Wall clock time and date at job start Wed Apr 1 2020 04:46:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38000 * 120.82217 * 2 1
4 4 C 1.39119 * 119.26298 * 180.02562 * 3 2 1
5 5 O 1.35501 * 119.52429 * 179.97438 * 4 3 2
6 6 N 1.32442 * 120.95052 * 359.97438 * 4 3 2
7 7 C 1.31634 * 121.80019 * 359.69853 * 6 4 3
8 8 C 1.39560 * 120.62293 * 0.58853 * 7 6 4
9 9 C 1.47621 * 120.49723 * 179.69984 * 8 7 6
10 10 O 1.21581 * 119.99756 * 174.34215 * 9 8 7
11 11 N 1.34778 * 120.00005 * 354.34074 * 9 8 7
12 12 C 1.46495 * 120.00128 * 180.02562 * 11 9 8
13 13 C 1.52994 * 109.47501 * 180.02562 * 12 11 9
14 14 H 1.09006 * 109.58708 * 301.02975 * 13 12 11
15 15 C 1.53195 * 109.70884 * 180.66778 * 13 12 11
16 16 C 1.53038 * 109.31416 * 185.50884 * 15 13 12
17 17 C 1.53037 * 109.53775 * 61.36656 * 16 15 13
18 18 C 1.52998 * 109.50032 * 58.58643 * 17 16 15
19 19 C 1.53001 * 109.49654 * 178.68563 * 17 16 15
20 20 C 1.53628 * 109.24130 * 298.50503 * 17 16 15
21 21 N 1.46927 * 108.54031 * 54.86247 * 20 17 16
22 22 C 1.36935 * 120.63324 * 126.36176 * 21 20 17
23 23 H 1.08002 * 120.00138 * 206.29823 * 22 21 20
24 24 C 1.38817 * 119.99684 * 26.30687 * 22 21 20
25 25 N 1.31621 * 119.99724 * 199.46512 * 24 22 21
26 26 Si 1.86798 * 120.00123 * 19.46027 * 24 22 21
27 27 H 1.48504 * 109.46976 * 266.66736 * 26 24 22
28 28 H 1.48493 * 109.47151 * 26.66455 * 26 24 22
29 29 H 1.48501 * 109.47100 * 146.66762 * 26 24 22
30 30 H 1.09002 * 109.47055 * 264.05176 * 1 2 3
31 31 H 1.09006 * 109.46927 * 24.05355 * 1 2 3
32 32 H 1.08995 * 109.47181 * 144.05314 * 1 2 3
33 33 H 1.07993 * 120.36421 * 0.04009 * 3 2 1
34 34 H 0.96692 * 114.00584 * 89.99834 * 5 4 3
35 35 H 1.08005 * 119.68624 * 180.29344 * 7 6 4
36 36 H 0.96998 * 119.99957 * 0.02562 * 11 9 8
37 37 H 1.09001 * 109.47254 * 59.99747 * 12 11 9
38 38 H 1.09006 * 109.47009 * 300.00377 * 12 11 9
39 39 H 1.08999 * 109.49226 * 305.46213 * 15 13 12
40 40 H 1.08996 * 109.49252 * 65.55203 * 15 13 12
41 41 H 1.08997 * 109.46116 * 181.38957 * 16 15 13
42 42 H 1.09004 * 109.45984 * 301.34265 * 16 15 13
43 43 H 1.09003 * 109.47116 * 59.99749 * 18 17 16
44 44 H 1.09004 * 109.46864 * 180.02562 * 18 17 16
45 45 H 1.09000 * 109.46773 * 299.99509 * 18 17 16
46 46 H 1.09000 * 109.47695 * 59.99773 * 19 17 16
47 47 H 1.09003 * 109.47059 * 180.02562 * 19 17 16
48 48 H 1.08999 * 109.47031 * 299.99872 * 19 17 16
49 49 H 1.08990 * 109.74533 * 295.12374 * 20 17 16
50 50 H 1.08999 * 109.66468 * 174.54735 * 20 17 16
51 51 H 0.96999 * 120.00298 * 359.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2141 1.1851 0.0000
4 6 3.6048 1.1472 -0.0005
5 8 4.3043 2.3077 -0.0011
6 7 4.2548 -0.0067 -0.0005
7 6 3.6204 -1.1601 0.0058
8 6 2.2256 -1.2044 0.0006
9 6 1.5171 -2.4995 0.0011
10 8 0.3057 -2.5296 0.1003
11 7 2.2131 -3.6484 -0.1084
12 6 1.5100 -4.9336 -0.1085
13 6 2.5251 -6.0703 -0.2432
14 1 3.0892 -5.9489 -1.1680
15 6 1.7940 -7.4165 -0.2606
16 6 2.8215 -8.5506 -0.2568
17 6 3.6631 -8.4745 1.0191
18 6 2.7481 -8.5741 2.2412
19 6 4.6681 -9.6280 1.0374
20 6 4.4193 -7.1375 1.0478
21 7 3.4457 -6.0469 0.9018
22 6 3.4007 -5.0251 1.8123
23 1 2.4801 -4.4831 1.9707
24 6 4.5386 -4.6859 2.5315
25 7 4.4304 -3.9972 3.6479
26 14 6.2231 -5.2069 1.9150
27 1 6.6011 -6.4996 2.5405
28 1 6.1832 -5.3643 0.4390
29 1 7.2243 -4.1711 2.2755
30 1 -0.3633 -0.1065 1.0222
31 1 -0.3633 0.9385 -0.4189
32 1 -0.3633 -0.8319 -0.6032
33 1 1.6936 2.1313 0.0007
34 1 4.5078 2.6448 0.8821
35 1 4.1849 -2.0810 0.0104
36 1 3.1796 -3.6243 -0.1872
37 1 0.8135 -4.9667 -0.9463
38 1 0.9600 -5.0469 0.8258
39 1 1.1597 -7.4973 0.6222
40 1 1.1796 -7.4851 -1.1582
41 1 2.3043 -9.5093 -0.2941
42 1 3.4713 -8.4548 -1.1268
43 1 2.2108 -9.5222 2.2166
44 1 3.3480 -8.5194 3.1497
45 1 2.0335 -7.7511 2.2280
46 1 5.3206 -9.5555 0.1673
47 1 5.2670 -9.5737 1.9466
48 1 4.1325 -10.5770 1.0118
49 1 5.1345 -7.1013 0.2262
50 1 4.9446 -7.0336 1.9972
51 1 3.5557 -3.7263 3.9679
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001089692683.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:04
Heat of formation + Delta-G solvation = -42.389887 kcal
Electronic energy + Delta-G solvation = -32498.171087 eV
Core-core repulsion = 28397.486144 eV
Total energy + Delta-G solvation = -4100.684943 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-41.96457 -40.76437 -39.97041 -38.04733 -36.82288 -35.22704 -34.74865 -33.89029
-32.43060 -31.69692 -29.32332 -28.51745 -28.10126 -26.99816 -25.71248 -24.79282
-24.01669 -23.18469 -21.75315 -21.36763 -20.09423 -19.47910 -19.13011 -18.43340
-18.15311 -17.15781 -16.86966 -16.59030 -16.57416 -15.93911 -15.85133 -15.72923
-15.16967 -15.13936 -14.93520 -14.53699 -14.49618 -14.09454 -14.03510 -13.95179
-13.79170 -13.57493 -13.50904 -13.30144 -13.15357 -12.91471 -12.82058 -12.70657
-12.43148 -12.32656 -12.11292 -12.02782 -11.62376 -11.38585 -11.29588 -11.08227
-10.96240 -10.86883 -10.71104 -10.48796 -10.42970 -10.17882 -9.82613 -8.89409
-8.36004 -5.34543 -0.53847 0.04813 1.45181 1.55587 1.71881 1.73249
2.22846 2.44961 2.60886 2.72302 3.16025 3.40239 3.43288 3.58591
3.68521 3.87890 3.91777 3.93812 4.05870 4.18078 4.23437 4.33920
4.41676 4.43675 4.54791 4.58349 4.66575 4.68850 4.71861 4.75589
4.83414 4.85987 4.93683 4.97618 5.00688 5.02462 5.09470 5.10549
5.18303 5.26548 5.28540 5.39621 5.43994 5.47134 5.53960 5.60062
5.73651 6.00835 6.34144 6.49032 6.57748 6.73899 7.02725 7.20013
7.69584 8.21309 9.02228
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013779 B = 0.003776 C = 0.003224
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2031.533904 B = 7413.002971 C = 8683.609346
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C 0.024 3.976
3 C -0.187 4.187
4 C 0.329 3.671
5 O -0.484 6.484
6 N -0.537 5.537
7 C 0.167 3.833
8 C -0.213 4.213
9 C 0.557 3.443
10 O -0.571 6.571
11 N -0.689 5.689
12 C 0.142 3.858
13 C 0.160 3.840
14 H 0.051 0.949
15 C -0.125 4.125
16 C -0.091 4.091
17 C -0.084 4.084
18 C -0.121 4.121
19 C -0.136 4.136
20 C 0.130 3.870
21 N -0.611 5.611
22 C -0.297 4.297
23 H 0.051 0.949
24 C -0.064 4.064
25 N -0.961 5.961
26 Si 1.087 2.913
27 H -0.290 1.290
28 H -0.254 1.254
29 H -0.323 1.323
30 H 0.076 0.924
31 H 0.096 0.904
32 H 0.083 0.917
33 H 0.182 0.818
34 H 0.425 0.575
35 H 0.157 0.843
36 H 0.407 0.593
37 H 0.080 0.920
38 H 0.038 0.962
39 H 0.054 0.946
40 H 0.084 0.916
41 H 0.076 0.924
42 H 0.067 0.933
43 H 0.063 0.937
44 H 0.025 0.975
45 H 0.042 0.958
46 H 0.063 0.937
47 H 0.042 0.958
48 H 0.071 0.929
49 H 0.037 0.963
50 H 0.043 0.957
51 H 0.243 0.757
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.598 0.449 -10.754 11.704
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.016 3.984
3 C -0.208 4.208
4 C 0.151 3.849
5 O -0.295 6.295
6 N -0.257 5.257
7 C 0.009 3.991
8 C -0.219 4.219
9 C 0.344 3.656
10 O -0.453 6.453
11 N -0.338 5.338
12 C 0.018 3.982
13 C 0.055 3.945
14 H 0.069 0.931
15 C -0.165 4.165
16 C -0.128 4.128
17 C -0.086 4.086
18 C -0.178 4.178
19 C -0.194 4.194
20 C 0.006 3.994
21 N -0.336 5.336
22 C -0.427 4.427
23 H 0.069 0.931
24 C -0.259 4.259
25 N -0.604 5.604
26 Si 0.917 3.083
27 H -0.218 1.218
28 H -0.178 1.178
29 H -0.254 1.254
30 H 0.095 0.905
31 H 0.115 0.885
32 H 0.102 0.898
33 H 0.200 0.800
34 H 0.287 0.713
35 H 0.174 0.826
36 H 0.245 0.755
37 H 0.098 0.902
38 H 0.056 0.944
39 H 0.072 0.928
40 H 0.103 0.897
41 H 0.095 0.905
42 H 0.086 0.914
43 H 0.082 0.918
44 H 0.045 0.955
45 H 0.061 0.939
46 H 0.082 0.918
47 H 0.061 0.939
48 H 0.090 0.910
49 H 0.054 0.946
50 H 0.061 0.939
51 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -2.975 0.506 -10.985 11.392
hybrid contribution -1.604 0.210 1.148 1.984
sum -4.580 0.716 -9.837 10.874
Atomic orbital electron populations
1.21050 0.87634 1.04555 1.03758 1.20636 0.98490 0.90465 0.88786
1.22203 0.92998 1.00202 1.05390 1.19625 0.87926 0.85187 0.92122
1.84633 1.75840 1.32955 1.36107 1.67159 1.43012 0.98945 1.16556
1.22706 0.90698 0.95284 0.90449 1.20916 0.95044 0.94947 1.10971
1.18069 0.86695 0.84138 0.76667 1.90651 1.14251 1.87728 1.52706
1.45911 1.11341 1.05270 1.71320 1.21277 0.94571 0.81888 1.00456
1.20944 0.90171 0.93287 0.90119 0.93113 1.21949 0.98163 0.94283
1.02081 1.21407 0.96970 0.98267 0.96199 1.21092 0.96284 0.95053
0.96123 1.21648 0.98992 1.00764 0.96420 1.21802 0.98522 0.97545
1.01533 1.21605 0.91703 0.87765 0.98368 1.44483 1.40005 1.22835
1.26281 1.20091 0.95600 1.11097 1.15946 0.93115 1.26832 1.04543
0.98652 0.95862 1.71002 1.25501 1.43341 1.20599 0.83530 0.73667
0.74029 0.77100 1.21845 1.17842 1.25357 0.90528 0.88491 0.89809
0.80045 0.71313 0.82570 0.75517 0.90207 0.94406 0.92756 0.89738
0.90497 0.91417 0.91819 0.95539 0.93907 0.91816 0.93927 0.90964
0.94561 0.93878 0.94779
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.85 8.86 71.24 0.63 -2.22 16
2 C 0.02 0.71 5.95 -19.43 -0.12 0.59 16
3 C -0.19 -4.54 9.70 22.43 0.22 -4.33 16
4 C 0.33 9.30 7.74 84.81 0.66 9.96 16
5 O -0.48 -10.91 13.55 -88.02 -1.19 -12.10 16
6 N -0.54 -18.66 10.37 -307.80 -3.19 -21.86 16
7 C 0.17 5.96 10.69 85.04 0.91 6.87 16
8 C -0.21 -7.39 5.89 -19.99 -0.12 -7.50 16
9 C 0.56 21.09 7.72 86.72 0.67 21.76 16
10 O -0.57 -23.14 13.47 -3.97 -0.05 -23.20 16
11 N -0.69 -25.46 3.76 -466.20 -1.75 -27.22 16
12 C 0.14 4.95 4.42 86.38 0.38 5.33 16
13 C 0.16 5.27 2.99 44.97 0.13 5.40 16
14 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16
15 C -0.13 -3.38 5.04 30.67 0.15 -3.22 16
16 C -0.09 -2.24 4.71 30.62 0.14 -2.09 16
17 C -0.08 -2.52 0.77 -51.96 -0.04 -2.56 16
18 C -0.12 -3.96 7.99 71.98 0.58 -3.38 16
19 C -0.14 -3.38 8.48 71.98 0.61 -2.77 16
20 C 0.13 4.95 2.90 86.51 0.25 5.20 16
21 N -0.61 -24.75 2.21 -674.37 -1.49 -26.24 16
22 C -0.30 -14.73 7.55 84.04 0.63 -14.09 16
23 H 0.05 2.81 5.82 -2.91 -0.02 2.80 16
24 C -0.06 -3.48 5.27 84.86 0.45 -3.04 16
25 N -0.96 -58.72 13.71 21.65 0.30 -58.43 16
26 Si 1.09 50.95 24.67 68.60 1.69 52.65 16
27 H -0.29 -13.16 6.63 99.48 0.66 -12.50 16
28 H -0.25 -10.51 6.45 99.48 0.64 -9.87 16
29 H -0.32 -16.22 7.11 99.48 0.71 -15.51 16
30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
31 H 0.10 1.68 8.07 -2.38 -0.02 1.67 16
32 H 0.08 2.45 5.91 -2.39 -0.01 2.44 16
33 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16
34 H 0.42 5.32 9.06 -74.06 -0.67 4.65 16
35 H 0.16 5.71 6.45 -2.91 -0.02 5.69 16
36 H 0.41 15.30 5.58 -92.71 -0.52 14.78 16
37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16
38 H 0.04 1.56 7.38 -2.38 -0.02 1.54 16
39 H 0.05 1.64 6.34 -2.39 -0.02 1.62 16
40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
44 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16
45 H 0.04 1.61 5.97 -2.39 -0.01 1.59 16
46 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16
47 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16
48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
49 H 0.04 1.32 6.99 -2.39 -0.02 1.30 16
50 H 0.04 1.91 4.28 -2.39 -0.01 1.90 16
51 H 0.24 15.29 8.73 -92.71 -0.81 14.48 16
Total: -1.00 -69.64 386.77 0.08 -69.56
By element:
Atomic # 1 Polarization: 37.28 SS G_CDS: -0.37 Total: 36.91 kcal
Atomic # 6 Polarization: 3.78 SS G_CDS: 6.14 Total: 9.92 kcal
Atomic # 7 Polarization: -127.60 SS G_CDS: -6.14 Total: -133.74 kcal
Atomic # 8 Polarization: -34.05 SS G_CDS: -1.25 Total: -35.30 kcal
Atomic # 14 Polarization: 50.95 SS G_CDS: 1.69 Total: 52.65 kcal
Total: -69.64 0.08 -69.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001089692683.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.175 kcal
(2) G-P(sol) polarization free energy of solvation -69.642 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.468 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.390 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds