Wall clock time and date at job start Wed Apr 1 2020 04:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37994 * 120.82503 * 2 1 4 4 C 1.39122 * 119.26703 * 180.02562 * 3 2 1 5 5 O 1.35493 * 119.52521 * 179.97438 * 4 3 2 6 6 N 1.32444 * 120.94947 * 0.02562 * 4 3 2 7 7 C 1.31634 * 121.79662 * 359.70339 * 6 4 3 8 8 C 1.50703 * 119.68762 * 180.28695 * 7 6 4 9 9 C 1.39567 * 120.62767 * 0.58446 * 7 6 4 10 10 C 1.47615 * 120.49942 * 179.70583 * 9 7 6 11 11 O 1.21589 * 119.99694 * 238.31267 * 10 9 7 12 12 N 1.34684 * 120.00202 * 58.30218 * 10 9 7 13 13 C 1.45338 * 121.27674 * 191.93832 * 12 10 9 14 14 C 1.51959 * 115.90534 * 279.09045 * 13 12 10 15 15 C 1.52336 * 113.38486 * 347.67039 * 14 13 12 16 16 C 1.52542 * 111.43747 * 275.07253 * 15 14 13 17 17 C 1.51567 * 112.34384 * 55.76034 * 16 15 14 18 18 C 1.53996 * 111.18397 * 64.93442 * 17 16 15 19 19 H 1.10364 * 107.48195 * 132.25557 * 18 17 16 20 20 N 1.44677 * 113.49364 * 11.91211 * 18 17 16 21 21 C 1.36933 * 119.99970 * 95.33689 * 20 18 17 22 22 H 1.08004 * 120.00489 * 22.17513 * 21 20 18 23 23 C 1.38813 * 120.00295 * 202.17932 * 21 20 18 24 24 N 1.31626 * 119.99451 * 12.78883 * 23 21 20 25 25 Si 1.86798 * 120.00315 * 192.79330 * 23 21 20 26 26 H 1.48501 * 109.47117 * 59.99790 * 25 23 21 27 27 H 1.48504 * 109.47263 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46862 * 299.99471 * 25 23 21 29 29 C 1.48409 * 120.00910 * 7.50137 * 12 10 9 30 30 H 1.09004 * 109.46926 * 277.55821 * 1 2 3 31 31 H 1.09000 * 109.47185 * 37.55348 * 1 2 3 32 32 H 1.09001 * 109.47880 * 157.56167 * 1 2 3 33 33 H 1.07999 * 120.36792 * 0.02562 * 3 2 1 34 34 H 0.96701 * 114.00335 * 90.00416 * 5 4 3 35 35 H 1.09000 * 109.47073 * 278.12950 * 8 7 6 36 36 H 1.08999 * 109.46856 * 38.12912 * 8 7 6 37 37 H 1.09003 * 109.47322 * 158.12596 * 8 7 6 38 38 H 1.10141 * 108.24222 * 41.57310 * 13 12 10 39 39 H 1.10066 * 108.44547 * 156.27329 * 13 12 10 40 40 H 1.10067 * 109.18025 * 109.28092 * 14 13 12 41 41 H 1.09965 * 109.33488 * 225.70287 * 14 13 12 42 42 H 1.07931 * 111.97546 * 41.34992 * 15 14 13 43 43 H 1.10881 * 107.70435 * 157.57859 * 15 14 13 44 44 H 1.10041 * 108.42855 * 295.74059 * 16 15 14 45 45 H 1.09166 * 109.89209 * 178.98397 * 16 15 14 46 46 H 1.09054 * 110.17003 * 303.73110 * 17 16 15 47 47 H 1.09529 * 109.43819 * 184.76425 * 17 16 15 48 48 H 0.96998 * 119.99788 * 275.33495 * 20 18 17 49 49 H 0.97001 * 119.99834 * 174.95785 * 24 23 21 50 50 H 1.08741 * 109.26755 * 337.68630 * 29 12 10 51 51 H 1.08628 * 109.53715 * 216.20165 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3076 -0.0011 6 7 4.2548 -0.0068 -0.0016 7 6 3.6204 -1.1602 0.0037 8 6 4.4079 -2.4451 0.0088 9 6 2.2255 -1.2044 -0.0017 10 6 1.5170 -2.4995 -0.0023 11 8 0.7435 -2.7688 -0.9009 12 7 1.7276 -3.3828 0.9924 13 6 1.2546 -4.7537 0.8967 14 6 -0.2119 -4.9747 1.2277 15 6 -0.8702 -3.7713 1.8903 16 6 -0.6400 -3.7699 3.3983 17 6 0.8317 -3.8249 3.7565 18 6 1.5664 -2.5552 3.2880 19 1 2.1772 -2.1945 4.1335 20 7 0.6756 -1.4943 2.8706 21 6 0.3219 -0.5099 3.7543 22 1 0.9464 -0.3032 4.6109 23 6 -0.8395 0.2223 3.5494 24 7 -1.7256 -0.1833 2.6646 25 14 -1.1447 1.7832 4.5292 26 1 -0.0553 2.7563 4.2620 27 1 -2.4459 2.3744 4.1257 28 1 -1.1755 1.4599 5.9782 29 6 2.5392 -2.9927 2.1720 30 1 -0.3633 0.1352 1.0188 31 1 -0.3633 0.8147 -0.6264 32 1 -0.3635 -0.9498 -0.3922 33 1 1.6937 2.1313 0.0004 34 1 4.5078 2.6446 0.8822 35 1 4.7211 -2.6833 -1.0077 36 1 5.2873 -2.3297 0.6424 37 1 3.7848 -3.2516 0.3954 38 1 1.4454 -5.1137 -0.1266 39 1 1.8688 -5.3811 1.5606 40 1 -0.7588 -5.2164 0.3036 41 1 -0.3082 -5.8474 1.8899 42 1 -0.5646 -2.8419 1.4345 43 1 -1.9634 -3.8502 1.7228 44 1 -1.1387 -4.6521 3.8271 45 1 -1.1059 -2.8892 3.8443 46 1 1.2977 -4.6983 3.2989 47 1 0.9395 -3.9075 4.8433 48 1 0.3289 -1.4804 1.9648 49 1 -2.5694 0.2863 2.5729 50 1 3.1859 -2.1608 1.9034 51 1 3.1256 -3.8435 2.5069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088428805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:27 Heat of formation + Delta-G solvation = -33.681407 kcal Electronic energy + Delta-G solvation = -34794.474389 eV Core-core repulsion = 30694.167074 eV Total energy + Delta-G solvation = -4100.307315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -42.32568 -40.75064 -38.77886 -38.09826 -36.27070 -35.41698 -34.90906 -33.82528 -32.69822 -31.06870 -29.46412 -28.94616 -28.31911 -27.59208 -25.70285 -24.88038 -23.64559 -22.26103 -21.73936 -20.99880 -19.95551 -19.41668 -19.20351 -18.42167 -17.99818 -17.12802 -16.66258 -16.57997 -16.45199 -15.90087 -15.61003 -15.40983 -15.11350 -15.01011 -14.96032 -14.71460 -14.30966 -14.08387 -13.92551 -13.75198 -13.55707 -13.34517 -13.11789 -13.10069 -12.99164 -12.81068 -12.71473 -12.64808 -12.55203 -12.42217 -12.37219 -12.11459 -11.82055 -11.51234 -11.35576 -11.21227 -11.09841 -10.72877 -10.65656 -10.43799 -10.34181 -9.82379 -9.55517 -8.66167 -7.81752 -5.13226 -0.28849 0.16489 1.47387 1.50782 1.54506 1.56957 2.00379 2.46502 2.60051 2.68784 3.40516 3.45017 3.48101 3.60693 3.96558 4.03909 4.08674 4.10046 4.18163 4.23495 4.31738 4.36867 4.40811 4.45741 4.51151 4.60048 4.66416 4.68155 4.76399 4.80317 4.82062 4.86996 4.97062 4.99418 5.05843 5.07300 5.18902 5.24152 5.25333 5.27062 5.40681 5.47799 5.56586 5.61261 5.72863 5.76059 5.86420 5.94248 6.35971 6.47861 6.56630 6.81419 7.15951 7.46116 8.30543 8.57337 9.33128 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008235 B = 0.007472 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.475758 B = 3746.209866 C = 5817.434881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.033 3.967 3 C -0.209 4.209 4 C 0.333 3.667 5 O -0.484 6.484 6 N -0.521 5.521 7 C 0.186 3.814 8 C -0.119 4.119 9 C -0.204 4.204 10 C 0.579 3.421 11 O -0.569 6.569 12 N -0.585 5.585 13 C 0.115 3.885 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.082 4.082 17 C -0.130 4.130 18 C 0.142 3.858 19 H 0.052 0.948 20 N -0.710 5.710 21 C -0.234 4.234 22 H 0.061 0.939 23 C -0.046 4.046 24 N -0.931 5.931 25 Si 0.943 3.057 26 H -0.283 1.283 27 H -0.302 1.302 28 H -0.287 1.287 29 C 0.088 3.912 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.150 0.850 34 H 0.422 0.578 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.008 0.992 44 H 0.038 0.962 45 H 0.033 0.967 46 H 0.083 0.917 47 H 0.047 0.953 48 H 0.381 0.619 49 H 0.247 0.753 50 H 0.080 0.920 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.404 -7.605 -1.228 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 C -0.230 4.230 4 C 0.155 3.845 5 O -0.295 6.295 6 N -0.242 5.242 7 C 0.047 3.953 8 C -0.176 4.176 9 C -0.210 4.210 10 C 0.367 3.633 11 O -0.449 6.449 12 N -0.316 5.316 13 C -0.008 4.008 14 C -0.160 4.160 15 C -0.129 4.129 16 C -0.120 4.120 17 C -0.170 4.170 18 C 0.031 3.969 19 H 0.070 0.930 20 N -0.352 5.352 21 C -0.367 4.367 22 H 0.079 0.921 23 C -0.240 4.240 24 N -0.579 5.579 25 Si 0.774 3.226 26 H -0.209 1.209 27 H -0.229 1.229 28 H -0.213 1.213 29 C -0.034 4.034 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.284 0.716 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.136 0.864 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.027 0.973 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.218 0.782 49 H 0.056 0.944 50 H 0.098 0.902 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.813 -7.615 -2.146 15.059 hybrid contribution -2.265 1.648 0.766 2.904 sum 10.548 -5.967 -1.380 12.197 Atomic orbital electron populations 1.21423 0.89987 1.02480 1.07002 1.20291 0.96926 0.91700 0.88521 1.21945 0.94196 0.99488 1.07358 1.19208 0.86817 0.85556 0.92939 1.84628 1.75531 1.33414 1.35911 1.67016 1.41594 0.97923 1.17649 1.21460 0.88848 0.94280 0.90738 1.21269 1.00852 0.90503 1.04991 1.20637 0.95320 0.94078 1.10939 1.17921 0.80414 0.83448 0.81497 1.90733 1.36956 1.78152 1.39035 1.47918 1.52893 1.11830 1.18910 1.21369 0.95213 0.80934 1.03245 1.21741 0.95888 0.98119 1.00252 1.21059 0.97283 0.98434 0.96101 1.20813 0.97209 0.99250 0.94729 1.22281 0.95345 0.99494 0.99903 1.21100 0.91778 0.88956 0.95075 0.92974 1.42076 1.55570 1.25366 1.12167 1.19343 1.02974 1.08389 1.05975 0.92102 1.25325 0.96218 1.01805 1.00649 1.69779 1.07343 1.42155 1.38649 0.85701 0.76320 0.81906 0.78671 1.20918 1.22925 1.21320 1.23428 0.93206 1.02238 0.84550 0.85836 0.91048 0.92457 0.83264 0.71637 0.89095 0.87646 0.88633 0.91473 0.86446 0.93552 0.89384 0.93049 0.97342 0.94327 0.94842 0.89905 0.93460 0.78248 0.94384 0.90192 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.65 8.68 71.24 0.62 -6.03 16 2 C 0.03 1.31 5.64 -19.43 -0.11 1.20 16 3 C -0.21 -7.29 9.75 22.42 0.22 -7.07 16 4 C 0.33 10.65 7.74 84.81 0.66 11.30 16 5 O -0.48 -12.66 13.55 -87.94 -1.19 -13.85 16 6 N -0.52 -16.62 10.29 -295.88 -3.04 -19.66 16 7 C 0.19 5.72 5.51 42.91 0.24 5.95 16 8 C -0.12 -2.56 8.82 71.24 0.63 -1.93 16 9 C -0.20 -7.38 4.46 -19.99 -0.09 -7.47 16 10 C 0.58 21.06 3.28 86.73 0.28 21.34 16 11 O -0.57 -24.50 15.47 -4.00 -0.06 -24.56 16 12 N -0.58 -16.88 0.60 -820.67 -0.49 -17.37 16 13 C 0.11 2.76 4.54 86.25 0.39 3.15 16 14 C -0.12 -3.46 5.35 30.03 0.16 -3.30 16 15 C -0.09 -3.49 4.93 30.22 0.15 -3.35 16 16 C -0.08 -3.06 4.83 29.97 0.14 -2.92 16 17 C -0.13 -3.91 5.22 30.46 0.16 -3.75 16 18 C 0.14 4.77 2.84 46.14 0.13 4.90 16 19 H 0.05 1.75 7.99 -1.66 -0.01 1.74 16 20 N -0.71 -30.73 3.33 -321.11 -1.07 -31.79 16 21 C -0.23 -11.57 9.49 84.03 0.80 -10.77 16 22 H 0.06 2.98 7.78 -2.91 -0.02 2.95 16 23 C -0.05 -2.35 4.88 84.86 0.41 -1.94 16 24 N -0.93 -50.70 11.26 21.65 0.24 -50.46 16 25 Si 0.94 43.07 29.58 68.60 2.03 45.10 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 29 C 0.09 2.24 3.77 86.48 0.33 2.57 16 30 H 0.12 6.11 4.17 -2.39 -0.01 6.10 16 31 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.06 2.71 5.82 -2.39 -0.01 2.69 16 33 H 0.15 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.42 6.83 9.06 -74.06 -0.67 6.16 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 1.89 4.26 -2.39 -0.01 1.88 16 38 H 0.07 1.59 8.05 -1.78 -0.01 1.57 16 39 H 0.12 1.79 6.76 -1.82 -0.01 1.78 16 40 H 0.05 1.39 8.23 -1.82 -0.01 1.37 16 41 H 0.09 2.00 8.06 -1.87 -0.02 1.98 16 42 H 0.05 2.35 3.94 -2.95 -0.01 2.34 16 43 H 0.01 0.33 8.29 -1.37 -0.01 0.32 16 44 H 0.04 1.28 8.23 -1.83 -0.02 1.27 16 45 H 0.03 1.59 7.41 -2.30 -0.02 1.57 16 46 H 0.08 1.87 4.96 -2.36 -0.01 1.86 16 47 H 0.05 1.38 8.19 -2.11 -0.02 1.36 16 48 H 0.38 17.14 1.64 -92.71 -0.15 16.99 16 49 H 0.25 13.56 8.32 -92.71 -0.77 12.79 16 50 H 0.08 2.16 4.26 -2.52 -0.01 2.15 16 51 H 0.13 2.06 7.45 -2.58 -0.02 2.04 16 Total: -1.00 -68.14 370.46 1.74 -66.40 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: 0.20 Total: 44.30 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 5.12 Total: 1.90 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -4.36 Total: -119.28 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.25 Total: -38.42 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -68.14 1.74 -66.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088428805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.722 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds