Wall clock time and date at job start Wed Apr 1 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38000 * 120.82217 * 2 1 4 4 C 1.39119 * 119.26298 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52429 * 179.97438 * 4 3 2 6 6 N 1.32442 * 120.95052 * 359.97438 * 4 3 2 7 7 C 1.31634 * 121.80019 * 359.69853 * 6 4 3 8 8 C 1.39560 * 120.62293 * 0.58853 * 7 6 4 9 9 C 1.47621 * 120.49723 * 179.69984 * 8 7 6 10 10 O 1.21581 * 119.99756 * 174.34215 * 9 8 7 11 11 N 1.34778 * 120.00005 * 354.34074 * 9 8 7 12 12 C 1.46495 * 120.00128 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47501 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.58708 * 301.02975 * 13 12 11 15 15 C 1.53195 * 109.70884 * 180.66778 * 13 12 11 16 16 C 1.53038 * 109.31416 * 185.50884 * 15 13 12 17 17 C 1.53037 * 109.53775 * 61.36656 * 16 15 13 18 18 C 1.52998 * 109.50032 * 58.58643 * 17 16 15 19 19 C 1.53001 * 109.49654 * 178.68563 * 17 16 15 20 20 C 1.53628 * 109.24130 * 298.50503 * 17 16 15 21 21 N 1.46927 * 108.54031 * 54.86247 * 20 17 16 22 22 C 1.36935 * 120.63324 * 126.36176 * 21 20 17 23 23 H 1.08002 * 120.00138 * 206.29823 * 22 21 20 24 24 C 1.38817 * 119.99684 * 26.30687 * 22 21 20 25 25 N 1.31621 * 119.99724 * 199.46512 * 24 22 21 26 26 Si 1.86798 * 120.00123 * 19.46027 * 24 22 21 27 27 H 1.48504 * 109.46976 * 266.66736 * 26 24 22 28 28 H 1.48493 * 109.47151 * 26.66455 * 26 24 22 29 29 H 1.48501 * 109.47100 * 146.66762 * 26 24 22 30 30 H 1.09002 * 109.47055 * 264.05176 * 1 2 3 31 31 H 1.09006 * 109.46927 * 24.05355 * 1 2 3 32 32 H 1.08995 * 109.47181 * 144.05314 * 1 2 3 33 33 H 1.07993 * 120.36421 * 0.04009 * 3 2 1 34 34 H 0.96692 * 114.00584 * 89.99834 * 5 4 3 35 35 H 1.08005 * 119.68624 * 180.29344 * 7 6 4 36 36 H 0.96998 * 119.99957 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47254 * 59.99747 * 12 11 9 38 38 H 1.09006 * 109.47009 * 300.00377 * 12 11 9 39 39 H 1.08999 * 109.49226 * 305.46213 * 15 13 12 40 40 H 1.08996 * 109.49252 * 65.55203 * 15 13 12 41 41 H 1.08997 * 109.46116 * 181.38957 * 16 15 13 42 42 H 1.09004 * 109.45984 * 301.34265 * 16 15 13 43 43 H 1.09003 * 109.47116 * 59.99749 * 18 17 16 44 44 H 1.09004 * 109.46864 * 180.02562 * 18 17 16 45 45 H 1.09000 * 109.46773 * 299.99509 * 18 17 16 46 46 H 1.09000 * 109.47695 * 59.99773 * 19 17 16 47 47 H 1.09003 * 109.47059 * 180.02562 * 19 17 16 48 48 H 1.08999 * 109.47031 * 299.99872 * 19 17 16 49 49 H 1.08990 * 109.74533 * 295.12374 * 20 17 16 50 50 H 1.08999 * 109.66468 * 174.54735 * 20 17 16 51 51 H 0.96999 * 120.00298 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3077 -0.0011 6 7 4.2548 -0.0067 -0.0005 7 6 3.6204 -1.1601 0.0058 8 6 2.2256 -1.2044 0.0006 9 6 1.5171 -2.4995 0.0011 10 8 0.3057 -2.5296 0.1003 11 7 2.2131 -3.6484 -0.1084 12 6 1.5100 -4.9336 -0.1085 13 6 2.5251 -6.0703 -0.2432 14 1 3.0892 -5.9489 -1.1680 15 6 1.7940 -7.4165 -0.2606 16 6 2.8215 -8.5506 -0.2568 17 6 3.6631 -8.4745 1.0191 18 6 2.7481 -8.5741 2.2412 19 6 4.6681 -9.6280 1.0374 20 6 4.4193 -7.1375 1.0478 21 7 3.4457 -6.0469 0.9018 22 6 3.4007 -5.0251 1.8123 23 1 2.4801 -4.4831 1.9707 24 6 4.5386 -4.6859 2.5315 25 7 4.4304 -3.9972 3.6479 26 14 6.2231 -5.2069 1.9150 27 1 6.6011 -6.4996 2.5405 28 1 6.1832 -5.3643 0.4390 29 1 7.2243 -4.1711 2.2755 30 1 -0.3633 -0.1065 1.0222 31 1 -0.3633 0.9385 -0.4189 32 1 -0.3633 -0.8319 -0.6032 33 1 1.6936 2.1313 0.0007 34 1 4.5078 2.6448 0.8821 35 1 4.1849 -2.0810 0.0104 36 1 3.1796 -3.6243 -0.1872 37 1 0.8135 -4.9667 -0.9463 38 1 0.9600 -5.0469 0.8258 39 1 1.1597 -7.4973 0.6222 40 1 1.1796 -7.4851 -1.1582 