Wall clock time and date at job start Wed Apr 1 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40199 * 120.36992 * 2 1 4 4 C 1.35346 * 119.95135 * 179.76542 * 3 2 1 5 5 N 1.35763 * 120.70107 * 0.51442 * 4 3 2 6 6 C 1.46496 * 119.62745 * 179.76334 * 5 4 3 7 7 C 1.50703 * 109.46880 * 269.72406 * 6 5 4 8 8 O 1.21287 * 119.99750 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00089 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00059 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47361 * 179.97438 * 11 10 9 13 13 H 1.08995 * 110.64134 * 51.86079 * 12 11 10 14 14 C 1.54340 * 110.84892 * 288.69215 * 12 11 10 15 15 N 1.47022 * 107.26661 * 219.67266 * 14 12 11 16 16 C 1.36935 * 125.64921 * 178.85725 * 15 14 12 17 17 H 1.08001 * 119.99955 * 191.19127 * 16 15 14 18 18 C 1.38811 * 119.99853 * 11.18200 * 16 15 14 19 19 N 1.31621 * 120.00295 * 206.17070 * 18 16 15 20 20 Si 1.86803 * 119.99841 * 26.17539 * 18 16 15 21 21 H 1.48497 * 109.47088 * 275.72957 * 20 18 16 22 22 H 1.48499 * 109.47011 * 35.73234 * 20 18 16 23 23 H 1.48502 * 109.46918 * 155.73052 * 20 18 16 24 24 C 1.47426 * 108.69923 * 358.58709 * 15 14 12 25 25 C 1.54908 * 104.83480 * 24.35526 * 24 15 14 26 26 H 1.08998 * 111.00265 * 81.06412 * 25 24 15 27 27 C 1.53006 * 111.00222 * 204.87534 * 25 24 15 28 28 C 1.34667 * 120.74808 * 359.47900 * 5 4 3 29 29 O 1.22061 * 119.98239 * 180.28120 * 28 5 4 30 30 C 1.36402 * 120.36875 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47036 * 269.97648 * 1 2 3 32 32 H 1.08998 * 109.47040 * 29.98010 * 1 2 3 33 33 H 1.08996 * 109.46895 * 149.97901 * 1 2 3 34 34 H 1.07999 * 120.01743 * 0.04212 * 3 2 1 35 35 H 1.08000 * 119.65102 * 180.27103 * 4 3 2 36 36 H 1.08995 * 109.47650 * 149.72189 * 6 5 4 37 37 H 1.09005 * 109.47002 * 29.72100 * 6 5 4 38 38 H 0.97000 * 120.00051 * 359.97438 * 9 7 6 39 39 H 1.09005 * 109.47557 * 59.99924 * 10 9 7 40 40 H 1.09005 * 109.47129 * 299.99800 * 10 9 7 41 41 H 1.09008 * 109.47140 * 60.00237 * 11 10 9 42 42 H 1.08996 * 109.47309 * 300.00018 * 11 10 9 43 43 H 1.09004 * 109.98713 * 100.19885 * 14 12 11 44 44 H 1.08999 * 109.77698 * 339.03233 * 14 12 11 45 45 H 0.96991 * 120.00246 * 180.02562 * 19 18 16 46 46 H 1.09006 * 110.36309 * 143.20052 * 24 15 14 47 47 H 1.09004 * 110.36674 * 265.51272 * 24 15 14 48 48 H 1.08991 * 109.46861 * 58.54923 * 27 25 24 49 49 H 1.09000 * 109.46110 * 178.54964 * 27 25 24 50 50 H 1.09000 * 109.47063 * 298.54538 * 27 25 24 51 51 H 1.08003 * 120.34471 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.2096 0.0000 4 6 3.5693 1.1997 0.0048 5 7 4.2539 0.0274 -0.0008 6 6 5.7188 0.0442 -0.0007 7 6 6.2211 0.0499 -1.4215 8 8 5.4330 0.0404 -2.3434 9 7 7.5461 0.0656 -1.6678 10 6 8.0345 0.0707 -3.0489 11 6 9.5643 0.0896 -3.0489 12 6 10.0744 0.0942 -4.4914 13 1 9.5987 0.8900 -5.0646 14 6 9.8387 -1.2758 -5.1618 15 7 11.0243 -1.5714 -5.9794 16 6 11.2205 -2.7066 -6.7196 17 1 12.1929 -2.9153 -7.1408 18 6 10.1698 -3.5893 -6.9284 19 7 10.4150 -4.8615 -7.1599 20 14 8.4075 -2.9714 -6.8810 21 1 7.9325 -2.9375 -5.4745 22 1 8.3468 -1.6040 -7.4572 23 1 7.5424 -3.8815 -7.6739 24 6 11.9640 -0.4402 -5.8755 25 6 11.6186 0.2398 -4.5271 26 1 12.0803 -0.2891 -3.6934 27 6 12.0315 1.7130 -4.5343 28 6 3.6017 -1.1508 -0.0008 29 8 4.2313 -2.1965 -0.0007 30 6 2.1966 -1.1769 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6822 2.1485 0.0007 35 1 4.1104 2.1344 0.0092 36 1 6.0923 -0.8415 0.5131 37 1 6.0718 0.9383 0.5131 38 1 8.1764 0.0736 -0.9305 39 1 7.6605 0.9560 -3.5634 40 1 7.6818 -0.8239 -3.5623 41 1 9.9387 -0.7955 -2.5344 42 1 9.9166 0.9844 -2.5358 43 1 8.9527 -1.2331 -5.7954 44 1 9.7142 -2.0436 -4.3981 45 1 9.6808 -5.4782 -7.3062 46 1 12.9925 -0.8012 -5.8660 47 1 11.8130 0.2555 -6.7009 48 1 11.5242 2.2285 -5.3497 49 1 11.7543 2.1725 -3.5856 50 1 13.1101 1.7874 -4.6727 51 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103481853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:53 Heat of formation + Delta-G solvation = -13.779095 kcal Electronic energy + Delta-G solvation = -30369.438305 eV Core-core repulsion = 26269.994018 eV Total energy + Delta-G solvation = -4099.444286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.75936 -39.67533 -38.52478 -37.25630 -35.75306 -35.23659 -33.35224 -31.86118 -30.99045 -30.73329 -29.73657 -27.94936 -26.62120 -26.09103 -24.03943 -24.00274 -22.18263 -21.85823 -20.95101 -20.20064 -19.61051 -17.96115 -17.81142 -17.67365 -16.95309 -16.31766 -15.95090 -15.80808 -15.47662 -15.37606 -14.68310 -14.55042 -14.35243 -14.22547 -13.98272 -13.63239 -13.57064 -13.24859 -13.18140 -13.02523 -12.72938 -12.62161 -12.45173 -12.21704 -12.09216 -11.97363 -11.92644 -11.74594 -11.44746 -11.28254 -10.94286 -10.81396 -10.52964 -10.42246 -10.21426 -10.14579 -10.09960 -9.81383 -9.75583 -9.26403 -9.16199 -8.59263 -8.23950 -7.05707 -5.90108 -3.14227 0.53242 1.62211 2.15068 2.32564 2.94076 3.43334 3.44985 3.55053 3.57876 4.13371 4.23356 4.34552 4.42456 4.61000 4.64712 4.71764 4.73601 4.90106 4.92243 4.94183 5.00253 5.09482 5.16391 5.21714 5.26350 5.38068 5.46369 5.47641 5.51158 5.64251 5.73756 5.75809 5.79439 5.84424 5.93920 6.05069 6.07657 6.09038 6.12785 6.21300 6.22636 6.28172 6.39826 6.51461 6.65693 6.77747 6.82425 6.86017 7.20976 7.72203 7.81633 7.94190 8.34756 8.88079 9.75172 10.22712 11.25899 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002407 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.749095 B =11628.561026 C =13068.261503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.014 3.986 3 C -0.229 4.229 4 C 0.143 3.857 5 N -0.483 5.483 6 C 0.071 3.929 7 C 0.497 3.503 8 O -0.524 6.524 9 N -0.723 5.723 10 C 0.115 3.885 11 C -0.116 4.116 12 C -0.093 4.093 13 H 0.077 0.923 14 C 0.121 3.879 15 N -0.611 5.611 16 C -0.243 4.243 17 H 0.094 0.906 18 C 0.021 3.979 19 N -0.905 5.905 20 Si 0.883 3.117 21 H -0.286 1.286 22 H -0.281 1.281 23 H -0.304 1.304 24 C 0.139 3.861 25 C -0.101 4.101 26 H 0.078 0.922 27 C -0.137 4.137 28 C 0.521 3.479 29 O -0.548 6.548 30 C -0.246 4.246 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.401 0.599 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.026 0.974 44 H 0.041 0.959 45 H 0.263 0.737 46 H 0.048 0.952 47 H 0.023 0.977 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.054 0.946 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 19.779 20.949 31.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.252 4.252 4 C 0.016 3.984 5 N -0.194 5.194 6 C -0.055 4.055 7 C 0.281 3.719 8 O -0.399 6.399 9 N -0.375 5.375 10 C -0.008 4.008 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.095 0.905 14 C -0.004 4.004 15 N -0.337 5.337 16 C -0.370 4.370 17 H 0.112 0.888 18 C -0.178 4.178 19 N -0.549 5.549 20 Si 0.715 3.285 21 H -0.213 1.213 22 H -0.208 1.208 23 H -0.232 1.232 24 C 0.014 3.986 25 C -0.120 4.120 26 H 0.097 0.903 27 C -0.195 4.195 28 C 0.323 3.677 29 O -0.430 6.430 30 C -0.267 4.267 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.236 0.764 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.909 18.812 20.152 30.440 hybrid contribution -0.809 0.311 0.101 0.873 sum -13.717 19.123 20.253 31.049 Atomic orbital electron populations 1.20927 0.90317 1.03669 1.03025 1.20210 0.96817 0.92646 0.89320 1.20518 0.92339 0.98930 1.13403 1.21861 0.93632 0.89393 0.93483 1.45033 1.07079 1.07353 1.59923 1.21789 0.79984 1.07354 0.96338 1.20681 0.83027 0.77061 0.91171 1.90786 1.55176 1.48252 1.45714 1.45926 1.06431 1.75347 1.09796 1.21545 0.94609 1.03031 0.81603 1.21779 0.93115 1.02692 0.97863 1.22166 0.96099 0.98648 0.94349 0.90511 1.21752 0.91112 0.93661 0.93839 1.44802 1.17217 1.18074 1.53627 1.18648 0.97004 0.94049 1.27284 0.88794 1.24790 0.97485 0.95037 1.00475 1.69892 1.31771 1.01319 1.51909 0.87034 0.86778 0.77377 0.77358 1.21299 1.20850 1.23233 1.21635 0.94388 0.89213 0.93413 1.22371 0.94462 0.95624 0.99561 0.90331 1.21688 1.01086 0.95536 1.01152 1.17116 0.89417 0.82428 0.78702 1.90984 1.69072 1.30221 1.52674 1.21939 0.92209 0.99665 1.12900 0.90115 0.90742 0.90755 0.83717 0.82215 0.85136 0.86024 0.76439 0.91266 0.90851 0.90722 0.91182 0.95663 0.94150 0.92759 0.93397 0.95873 0.92750 0.93101 0.92683 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.03 36.01 0.36 -0.29 16 2 C 0.01 0.11 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.59 9.71 -39.88 -0.39 -1.98 16 4 C 0.14 1.05 10.28 -16.84 -0.17 0.88 16 5 N -0.48 -5.11 2.07 -121.06 -0.25 -5.36 16 6 C 0.07 0.61 5.82 -5.19 -0.03 0.58 16 7 C 0.50 6.25 7.90 -10.99 -0.09 6.17 16 8 O -0.52 -9.29 16.43 5.55 0.09 -9.20 16 9 N -0.72 -7.74 5.56 -60.29 -0.33 -8.08 16 10 C 0.12 1.57 5.56 -4.04 -0.02 1.54 16 11 C -0.12 -1.43 4.73 -26.73 -0.13 -1.56 16 12 C -0.09 -1.49 2.39 -88.78 -0.21 -1.70 16 13 H 0.08 1.18 8.01 -51.93 -0.42 0.77 16 14 C 0.12 2.69 3.94 -3.06 -0.01 2.68 16 15 N -0.61 -15.13 3.28 -170.06 -0.56 -15.69 16 16 C -0.24 -7.11 10.57 -15.06 -0.16 -7.27 16 17 H 0.09 2.87 8.06 -52.49 -0.42 2.44 16 18 C 0.02 0.62 5.43 -17.43 -0.09 0.53 16 19 N -0.90 -28.92 13.97 55.49 0.78 -28.14 16 20 Si 0.88 24.22 24.29 -169.99 -4.13 20.09 16 21 H -0.29 -7.71 6.72 56.52 0.38 -7.33 16 22 H -0.28 -7.60 6.74 56.52 0.38 -7.22 16 23 H -0.30 -8.46 7.11 56.52 0.40 -8.06 16 24 C 0.14 2.72 6.70 -2.53 -0.02 2.71 16 25 C -0.10 -1.52 3.09 -88.47 -0.27 -1.79 16 26 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 27 C -0.14 -1.58 9.30 37.16 0.35 -1.23 16 28 C 0.52 7.33 7.40 -15.44 -0.11 7.22 16 29 O -0.55 -9.92 16.64 4.86 0.08 -9.84 16 30 C -0.25 -2.81 9.65 -39.38 -0.38 -3.19 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 33 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.16 0.56 8.03 -52.49 -0.42 0.14 16 36 H 0.13 1.13 7.39 -51.93 -0.38 0.75 16 37 H 0.12 0.40 8.01 -51.93 -0.42 -0.01 16 38 H 0.40 2.75 8.47 -40.82 -0.35 2.40 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 41 H 0.07 0.95 7.94 -51.92 -0.41 0.54 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.63 3.73 -51.93 -0.19 0.44 16 44 H 0.04 0.95 7.38 -51.93 -0.38 0.57 16 45 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.02 0.45 8.04 -51.93 -0.42 0.04 16 48 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 409.56 15.07 6.17 6.17 Total: -1.00 -41.10 409.56 -8.60 -49.70 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.45 Total: -2.45 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.00 Total: 2.78 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.37 Total: -57.26 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.17 Total: -19.03 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -4.13 Total: 20.09 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -41.10 -8.60 -49.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103481853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.922 kcal (2) G-P(sol) polarization free energy of solvation -41.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds