Wall clock time and date at job start Wed Apr 1 2020 05:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35924 * 117.00208 * 2 1 4 4 C 1.38853 * 120.40370 * 0.02562 * 3 2 1 5 5 N 1.31871 * 120.99850 * 179.97438 * 4 3 2 6 6 C 1.31688 * 121.94294 * 0.02562 * 5 4 3 7 7 C 1.39524 * 120.69005 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.53121 * 180.02562 * 7 6 5 9 9 O 1.21548 * 119.99912 * 173.93066 * 8 7 6 10 10 N 1.34778 * 120.00034 * 353.92761 * 8 7 6 11 11 C 1.46498 * 119.99858 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46877 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46958 * 180.02562 * 12 11 10 14 14 H 1.08998 * 110.64123 * 51.86682 * 13 12 11 15 15 C 1.54334 * 111.00518 * 288.78445 * 13 12 11 16 16 N 1.47023 * 107.26770 * 219.60437 * 15 13 12 17 17 C 1.36934 * 125.64928 * 178.85083 * 16 15 13 18 18 H 1.08005 * 119.99990 * 359.43474 * 17 16 15 19 19 C 1.38813 * 119.99964 * 179.71471 * 17 16 15 20 20 N 1.31613 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47031 * 89.99855 * 21 19 17 23 23 H 1.48497 * 109.47025 * 209.99942 * 21 19 17 24 24 H 1.48496 * 109.47187 * 329.99993 * 21 19 17 25 25 C 1.47423 * 108.70090 * 358.58153 * 16 15 13 26 26 C 1.54910 * 104.83488 * 24.36030 * 25 16 15 27 27 H 1.09001 * 111.00575 * 81.06070 * 26 25 16 28 28 C 1.52994 * 111.00577 * 204.87898 * 26 25 16 29 29 C 1.38836 * 120.40378 * 180.23957 * 3 2 1 30 30 C 1.50702 * 120.88429 * 0.02562 * 29 3 2 31 31 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47021 * 299.99839 * 1 2 3 33 33 H 1.08998 * 109.47049 * 59.99351 * 1 2 3 34 34 H 1.08000 * 119.49813 * 359.95899 * 4 3 2 35 35 H 1.08003 * 119.65290 * 179.97438 * 6 5 4 36 36 H 0.96999 * 119.99581 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.47029 * 60.00511 * 11 10 8 38 38 H 1.08990 * 109.47396 * 300.00004 * 11 10 8 39 39 H 1.08999 * 109.46732 * 60.00503 * 12 11 10 40 40 H 1.08997 * 109.47860 * 300.00503 * 12 11 10 41 41 H 1.08995 * 109.99191 * 100.12757 * 15 13 12 42 42 H 1.08999 * 109.78019 * 338.95727 * 15 13 12 43 43 H 0.96999 * 120.00142 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.36551 * 143.19848 * 25 16 15 45 45 H 1.09001 * 110.36781 * 265.51660 * 25 16 15 46 46 H 1.08996 * 109.47697 * 58.54215 * 28 26 25 47 47 H 1.09000 * 109.47241 * 178.54683 * 28 26 25 48 48 H 1.09006 * 109.46707 * 298.54139 * 28 26 25 49 49 H 1.08993 * 109.46902 * 263.93702 * 30 29 3 50 50 H 1.09002 * 109.46713 * 23.93439 * 30 29 3 51 51 H 1.09000 * 109.47407 * 143.93526 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5620 0.0010 6 6 3.1954 3.6891 0.0006 7 6 4.0199 2.5635 0.0000 8 6 5.4912 2.7102 0.0001 9 8 6.1998 1.7289 0.1109 10 7 6.0466 3.9321 -0.1228 11 6 7.5043 4.0775 -0.1222 12 6 7.8695 5.5554 -0.2749 13 6 9.3919 5.7072 -0.2749 14 1 9.8448 5.0376 -1.0061 15 6 9.9738 5.4466 1.1306 16 7 11.0482 6.4268 1.3466 17 6 11.8032 6.5459 2.4828 18 1 11.6236 5.8899 3.3218 19 6 12.7954 7.5137 2.5585 20 7 13.0109 8.3164 1.5380 21 14 13.8249 7.6766 4.1087 22 1 15.0254 6.8093 3.9992 23 1 14.2489 9.0900 4.2750 24 1 13.0189 7.2600 5.2843 25 6 11.1823 7.2559 0.1351 26 6 9.7969 7.1789 -0.5537 27 1 9.0926 7.8717 -0.0932 28 6 9.9161 7.4404 -2.0564 29 6 3.4321 1.2935 -0.0050 30 6 4.2810 0.0483 -0.0111 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 0.2197 2.3226 0.0003 35 1 3.6367 4.6748 0.0006 36 1 5.4810 4.7152 -0.2110 37 1 7.9262 3.5117 -0.9529 38 1 7.9069 3.6986 0.8171 39 1 7.4476 6.1215 0.5555 40 1 7.4670 5.9340 -1.2144 41 1 10.3778 4.4358 1.1851 42 1 9.1955 5.5781 1.8822 43 1 13.7041 8.9929 1.5910 44 1 11.4153 8.2862 0.4043 45 1 11.9542 6.8500 -0.5189 46 1 10.5915 6.7090 -2.5001 47 1 8.9330 7.3549 -2.5192 48 1 10.3088 8.4440 -2.2204 49 1 4.5791 -0.1931 1.0091 50 1 3.7079 -0.7800 -0.4278 51 1 5.1698 0.2174 -0.6190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103142893.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:27 Heat of formation + Delta-G solvation = -42.003799 kcal Electronic energy + Delta-G solvation = -29949.729878 eV Core-core repulsion = 25849.061677 eV Total energy + Delta-G solvation = -4100.668201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 7.80 seconds Orbital eigenvalues (eV) -42.11777 -40.62493 -39.71002 -38.92826 -36.63581 -35.08806 -34.69840 -32.91658 -32.51676 -31.45669 -29.09874 -28.51911 -28.27113 -27.35861 -25.82463 -24.78713 -23.68435 -23.06682 -21.90385 -21.34083 -20.66641 -19.34473 -18.86003 -18.51608 -17.47396 -17.37300 -17.13244 -17.03138 -16.71046 -16.51156 -15.99957 -15.59836 -15.21912 -15.14330 -14.97076 -14.62143 -14.43610 -14.15975 -14.02563 -13.87431 -13.79138 -13.62474 -13.45863 -13.34600 -13.14142 -12.84616 -12.75855 -12.72732 -12.71633 -12.38455 -12.36546 -12.16907 -11.94155 -11.76440 -11.40498 -11.27619 -11.20411 -10.95533 -10.73245 -10.68996 -10.44484 -10.07075 -9.53717 -8.85678 -7.76279 -5.20480 -0.52463 0.08666 1.45103 1.46980 1.55736 1.73126 1.86736 2.31768 2.49556 2.67480 3.27340 3.32146 3.41100 3.61248 3.63647 3.73120 3.76785 3.94564 3.99793 4.09036 4.10023 4.30183 4.35748 4.38342 4.40351 4.53372 4.55059 4.63586 4.66485 4.70484 4.76526 4.77633 4.82068 4.86322 5.03595 5.04017 5.04899 5.13377 5.15735 5.22023 5.30613 5.36141 5.42766 5.45667 5.47947 5.57745 5.79287 5.87730 6.13499 6.34077 6.45131 6.71764 7.11723 7.13056 7.81351 8.45141 9.24852 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.001807 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.663350 B =15489.446876 C =16048.294212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.066 3.934 4 C 0.045 3.955 5 N -0.470 5.470 6 C 0.104 3.896 7 C -0.164 4.164 8 C 0.560 3.440 9 O -0.561 6.561 10 N -0.706 5.706 11 C 0.125 3.875 12 C -0.102 4.102 13 C -0.078 4.078 14 H 0.077 0.923 15 C 0.133 3.867 16 N -0.629 5.629 17 C -0.240 4.240 18 H 0.076 0.924 19 C -0.068 4.068 20 N -0.947 5.947 21 Si 0.979 3.021 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.270 1.270 25 C 0.159 3.841 26 C -0.101 4.101 27 H 0.072 0.928 28 C -0.127 4.127 29 C -0.034 4.034 30 C -0.106 4.106 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.193 0.807 35 H 0.188 0.812 36 H 0.415 0.585 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.011 0.989 42 H 0.027 0.973 43 H 0.246 0.754 44 H 0.068 0.932 45 H -0.019 1.019 46 H 0.047 0.953 47 H 0.081 0.919 48 H 0.049 0.951 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.235 -11.999 -8.231 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.018 3.982 4 C -0.112 4.112 5 N -0.179 5.179 6 C -0.055 4.055 7 C -0.169 4.169 8 C 0.347 3.653 9 O -0.441 6.441 10 N -0.358 5.358 11 C 0.002 3.998 12 C -0.140 4.140 13 C -0.098 4.098 14 H 0.096 0.904 15 C 0.008 3.992 16 N -0.355 5.355 17 C -0.369 4.369 18 H 0.094 0.906 19 C -0.261 4.261 20 N -0.597 5.597 21 Si 0.807 3.193 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.195 1.195 25 C 0.034 3.966 26 C -0.120 4.120 27 H 0.091 0.909 28 C -0.184 4.184 29 C -0.043 4.043 30 C -0.163 4.163 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.209 0.791 35 H 0.205 0.795 36 H 0.254 0.746 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.029 0.971 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.086 0.914 45 H -0.001 1.001 46 H 0.066 0.934 47 H 0.100 0.900 48 H 0.068 0.932 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -29.012 -12.042 -8.055 32.429 hybrid contribution 1.340 -0.237 0.983 1.678 sum -27.672 -12.280 -7.073 31.090 Atomic orbital electron populations 1.23508 0.75562 1.06317 1.02890 1.86098 1.23976 1.24960 1.88276 1.19786 0.91855 0.86990 0.99545 1.23567 1.02130 0.86328 0.99134 1.67626 1.12006 1.26581 1.11715 1.23206 0.88591 0.98636 0.95034 1.20660 0.93907 0.94480 1.07858 1.18166 0.87258 0.83476 0.76444 1.90755 1.64003 1.38624 1.50750 1.45790 1.08278 1.08467 1.73316 1.21346 0.79048 0.97606 1.01821 1.21651 0.93843 0.94161 1.04305 1.22047 0.95441 0.96809 0.95462 0.90447 1.21587 0.90066 0.91453 0.96099 1.44851 1.39105 1.37635 1.13921 1.19447 1.11074 1.13717 0.92648 0.90594 1.25619 1.00790 0.98592 1.01058 1.70068 1.35199 1.23264 1.31188 0.85074 0.78530 0.76588 0.79123 1.21557 1.21693 1.19539 1.21786 0.92391 0.96965 0.85430 1.22471 0.97080 0.95684 0.96787 0.90916 1.21596 1.02357 1.01161 0.93327 1.20025 0.91863 0.95963 0.96432 1.20789 0.99018 0.93194 1.03260 0.85964 0.91046 0.90887 0.79078 0.79538 0.74636 0.91445 0.92897 0.90578 0.88185 0.97136 0.95547 0.94383 0.91402 1.00087 0.93393 0.89994 0.93178 0.90948 0.90521 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.57 9.57 -92.69 -0.89 -5.45 16 3 C 0.07 1.11 6.68 22.56 0.15 1.26 16 4 C 0.05 0.65 10.21 84.83 0.87 1.51 16 5 N -0.47 -8.00 10.34 -194.39 -2.01 -10.01 16 6 C 0.10 1.67 10.69 85.02 0.91 2.58 16 7 C -0.16 -3.29 5.89 -20.01 -0.12 -3.41 16 8 C 0.56 13.11 7.72 86.79 0.67 13.78 16 9 O -0.56 -17.20 13.51 -3.87 -0.05 -17.26 16 10 N -0.71 -13.11 5.51 -465.98 -2.57 -15.68 16 11 C 0.13 2.82 5.56 86.38 0.48 3.30 16 12 C -0.10 -2.17 4.74 30.59 0.14 -2.03 16 13 C -0.08 -2.44 2.38 -9.60 -0.02 -2.46 16 14 H 0.08 2.37 8.02 -2.39 -0.02 2.35 16 15 C 0.13 5.52 6.25 86.73 0.54 6.07 16 16 N -0.63 -33.24 3.39 -691.96 -2.35 -35.59 16 17 C -0.24 -13.87 10.27 84.03 0.86 -13.01 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 19 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 20 N -0.95 -57.42 10.09 21.65 0.22 -57.20 16 21 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 C 0.16 7.89 5.35 86.86 0.47 8.36 16 26 C -0.10 -3.51 3.09 -9.40 -0.03 -3.54 16 27 H 0.07 2.49 8.05 -2.39 -0.02 2.47 16 28 C -0.13 -3.51 9.30 71.98 0.67 -2.84 16 29 C -0.03 -0.70 5.97 -19.30 -0.12 -0.82 16 30 C -0.11 -2.29 8.69 71.24 0.62 -1.67 16 31 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.07 0.18 7.67 -2.39 -0.02 0.16 16 33 H 0.07 0.16 7.67 -2.39 -0.02 0.14 16 34 H 0.19 1.37 6.30 -2.91 -0.02 1.35 16 35 H 0.19 1.80 6.46 -2.91 -0.02 1.78 16 36 H 0.42 4.87 6.57 -92.71 -0.61 4.26 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.45 7.69 -2.39 -0.02 1.43 16 39 H 0.08 1.62 7.95 -2.39 -0.02 1.60 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.03 1.07 7.70 -2.39 -0.02 1.06 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.07 3.86 5.88 -2.38 -0.01 3.85 16 45 H -0.02 -1.02 8.04 -2.39 -0.02 -1.04 16 46 H 0.05 1.35 8.11 -2.39 -0.02 1.34 16 47 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.08 1.43 7.45 -2.39 -0.02 1.41 16 51 H 0.08 2.03 5.96 -2.39 -0.01 2.02 16 Total: -1.00 -77.13 404.05 2.39 -74.75 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.33 Total: 12.91 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 7.68 Total: 4.76 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -6.71 Total: -118.47 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.94 Total: -22.71 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -77.13 2.39 -74.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103142893.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.743 kcal (2) G-P(sol) polarization free energy of solvation -77.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.80 seconds