41 1 2.3043 -9.5093 -0.2941 42 1 3.4713 -8.4548 -1.1268 43 1 2.2108 -9.5222 2.2166 44 1 3.3480 -8.5194 3.1497 45 1 2.0335 -7.7511 2.2280 46 1 5.3206 -9.5555 0.1673 47 1 5.2670 -9.5737 1.9466 48 1 4.1325 -10.5770 1.0118 49 1 5.1345 -7.1013 0.2262 50 1 4.9446 -7.0336 1.9972 51 1 3.5557 -3.7263 3.9679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089692683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:05 Heat of formation + Delta-G solvation = -19.923183 kcal Electronic energy + Delta-G solvation = -32497.196858 eV Core-core repulsion = 28397.486144 eV Total energy + Delta-G solvation = -4099.710714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.71179 -39.37107 -38.60577 -36.94083 -35.39192 -33.79396 -33.23538 -32.44330 -30.71339 -30.47234 -28.14526 -27.27529 -26.80236 -25.31001 -24.39901 -23.38303 -22.54085 -22.00860 -20.32421 -19.87363 -18.55362 -18.39839 -17.64218 -17.03437 -16.73602 -15.84433 -15.52542 -15.16885 -14.99490 -14.69026 -14.43402 -14.33825 -13.82079 -13.65688 -13.47939 -13.27986 -13.08366 -12.85271 -12.81674 -12.55883 -12.40712 -12.21616 -12.15872 -12.10858 -11.70144 -11.62494 -11.57865 -11.49147 -11.04414 -10.91501 -10.63399 -10.47818 -10.21057 -9.95556 -9.75506 -9.71258 -9.51619 -9.43245 -9.15187 -9.06273 -8.91863 -8.62267 -8.34806 -7.06255 -6.32798 -3.36245 0.68380 1.23536 3.04977 3.35016 3.45931 3.54713 3.62050 3.66924 3.97457 4.51893 4.60464 4.75969 4.77628 4.91620 5.11918 5.14862 5.21924 5.25895 5.28527 5.42464 5.52109 5.56529 5.63148 5.69651 5.79628 5.81127 5.85801 5.89538 5.97633 6.00384 6.06475 6.09695 6.15207 6.24425 6.26223 6.30741 6.33499 6.42728 6.43705 6.47564 6.52179 6.61826 6.69612 6.79718 6.83401 7.00306 7.06886 7.40557 7.90638 7.95909 8.05033 8.36058 8.66123 8.99679 9.53764 10.13118 11.08389 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.003776 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.533904 B = 7413.002971 C = 8683.609346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.029 3.971 3 C -0.204 4.204 4 C 0.329 3.671 5 O -0.484 6.484 6 N -0.509 5.509 7 C 0.177 3.823 8 C -0.195 4.195 9 C 0.560 3.440 10 O -0.552 6.552 11 N -0.686 5.686 12 C 0.138 3.862 13 C 0.162 3.838 14 H 0.035 0.965 15 C -0.131 4.131 16 C -0.096 4.096 17 C -0.085 4.085 18 C -0.126 4.126 19 C -0.140 4.140 20 C 0.137 3.863 21 N -0.600 5.600 22 C -0.347 4.347 23 H 0.080 0.920 24 C -0.010 4.010 25 N -0.914 5.914 26 Si 1.052 2.948 27 H -0.296 1.296 28 H -0.283 1.283 29 H -0.302 1.302 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.143 0.857 34 H 0.403 0.597 35 H 0.168 0.832 36 H 0.410 0.590 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.027 0.973 50 H 0.072 0.928 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 1.213 -8.121 9.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.021 3.979 3 C -0.225 4.225 4 C 0.151 3.849 5 O -0.292 6.292 6 N -0.227 5.227 7 C 0.018 3.982 8 C -0.200 4.200 9 C 0.346 3.654 10 O -0.433 6.433 11 N -0.336 5.336 12 C 0.014 3.986 13 C 0.055 3.945 14 H 0.052 0.948 15 C -0.170 4.170 16 C -0.134 4.134 17 C -0.087 4.087 18 C -0.184 4.184 19 C -0.198 4.198 20 C 0.011 3.989 21 N -0.324 5.324 22 C -0.475 4.475 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.553 5.553 26 Si 0.885 3.115 27 H -0.225 1.225 28 H -0.209 1.209 29 H -0.230 1.230 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.161 0.839 34 H 0.261 0.739 35 H 0.185 0.815 36 H 0.248 0.752 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.045 0.955 50 H 0.090 0.910 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.438 1.309 -8.312 8.760 hybrid contribution -1.675 -0.096 0.363 1.717 sum -4.113 1.213 -7.949 9.032 Atomic orbital electron populations 1.21088 0.88935 1.03361 1.04228 1.20330 0.97512 0.90676 0.89408 1.21904 0.93696 0.99331 1.07552 1.19370 0.87064 0.85270 0.93187 1.84675 1.76090 1.34276 1.34144 1.67193 1.42044 0.98192 1.15319 1.22877 0.90544 0.95272 0.89504 1.20947 0.95068 0.94785 1.09176 1.17788 0.86799 0.83515 0.77275 1.90668 1.13566 1.87335 1.51771 1.45877 1.11472 1.04933 1.71349 1.21278 0.94283 0.81780 1.01279 1.20730 0.90718 0.91934 0.91133 0.94757 1.21996 0.98037 0.95761 1.01226 1.21412 0.97264 0.97482 0.97208 1.21125 0.95936 0.96298 0.95353 1.21708 0.99520 1.00409 0.96724 1.21835 0.98889 0.97668 1.01379 1.21547 0.91513 0.86181 0.99625 1.44396 1.39203 1.23240 1.25607 1.20365 0.97537 1.12158 1.17463 0.90291 1.26033 1.01698 0.97857 0.95677 1.70880 1.26990 1.39375 1.18067 0.83972 0.76901 0.74830 0.75801 1.22496 1.20911 1.23039 0.90000 0.92142 0.87955 0.83938 0.73902 0.81469 0.75248 0.92328 0.91245 0.91347 0.92765 0.93065 0.92740 0.94547 0.93424 0.91262 0.93151 0.92873 0.93285 0.95531 0.90971 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.86 36.01 0.32 -1.26 16 2 C 0.03 0.43 5.95 -103.96 -0.62 -0.19 16 3 C -0.20 -2.70 9.70 -39.34 -0.38 -3.08 16 4 C 0.33 4.87 7.74 -16.96 -0.13 4.74 16 5 O -0.48 -5.97 13.55 -18.19 -0.25 -6.22 16 6 N -0.51 -8.77 10.37 -12.97 -0.13 -8.91 16 7 C 0.18 3.04 10.69 -17.14 -0.18 2.86 16 8 C -0.19 -3.29 5.89 -104.82 -0.62 -3.91 16 9 C 0.56 10.26 7.72 -12.43 -0.10 10.16 16 10 O -0.55 -10.90 13.47 5.29 0.07 -10.83 16 11 N -0.69 -12.32 3.76 -61.32 -0.23 -12.55 16 12 C 0.14 2.39 4.42 -4.05 -0.02 2.38 16 13 C 0.16 2.77 2.99 -67.60 -0.20 2.57 16 14 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 15 C -0.13 -1.95 5.04 -26.61 -0.13 -2.08 16 16 C -0.10 -1.38 4.71 -26.69 -0.13 -1.51 16 17 C -0.09 -1.38 0.77 -154.16 -0.12 -1.50 16 18 C -0.13 -2.13 7.99 37.16 0.30 -1.83 16 19 C -0.14 -1.97 8.48 37.16 0.32 -1.65 16 20 C 0.14 2.68 2.90 -3.48 -0.01 2.67 16 21 N -0.60 -12.21 2.21 -164.51 -0.36 -12.57 16 22 C -0.35 -8.27 7.55 -15.06 -0.11 -8.39 16 23 H 0.08 2.06 5.82 -52.49 -0.31 1.76 16 24 C -0.01 -0.27 5.27 -17.43 -0.09 -0.36 16 25 N -0.91 -26.34 13.71 55.49 0.76 -25.58 16 26 Si 1.05 24.50 24.67 -169.99 -4.19 20.31 16 27 H -0.30 -6.74 6.63 56.52 0.37 -6.36 16 28 H -0.28 -6.11 6.45 56.52 0.36 -5.75 16 29 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.10 1.52 5.91 -51.93 -0.31 1.21 16 33 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.40 2.98 9.06 45.56 0.41 3.39 16 35 H 0.17 2.86 6.45 -52.48 -0.34 2.52 16 36 H 0.41 7.44 5.58 -40.82 -0.23 7.21 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.38 7.38 -51.93 -0.38 0.99 16 39 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.03 0.52 6.99 -51.93 -0.36 0.16 16 50 H 0.07 1.60 4.28 -51.93 -0.22 1.37 16 51 H 0.26 7.69 8.73 -40.82 -0.36 7.34 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -30.08 386.77 -7.50 -37.58 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -7.08 Total: 13.32 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.91 Total: -0.38 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.03 Total: -59.61 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.18 Total: -17.05 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.19 Total: 20.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.08 -7.50 -37.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089692683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.658 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds