69 -0.13 -1.84 16 17 C -0.14 -2.28 5.22 -26.94 -0.14 -2.42 16 18 C 0.16 2.84 2.84 -67.66 -0.19 2.65 16 19 H 0.05 0.94 7.99 -51.15 -0.41 0.53 16 20 N -0.70 -15.08 3.33 -52.85 -0.18 -15.26 16 21 C -0.24 -5.84 9.49 -15.06 -0.14 -5.98 16 22 H 0.06 1.55 7.78 -52.48 -0.41 1.14 16 23 C 0.00 -0.05 4.88 -17.43 -0.09 -0.14 16 24 N -0.91 -23.47 11.26 55.49 0.62 -22.84 16 25 Si 0.90 20.32 29.58 -169.99 -5.03 15.30 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 C 0.08 1.21 3.77 -2.27 -0.01 1.20 16 30 H 0.15 3.44 4.17 -51.93 -0.22 3.23 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.76 5.82 -51.93 -0.30 1.46 16 33 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.40 3.70 9.06 45.56 0.41 4.12 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.07 4.26 -51.93 -0.22 0.85 16 38 H 0.06 0.82 8.05 -51.28 -0.41 0.40 16 39 H 0.07 0.79 6.76 -51.32 -0.35 0.44 16 40 H 0.05 0.85 8.23 -51.32 -0.42 0.43 16 41 H 0.06 0.78 8.06 -51.38 -0.41 0.37 16 42 H 0.08 1.85 3.94 -52.52 -0.21 1.64 16 43 H 0.04 0.73 8.29 -50.85 -0.42 0.31 16 44 H 0.02 0.39 8.23 -51.34 -0.42 -0.03 16 45 H 0.09 1.99 7.41 -51.84 -0.38 1.60 16 46 H 0.04 0.64 4.96 -51.90 -0.26 0.38 16 47 H 0.04 0.68 8.19 -51.63 -0.42 0.25 16 48 H 0.38 8.41 1.64 -40.82 -0.07 8.34 16 49 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 50 H 0.08 1.28 4.26 -52.07 -0.22 1.06 16 51 H 0.08 0.91 7.45 -52.14 -0.39 0.52 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -29.07 370.46 -8.16 -37.23 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -6.36 Total: 18.36 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.44 Total: -1.81 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.25 Total: -56.43 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.16 Total: -18.22 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.07 -8.16 -37.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088428805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.807 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds