Wall clock time and date at job start Wed Apr 1 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38000 * 120.82217 * 2 1 4 4 C 1.39119 * 119.26298 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52429 * 179.97438 * 4 3 2 6 6 N 1.32442 * 120.95052 * 359.97438 * 4 3 2 7 7 C 1.31634 * 121.80019 * 359.69853 * 6 4 3 8 8 C 1.39560 * 120.62293 * 0.58853 * 7 6 4 9 9 C 1.47621 * 120.49723 * 179.69984 * 8 7 6 10 10 O 1.21581 * 119.99756 * 174.34215 * 9 8 7 11 11 N 1.34778 * 120.00005 * 354.34074 * 9 8 7 12 12 C 1.46495 * 120.00128 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47501 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.58708 * 301.02975 * 13 12 11 15 15 C 1.53195 * 109.70884 * 180.66778 * 13 12 11 16 16 C 1.53038 * 109.31416 * 185.50884 * 15 13 12 17 17 C 1.53037 * 109.53775 * 61.36656 * 16 15 13 18 18 C 1.52998 * 109.50032 * 58.58643 * 17 16 15 19 19 C 1.53001 * 109.49654 * 178.68563 * 17 16 15 20 20 C 1.53628 * 109.24130 * 298.50503 * 17 16 15 21 21 N 1.46927 * 108.54031 * 54.86247 * 20 17 16 22 22 C 1.36935 * 120.63324 * 126.36176 * 21 20 17 23 23 H 1.08002 * 120.00138 * 206.29823 * 22 21 20 24 24 C 1.38817 * 119.99684 * 26.30687 * 22 21 20 25 25 N 1.31621 * 119.99724 * 199.46512 * 24 22 21 26 26 Si 1.86798 * 120.00123 * 19.46027 * 24 22 21 27 27 H 1.48504 * 109.46976 * 266.66736 * 26 24 22 28 28 H 1.48493 * 109.47151 * 26.66455 * 26 24 22 29 29 H 1.48501 * 109.47100 * 146.66762 * 26 24 22 30 30 H 1.09002 * 109.47055 * 264.05176 * 1 2 3 31 31 H 1.09006 * 109.46927 * 24.05355 * 1 2 3 32 32 H 1.08995 * 109.47181 * 144.05314 * 1 2 3 33 33 H 1.07993 * 120.36421 * 0.04009 * 3 2 1 34 34 H 0.96692 * 114.00584 * 89.99834 * 5 4 3 35 35 H 1.08005 * 119.68624 * 180.29344 * 7 6 4 36 36 H 0.96998 * 119.99957 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47254 * 59.99747 * 12 11 9 38 38 H 1.09006 * 109.47009 * 300.00377 * 12 11 9 39 39 H 1.08999 * 109.49226 * 305.46213 * 15 13 12 40 40 H 1.08996 * 109.49252 * 65.55203 * 15 13 12 41 41 H 1.08997 * 109.46116 * 181.38957 * 16 15 13 42 42 H 1.09004 * 109.45984 * 301.34265 * 16 15 13 43 43 H 1.09003 * 109.47116 * 59.99749 * 18 17 16 44 44 H 1.09004 * 109.46864 * 180.02562 * 18 17 16 45 45 H 1.09000 * 109.46773 * 299.99509 * 18 17 16 46 46 H 1.09000 * 109.47695 * 59.99773 * 19 17 16 47 47 H 1.09003 * 109.47059 * 180.02562 * 19 17 16 48 48 H 1.08999 * 109.47031 * 299.99872 * 19 17 16 49 49 H 1.08990 * 109.74533 * 295.12374 * 20 17 16 50 50 H 1.08999 * 109.66468 * 174.54735 * 20 17 16 51 51 H 0.96999 * 120.00298 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3077 -0.0011 6 7 4.2548 -0.0067 -0.0005 7 6 3.6204 -1.1601 0.0058 8 6 2.2256 -1.2044 0.0006 9 6 1.5171 -2.4995 0.0011 10 8 0.3057 -2.5296 0.1003 11 7 2.2131 -3.6484 -0.1084 12 6 1.5100 -4.9336 -0.1085 13 6 2.5251 -6.0703 -0.2432 14 1 3.0892 -5.9489 -1.1680 15 6 1.7940 -7.4165 -0.2606 16 6 2.8215 -8.5506 -0.2568 17 6 3.6631 -8.4745 1.0191 18 6 2.7481 -8.5741 2.2412 19 6 4.6681 -9.6280 1.0374 20 6 4.4193 -7.1375 1.0478 21 7 3.4457 -6.0469 0.9018 22 6 3.4007 -5.0251 1.8123 23 1 2.4801 -4.4831 1.9707 24 6 4.5386 -4.6859 2.5315 25 7 4.4304 -3.9972 3.6479 26 14 6.2231 -5.2069 1.9150 27 1 6.6011 -6.4996 2.5405 28 1 6.1832 -5.3643 0.4390 29 1 7.2243 -4.1711 2.2755 30 1 -0.3633 -0.1065 1.0222 31 1 -0.3633 0.9385 -0.4189 32 1 -0.3633 -0.8319 -0.6032 33 1 1.6936 2.1313 0.0007 34 1 4.5078 2.6448 0.8821 35 1 4.1849 -2.0810 0.0104 36 1 3.1796 -3.6243 -0.1872 37 1 0.8135 -4.9667 -0.9463 38 1 0.9600 -5.0469 0.8258 39 1 1.1597 -7.4973 0.6222 40 1 1.1796 -7.4851 -1.1582 41 1 2.3043 -9.5093 -0.2941 42 1 3.4713 -8.4548 -1.1268 43 1 2.2108 -9.5222 2.2166 44 1 3.3480 -8.5194 3.1497 45 1 2.0335 -7.7511 2.2280 46 1 5.3206 -9.5555 0.1673 47 1 5.2670 -9.5737 1.9466 48 1 4.1325 -10.5770 1.0118 49 1 5.1345 -7.1013 0.2262 50 1 4.9446 -7.0336 1.9972 51 1 3.5557 -3.7263 3.9679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089692683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:04 Heat of formation + Delta-G solvation = -42.389887 kcal Electronic energy + Delta-G solvation = -32498.171087 eV Core-core repulsion = 28397.486144 eV Total energy + Delta-G solvation = -4100.684943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.96457 -40.76437 -39.97041 -38.04733 -36.82288 -35.22704 -34.74865 -33.89029 -32.43060 -31.69692 -29.32332 -28.51745 -28.10126 -26.99816 -25.71248 -24.79282 -24.01669 -23.18469 -21.75315 -21.36763 -20.09423 -19.47910 -19.13011 -18.43340 -18.15311 -17.15781 -16.86966 -16.59030 -16.57416 -15.93911 -15.85133 -15.72923 -15.16967 -15.13936 -14.93520 -14.53699 -14.49618 -14.09454 -14.03510 -13.95179 -13.79170 -13.57493 -13.50904 -13.30144 -13.15357 -12.91471 -12.82058 -12.70657 -12.43148 -12.32656 -12.11292 -12.02782 -11.62376 -11.38585 -11.29588 -11.08227 -10.96240 -10.86883 -10.71104 -10.48796 -10.42970 -10.17882 -9.82613 -8.89409 -8.36004 -5.34543 -0.53847 0.04813 1.45181 1.55587 1.71881 1.73249 2.22846 2.44961 2.60886 2.72302 3.16025 3.40239 3.43288 3.58591 3.68521 3.87890 3.91777 3.93812 4.05870 4.18078 4.23437 4.33920 4.41676 4.43675 4.54791 4.58349 4.66575 4.68850 4.71861 4.75589 4.83414 4.85987 4.93683 4.97618 5.00688 5.02462 5.09470 5.10549 5.18303 5.26548 5.28540 5.39621 5.43994 5.47134 5.53960 5.60062 5.73651 6.00835 6.34144 6.49032 6.57748 6.73899 7.02725 7.20013 7.69584 8.21309 9.02228 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.003776 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.533904 B = 7413.002971 C = 8683.609346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.024 3.976 3 C -0.187 4.187 4 C 0.329 3.671 5 O -0.484 6.484 6 N -0.537 5.537 7 C 0.167 3.833 8 C -0.213 4.213 9 C 0.557 3.443 10 O -0.571 6.571 11 N -0.689 5.689 12 C 0.142 3.858 13 C 0.160 3.840 14 H 0.051 0.949 15 C -0.125 4.125 16 C -0.091 4.091 17 C -0.084 4.084 18 C -0.121 4.121 19 C -0.136 4.136 20 C 0.130 3.870 21 N -0.611 5.611 22 C -0.297 4.297 23 H 0.051 0.949 24 C -0.064 4.064 25 N -0.961 5.961 26 Si 1.087 2.913 27 H -0.290 1.290 28 H -0.254 1.254 29 H -0.323 1.323 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.182 0.818 34 H 0.425 0.575 35 H 0.157 0.843 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.071 0.929 49 H 0.037 0.963 50 H 0.043 0.957 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 0.449 -10.754 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.016 3.984 3 C -0.208 4.208 4 C 0.151 3.849 5 O -0.295 6.295 6 N -0.257 5.257 7 C 0.009 3.991 8 C -0.219 4.219 9 C 0.344 3.656 10 O -0.453 6.453 11 N -0.338 5.338 12 C 0.018 3.982 13 C 0.055 3.945 14 H 0.069 0.931 15 C -0.165 4.165 16 C -0.128 4.128 17 C -0.086 4.086 18 C -0.178 4.178 19 C -0.194 4.194 20 C 0.006 3.994 21 N -0.336 5.336 22 C -0.427 4.427 23 H 0.069 0.931 24 C -0.259 4.259 25 N -0.604 5.604 26 Si 0.917 3.083 27 H -0.218 1.218 28 H -0.178 1.178 29 H -0.254 1.254 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.200 0.800 34 H 0.287 0.713 35 H 0.174 0.826 36 H 0.245 0.755 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.090 0.910 49 H 0.054 0.946 50 H 0.061 0.939 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.975 0.506 -10.985 11.392 hybrid contribution -1.604 0.210 1.148 1.984 sum -4.580 0.716 -9.837 10.874 Atomic orbital electron populations 1.21050 0.87634 1.04555 1.03758 1.20636 0.98490 0.90465 0.88786 1.22203 0.92998 1.00202 1.05390 1.19625 0.87926 0.85187 0.92122 1.84633 1.75840 1.32955 1.36107 1.67159 1.43012 0.98945 1.16556 1.22706 0.90698 0.95284 0.90449 1.20916 0.95044 0.94947 1.10971 1.18069 0.86695 0.84138 0.76667 1.90651 1.14251 1.87728 1.52706 1.45911 1.11341 1.05270 1.71320 1.21277 0.94571 0.81888 1.00456 1.20944 0.90171 0.93287 0.90119 0.93113 1.21949 0.98163 0.94283 1.02081 1.21407 0.96970 0.98267 0.96199 1.21092 0.96284 0.95053 0.96123 1.21648 0.98992 1.00764 0.96420 1.21802 0.98522 0.97545 1.01533 1.21605 0.91703 0.87765 0.98368 1.44483 1.40005 1.22835 1.26281 1.20091 0.95600 1.11097 1.15946 0.93115 1.26832 1.04543 0.98652 0.95862 1.71002 1.25501 1.43341 1.20599 0.83530 0.73667 0.74029 0.77100 1.21845 1.17842 1.25357 0.90528 0.88491 0.89809 0.80045 0.71313 0.82570 0.75517 0.90207 0.94406 0.92756 0.89738 0.90497 0.91417 0.91819 0.95539 0.93907 0.91816 0.93927 0.90964 0.94561 0.93878 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.85 8.86 71.24 0.63 -2.22 16 2 C 0.02 0.71 5.95 -19.43 -0.12 0.59 16 3 C -0.19 -4.54 9.70 22.43 0.22 -4.33 16 4 C 0.33 9.30 7.74 84.81 0.66 9.96 16 5 O -0.48 -10.91 13.55 -88.02 -1.19 -12.10 16 6 N -0.54 -18.66 10.37 -307.80 -3.19 -21.86 16 7 C 0.17 5.96 10.69 85.04 0.91 6.87 16 8 C -0.21 -7.39 5.89 -19.99 -0.12 -7.50 16 9 C 0.56 21.09 7.72 86.72 0.67 21.76 16 10 O -0.57 -23.14 13.47 -3.97 -0.05 -23.20 16 11 N -0.69 -25.46 3.76 -466.20 -1.75 -27.22 16 12 C 0.14 4.95 4.42 86.38 0.38 5.33 16 13 C 0.16 5.27 2.99 44.97 0.13 5.40 16 14 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 15 C -0.13 -3.38 5.04 30.67 0.15 -3.22 16 16 C -0.09 -2.24 4.71 30.62 0.14 -2.09 16 17 C -0.08 -2.52 0.77 -51.96 -0.04 -2.56 16 18 C -0.12 -3.96 7.99 71.98 0.58 -3.38 16 19 C -0.14 -3.38 8.48 71.98 0.61 -2.77 16 20 C 0.13 4.95 2.90 86.51 0.25 5.20 16 21 N -0.61 -24.75 2.21 -674.37 -1.49 -26.24 16 22 C -0.30 -14.73 7.55 84.04 0.63 -14.09 16 23 H 0.05 2.81 5.82 -2.91 -0.02 2.80 16 24 C -0.06 -3.48 5.27 84.86 0.45 -3.04 16 25 N -0.96 -58.72 13.71 21.65 0.30 -58.43 16 26 Si 1.09 50.95 24.67 68.60 1.69 52.65 16 27 H -0.29 -13.16 6.63 99.48 0.66 -12.50 16 28 H -0.25 -10.51 6.45 99.48 0.64 -9.87 16 29 H -0.32 -16.22 7.11 99.48 0.71 -15.51 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 1.68 8.07 -2.38 -0.02 1.67 16 32 H 0.08 2.45 5.91 -2.39 -0.01 2.44 16 33 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 34 H 0.42 5.32 9.06 -74.06 -0.67 4.65 16 35 H 0.16 5.71 6.45 -2.91 -0.02 5.69 16 36 H 0.41 15.30 5.58 -92.71 -0.52 14.78 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.04 1.56 7.38 -2.38 -0.02 1.54 16 39 H 0.05 1.64 6.34 -2.39 -0.02 1.62 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.04 1.61 5.97 -2.39 -0.01 1.59 16 46 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.04 1.32 6.99 -2.39 -0.02 1.30 16 50 H 0.04 1.91 4.28 -2.39 -0.01 1.90 16 51 H 0.24 15.29 8.73 -92.71 -0.81 14.48 16 Total: -1.00 -69.64 386.77 0.08 -69.56 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.37 Total: 36.91 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.14 Total: 9.92 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -6.14 Total: -133.74 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.25 Total: -35.30 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 1.69 Total: 52.65 kcal Total: -69.64 0.08 -69.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089692683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.175 kcal (2) G-P(sol) polarization free energy of solvation -69.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds