Wall clock time and date at job start Wed Apr 1 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35924 * 117.00208 * 2 1 4 4 C 1.38853 * 120.40370 * 0.02562 * 3 2 1 5 5 N 1.31871 * 120.99850 * 179.97438 * 4 3 2 6 6 C 1.31688 * 121.94294 * 0.02562 * 5 4 3 7 7 C 1.39524 * 120.69005 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.53121 * 180.02562 * 7 6 5 9 9 O 1.21548 * 119.99912 * 173.93066 * 8 7 6 10 10 N 1.34778 * 120.00034 * 353.92761 * 8 7 6 11 11 C 1.46498 * 119.99858 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46877 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46958 * 180.02562 * 12 11 10 14 14 H 1.08998 * 110.64123 * 51.86682 * 13 12 11 15 15 C 1.54334 * 111.00518 * 288.78445 * 13 12 11 16 16 N 1.47023 * 107.26770 * 219.60437 * 15 13 12 17 17 C 1.36934 * 125.64928 * 178.85083 * 16 15 13 18 18 H 1.08005 * 119.99990 * 359.43474 * 17 16 15 19 19 C 1.38813 * 119.99964 * 179.71471 * 17 16 15 20 20 N 1.31613 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47031 * 89.99855 * 21 19 17 23 23 H 1.48497 * 109.47025 * 209.99942 * 21 19 17 24 24 H 1.48496 * 109.47187 * 329.99993 * 21 19 17 25 25 C 1.47423 * 108.70090 * 358.58153 * 16 15 13 26 26 C 1.54910 * 104.83488 * 24.36030 * 25 16 15 27 27 H 1.09001 * 111.00575 * 81.06070 * 26 25 16 28 28 C 1.52994 * 111.00577 * 204.87898 * 26 25 16 29 29 C 1.38836 * 120.40378 * 180.23957 * 3 2 1 30 30 C 1.50702 * 120.88429 * 0.02562 * 29 3 2 31 31 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47021 * 299.99839 * 1 2 3 33 33 H 1.08998 * 109.47049 * 59.99351 * 1 2 3 34 34 H 1.08000 * 119.49813 * 359.95899 * 4 3 2 35 35 H 1.08003 * 119.65290 * 179.97438 * 6 5 4 36 36 H 0.96999 * 119.99581 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.47029 * 60.00511 * 11 10 8 38 38 H 1.08990 * 109.47396 * 300.00004 * 11 10 8 39 39 H 1.08999 * 109.46732 * 60.00503 * 12 11 10 40 40 H 1.08997 * 109.47860 * 300.00503 * 12 11 10 41 41 H 1.08995 * 109.99191 * 100.12757 * 15 13 12 42 42 H 1.08999 * 109.78019 * 338.95727 * 15 13 12 43 43 H 0.96999 * 120.00142 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.36551 * 143.19848 * 25 16 15 45 45 H 1.09001 * 110.36781 * 265.51660 * 25 16 15 46 46 H 1.08996 * 109.47697 * 58.54215 * 28 26 25 47 47 H 1.09000 * 109.47241 * 178.54683 * 28 26 25 48 48 H 1.09006 * 109.46707 * 298.54139 * 28 26 25 49 49 H 1.08993 * 109.46902 * 263.93702 * 30 29 3 50 50 H 1.09002 * 109.46713 * 23.93439 * 30 29 3 51 51 H 1.09000 * 109.47407 * 143.93526 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5620 0.0010 6 6 3.1954 3.6891 0.0006 7 6 4.0199 2.5635 0.0000 8 6 5.4912 2.7102 0.0001 9 8 6.1998 1.7289 0.1109 10 7 6.0466 3.9321 -0.1228 11 6 7.5043 4.0775 -0.1222 12 6 7.8695 5.5554 -0.2749 13 6 9.3919 5.7072 -0.2749 14 1 9.8448 5.0376 -1.0061 15 6 9.9738 5.4466 1.1306 16 7 11.0482 6.4268 1.3466 17 6 11.8032 6.5459 2.4828 18 1 11.6236 5.8899 3.3218 19 6 12.7954 7.5137 2.5585 20 7 13.0109 8.3164 1.5380 21 14 13.8249 7.6766 4.1087 22 1 15.0254 6.8093 3.9992 23 1 14.2489 9.0900 4.2750 24 1 13.0189 7.2600 5.2843 25 6 11.1823 7.2559 0.1351 26 6 9.7969 7.1789 -0.5537 27 1 9.0926 7.8717 -0.0932 28 6 9.9161 7.4404 -2.0564 29 6 3.4321 1.2935 -0.0050 30 6 4.2810 0.0483 -0.0111 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 0.2197 2.3226 0.0003 35 1 3.6367 4.6748 0.0006 36 1 5.4810 4.7152 -0.2110 37 1 7.9262 3.5117 -0.9529 38 1 7.9069 3.6986 0.8171 39 1 7.4476 6.1215 0.5555 40 1 7.4670 5.9340 -1.2144 41 1 10.3778 4.4358 1.1851 42 1 9.1955 5.5781 1.8822 43 1 13.7041 8.9929 1.5910 44 1 11.4153 8.2862 0.4043 45 1 11.9542 6.8500 -0.5189 46 1 10.5915 6.7090 -2.5001 47 1 8.9330 7.3549 -2.5192 48 1 10.3088 8.4440 -2.2204 49 1 4.5791 -0.1931 1.0091 50 1 3.7079 -0.7800 -0.4278 51 1 5.1698 0.2174 -0.6190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103142893.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:29 Heat of formation + Delta-G solvation = -19.659790 kcal Electronic energy + Delta-G solvation = -29948.760969 eV Core-core repulsion = 25849.061677 eV Total energy + Delta-G solvation = -4099.699292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.41724 -39.78107 -38.40510 -38.06917 -35.52131 -33.96783 -33.32616 -31.82739 -30.74367 -30.46317 -28.26119 -28.10240 -26.83158 -25.66828 -24.59438 -23.74436 -22.72336 -21.91182 -21.01936 -19.71872 -19.27631 -18.59384 -17.84961 -16.86035 -16.75232 -16.67994 -16.48481 -15.81753 -15.75184 -15.10471 -14.64185 -14.53964 -14.15824 -14.11052 -13.68448 -13.51030 -13.33830 -13.08075 -13.02731 -12.96641 -12.80332 -12.56239 -12.23020 -12.04710 -12.02162 -11.93041 -11.65074 -11.48022 -11.11321 -11.02279 -10.82949 -10.74108 -10.40812 -10.09058 -9.90648 -9.89140 -9.83004 -9.70337 -9.64182 -9.30350 -9.15322 -8.91788 -8.61691 -6.78497 -5.61838 -3.03082 0.20015 0.78150 2.51348 2.57740 3.03095 3.40615 3.42045 3.47035 3.48831 3.88227 4.05049 4.29936 4.33811 4.51753 4.52699 4.60235 4.71054 4.80982 4.92719 4.97876 5.09512 5.18845 5.28554 5.35435 5.47558 5.54203 5.54945 5.56869 5.67349 5.75968 5.79050 5.82692 5.92785 5.97705 6.11256 6.18167 6.25797 6.27981 6.32767 6.36502 6.57836 6.63872 6.65402 6.71543 6.85310 7.04219 7.26702 7.38806 7.58587 7.67291 7.90268 7.97249 8.40451 9.26263 9.87295 10.52723 11.41852 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.001807 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.663350 B =15489.446876 C =16048.294212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.066 3.934 4 C 0.040 3.960 5 N -0.456 5.456 6 C 0.102 3.898 7 C -0.153 4.153 8 C 0.561 3.439 9 O -0.524 6.524 10 N -0.720 5.720 11 C 0.118 3.882 12 C -0.117 4.117 13 C -0.092 4.092 14 H 0.072 0.928 15 C 0.139 3.861 16 N -0.606 5.606 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.159 3.841 26 C -0.115 4.115 27 H 0.068 0.932 28 C -0.133 4.133 29 C -0.011 4.011 30 C -0.114 4.114 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.399 0.601 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.251 0.749 44 H 0.105 0.895 45 H 0.011 0.989 46 H 0.050 0.950 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.127 -12.116 -7.610 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.018 3.982 4 C -0.117 4.117 5 N -0.165 5.165 6 C -0.058 4.058 7 C -0.159 4.159 8 C 0.347 3.653 9 O -0.401 6.401 10 N -0.372 5.372 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.112 4.112 14 H 0.091 0.909 15 C 0.013 3.987 16 N -0.331 5.331 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.034 3.966 26 C -0.134 4.134 27 H 0.086 0.914 28 C -0.191 4.191 29 C -0.020 4.020 30 C -0.170 4.170 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.062 0.938 44 H 0.122 0.878 45 H 0.029 0.971 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.858 -12.165 -7.426 29.526 hybrid contribution 0.446 -0.119 0.773 0.900 sum -25.412 -12.284 -6.653 28.999 Atomic orbital electron populations 1.23167 0.77806 1.04641 1.01633 1.86107 1.21647 1.25448 1.88529 1.19774 0.92336 0.86117 0.99959 1.23088 1.00762 0.87060 1.00819 1.67534 1.11862 1.25987 1.11165 1.22860 0.88760 0.98105 0.96057 1.20759 0.94866 0.93821 1.06420 1.17894 0.86639 0.83636 0.77176 1.90766 1.63061 1.37336 1.48942 1.45997 1.08883 1.08211 1.74092 1.21569 0.78063 0.97792 1.03027 1.21800 0.97315 0.94115 1.02301 1.22145 0.92543 0.98070 0.98427 0.90913 1.21374 0.91190 0.93063 0.93039 1.44500 1.38326 1.36136 1.14144 1.19090 1.10466 1.13758 0.91569 0.90567 1.24779 0.99411 0.98618 0.97995 1.69801 1.34916 1.22899 1.29527 0.86086 0.80268 0.76945 0.82298 1.21679 1.21689 1.20739 1.21965 0.89299 0.99583 0.85782 1.22631 1.01164 0.94482 0.95170 0.91368 1.21633 1.00176 1.01464 0.95818 1.19868 0.90816 0.95984 0.95350 1.20933 0.99504 0.92468 1.04135 0.87659 0.92261 0.92298 0.82053 0.82042 0.76574 0.91175 0.90655 0.91092 0.91483 0.96273 0.95991 0.93812 0.87780 0.97096 0.93090 0.93859 0.92810 0.90031 0.91391 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.42 9.57 -19.50 -0.19 -2.61 16 3 C 0.07 0.60 6.68 -39.13 -0.26 0.34 16 4 C 0.04 0.33 10.21 -17.31 -0.18 0.16 16 5 N -0.46 -4.47 10.34 -12.80 -0.13 -4.60 16 6 C 0.10 0.93 10.69 -17.13 -0.18 0.75 16 7 C -0.15 -1.62 5.89 -104.84 -0.62 -2.24 16 8 C 0.56 6.76 7.72 -12.33 -0.10 6.66 16 9 O -0.52 -7.87 13.51 5.32 0.07 -7.80 16 10 N -0.72 -7.41 5.51 -61.25 -0.34 -7.74 16 11 C 0.12 1.43 5.56 -4.04 -0.02 1.41 16 12 C -0.12 -1.43 4.74 -26.73 -0.13 -1.56 16 13 C -0.09 -1.51 2.38 -88.78 -0.21 -1.72 16 14 H 0.07 1.17 8.02 -51.93 -0.42 0.76 16 15 C 0.14 2.88 6.25 -3.06 -0.02 2.86 16 16 N -0.61 -15.58 3.39 -170.06 -0.58 -16.16 16 17 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 18 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 20 N -0.92 -27.02 10.09 55.49 0.56 -26.46 16 21 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.16 3.81 5.35 -2.53 -0.01 3.80 16 26 C -0.11 -2.07 3.09 -88.47 -0.27 -2.34 16 27 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 28 C -0.13 -2.00 9.30 37.15 0.35 -1.66 16 29 C -0.01 -0.12 5.97 -103.76 -0.62 -0.74 16 30 C -0.11 -1.20 8.69 36.01 0.31 -0.88 16 31 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 33 H 0.06 0.15 7.67 -51.93 -0.40 -0.25 16 34 H 0.16 0.86 6.30 -52.49 -0.33 0.53 16 35 H 0.16 1.04 6.46 -52.48 -0.34 0.70 16 36 H 0.40 2.99 6.57 -40.82 -0.27 2.72 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 39 H 0.07 0.88 7.95 -51.93 -0.41 0.46 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.10 2.84 5.88 -51.93 -0.31 2.53 16 45 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 46 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 47 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.07 0.62 7.45 -51.93 -0.39 0.24 16 51 H 0.10 1.17 5.96 -51.93 -0.31 0.86 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -33.78 404.05 -8.88 -42.66 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.13 Total: 0.27 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.22 Total: -0.92 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.49 Total: -54.97 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.11 Total: -10.41 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.78 -8.88 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103142893.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.998 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds