Wall clock time and date at job start Wed Apr 1 2020 05:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40199 * 120.36992 * 2 1 4 4 C 1.35346 * 119.95135 * 179.76542 * 3 2 1 5 5 N 1.35763 * 120.70107 * 0.51442 * 4 3 2 6 6 C 1.46496 * 119.62745 * 179.76334 * 5 4 3 7 7 C 1.50703 * 109.46880 * 269.72406 * 6 5 4 8 8 O 1.21287 * 119.99750 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00089 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00059 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47361 * 179.97438 * 11 10 9 13 13 H 1.08995 * 110.64134 * 51.86079 * 12 11 10 14 14 C 1.54340 * 110.84892 * 288.69215 * 12 11 10 15 15 N 1.47022 * 107.26661 * 219.67266 * 14 12 11 16 16 C 1.36935 * 125.64921 * 178.85725 * 15 14 12 17 17 H 1.08001 * 119.99955 * 191.19127 * 16 15 14 18 18 C 1.38811 * 119.99853 * 11.18200 * 16 15 14 19 19 N 1.31621 * 120.00295 * 206.17070 * 18 16 15 20 20 Si 1.86803 * 119.99841 * 26.17539 * 18 16 15 21 21 H 1.48497 * 109.47088 * 275.72957 * 20 18 16 22 22 H 1.48499 * 109.47011 * 35.73234 * 20 18 16 23 23 H 1.48502 * 109.46918 * 155.73052 * 20 18 16 24 24 C 1.47426 * 108.69923 * 358.58709 * 15 14 12 25 25 C 1.54908 * 104.83480 * 24.35526 * 24 15 14 26 26 H 1.08998 * 111.00265 * 81.06412 * 25 24 15 27 27 C 1.53006 * 111.00222 * 204.87534 * 25 24 15 28 28 C 1.34667 * 120.74808 * 359.47900 * 5 4 3 29 29 O 1.22061 * 119.98239 * 180.28120 * 28 5 4 30 30 C 1.36402 * 120.36875 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47036 * 269.97648 * 1 2 3 32 32 H 1.08998 * 109.47040 * 29.98010 * 1 2 3 33 33 H 1.08996 * 109.46895 * 149.97901 * 1 2 3 34 34 H 1.07999 * 120.01743 * 0.04212 * 3 2 1 35 35 H 1.08000 * 119.65102 * 180.27103 * 4 3 2 36 36 H 1.08995 * 109.47650 * 149.72189 * 6 5 4 37 37 H 1.09005 * 109.47002 * 29.72100 * 6 5 4 38 38 H 0.97000 * 120.00051 * 359.97438 * 9 7 6 39 39 H 1.09005 * 109.47557 * 59.99924 * 10 9 7 40 40 H 1.09005 * 109.47129 * 299.99800 * 10 9 7 41 41 H 1.09008 * 109.47140 * 60.00237 * 11 10 9 42 42 H 1.08996 * 109.47309 * 300.00018 * 11 10 9 43 43 H 1.09004 * 109.98713 * 100.19885 * 14 12 11 44 44 H 1.08999 * 109.77698 * 339.03233 * 14 12 11 45 45 H 0.96991 * 120.00246 * 180.02562 * 19 18 16 46 46 H 1.09006 * 110.36309 * 143.20052 * 24 15 14 47 47 H 1.09004 * 110.36674 * 265.51272 * 24 15 14 48 48 H 1.08991 * 109.46861 * 58.54923 * 27 25 24 49 49 H 1.09000 * 109.46110 * 178.54964 * 27 25 24 50 50 H 1.09000 * 109.47063 * 298.54538 * 27 25 24 51 51 H 1.08003 * 120.34471 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.2096 0.0000 4 6 3.5693 1.1997 0.0048 5 7 4.2539 0.0274 -0.0008 6 6 5.7188 0.0442 -0.0007 7 6 6.2211 0.0499 -1.4215 8 8 5.4330 0.0404 -2.3434 9 7 7.5461 0.0656 -1.6678 10 6 8.0345 0.0707 -3.0489 11 6 9.5643 0.0896 -3.0489 12 6 10.0744 0.0942 -4.4914 13 1 9.5987 0.8900 -5.0646 14 6 9.8387 -1.2758 -5.1618 15 7 11.0243 -1.5714 -5.9794 16 6 11.2205 -2.7066 -6.7196 17 1 12.1929 -2.9153 -7.1408 18 6 10.1698 -3.5893 -6.9284 19 7 10.4150 -4.8615 -7.1599 20 14 8.4075 -2.9714 -6.8810 21 1 7.9325 -2.9375 -5.4745 22 1 8.3468 -1.6040 -7.4572 23 1 7.5424 -3.8815 -7.6739 24 6 11.9640 -0.4402 -5.8755 25 6 11.6186 0.2398 -4.5271 26 1 12.0803 -0.2891 -3.6934 27 6 12.0315 1.7130 -4.5343 28 6 3.6017 -1.1508 -0.0008 29 8 4.2313 -2.1965 -0.0007 30 6 2.1966 -1.1769 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6822 2.1485 0.0007 35 1 4.1104 2.1344 0.0092 36 1 6.0923 -0.8415 0.5131 37 1 6.0718 0.9383 0.5131 38 1 8.1764 0.0736 -0.9305 39 1 7.6605 0.9560 -3.5634 40 1 7.6818 -0.8239 -3.5623 41 1 9.9387 -0.7955 -2.5344 42 1 9.9166 0.9844 -2.5358 43 1 8.9527 -1.2331 -5.7954 44 1 9.7142 -2.0436 -4.3981 45 1 9.6808 -5.4782 -7.3062 46 1 12.9925 -0.8012 -5.8660 47 1 11.8130 0.2555 -6.7009 48 1 11.5242 2.2285 -5.3497 49 1 11.7543 2.1725 -3.5856 50 1 13.1101 1.7874 -4.6727 51 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103481853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:52 Heat of formation + Delta-G solvation = -44.748018 kcal Electronic energy + Delta-G solvation = -30370.781218 eV Core-core repulsion = 26269.994018 eV Total energy + Delta-G solvation = -4100.787200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.55991 -40.70851 -39.96897 -38.15650 -36.72798 -36.18824 -35.16087 -33.26776 -32.66171 -31.42396 -30.53581 -29.08332 -27.90603 -27.45655 -25.41327 -24.69142 -23.63631 -22.75649 -21.98318 -21.65406 -20.88975 -19.05208 -18.78742 -18.57089 -18.48564 -17.57343 -17.08666 -16.87959 -16.71934 -16.30464 -16.26803 -15.56705 -15.43325 -15.20626 -15.05332 -14.87661 -14.80543 -14.57816 -14.25821 -14.19362 -13.78848 -13.58139 -13.50929 -13.37520 -13.17964 -13.04693 -12.95731 -12.91733 -12.74014 -12.68864 -12.50112 -12.18798 -12.15310 -11.77245 -11.59368 -11.51395 -11.27360 -11.14553 -11.05650 -10.82876 -10.61843 -10.27153 -9.17891 -9.02621 -8.27509 -5.45067 -0.15693 0.88265 1.18857 1.25199 1.32762 1.36638 1.44264 2.09134 2.30245 2.65615 2.92924 3.31309 3.53077 3.55936 3.63759 3.71509 3.75033 3.85504 3.88133 4.04832 4.11609 4.14683 4.19271 4.31063 4.36606 4.37596 4.47089 4.53400 4.66022 4.70778 4.75857 4.80030 4.82823 4.86331 4.87516 4.94129 5.06108 5.07297 5.13370 5.19931 5.21478 5.28199 5.30218 5.43069 5.45910 5.57018 5.63450 5.64088 6.01272 6.01565 6.37150 6.70064 6.92620 7.07574 7.49470 8.05383 8.92233 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002407 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.749095 B =11628.561026 C =13068.261503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.034 3.966 3 C -0.232 4.232 4 C 0.142 3.858 5 N -0.485 5.485 6 C 0.074 3.926 7 C 0.492 3.508 8 O -0.584 6.584 9 N -0.706 5.706 10 C 0.119 3.881 11 C -0.102 4.102 12 C -0.083 4.083 13 H 0.089 0.911 14 C 0.114 3.886 15 N -0.631 5.631 16 C -0.228 4.228 17 H 0.071 0.929 18 C -0.034 4.034 19 N -0.949 5.949 20 Si 0.940 3.060 21 H -0.289 1.289 22 H -0.276 1.276 23 H -0.311 1.311 24 C 0.127 3.873 25 C -0.084 4.084 26 H 0.085 0.915 27 C -0.129 4.129 28 C 0.500 3.500 29 O -0.615 6.615 30 C -0.298 4.298 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.185 0.815 35 H 0.210 0.790 36 H 0.126 0.874 37 H 0.188 0.812 38 H 0.424 0.576 39 H 0.073 0.927 40 H 0.021 0.979 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.001 0.999 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.045 0.955 47 H 0.030 0.970 48 H 0.054 0.946 49 H 0.083 0.917 50 H 0.064 0.936 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 25.489 23.746 37.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.030 3.970 3 C -0.254 4.254 4 C 0.017 3.983 5 N -0.194 5.194 6 C -0.051 4.051 7 C 0.278 3.722 8 O -0.463 6.463 9 N -0.359 5.359 10 C -0.005 4.005 11 C -0.140 4.140 12 C -0.103 4.103 13 H 0.107 0.893 14 C -0.010 4.010 15 N -0.357 5.357 16 C -0.356 4.356 17 H 0.089 0.911 18 C -0.229 4.229 19 N -0.596 5.596 20 Si 0.772 3.228 21 H -0.217 1.217 22 H -0.203 1.203 23 H -0.240 1.240 24 C 0.002 3.998 25 C -0.103 4.103 26 H 0.104 0.896 27 C -0.187 4.187 28 C 0.305 3.695 29 O -0.503 6.503 30 C -0.319 4.319 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.203 0.797 35 H 0.227 0.773 36 H 0.144 0.856 37 H 0.205 0.795 38 H 0.262 0.738 39 H 0.091 0.909 40 H 0.039 0.961 41 H 0.090 0.910 42 H 0.139 0.861 43 H 0.019 0.981 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.083 0.917 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.046 24.624 23.000 36.133 hybrid contribution -0.709 -1.346 -0.784 1.712 sum -13.756 23.278 22.216 34.995 Atomic orbital electron populations 1.21045 0.88046 1.04470 1.04425 1.20665 0.98532 0.92153 0.85641 1.21092 0.92615 0.99678 1.12021 1.22776 0.94384 0.89681 0.91497 1.45092 1.08128 1.07428 1.58719 1.22067 0.78942 1.10285 0.93764 1.21432 0.82948 0.75577 0.92291 1.90761 1.56680 1.51043 1.47843 1.45730 1.06536 1.74202 1.09432 1.21329 0.95645 1.00725 0.82821 1.21704 0.91675 1.05011 0.95618 1.22169 0.97274 0.94622 0.96207 0.89312 1.21856 0.89222 0.97129 0.92821 1.45020 1.19241 1.18384 1.53091 1.18705 0.95795 0.95318 1.25809 0.91138 1.25300 1.00401 0.95235 1.01972 1.69981 1.32442 1.02325 1.54899 0.86107 0.83099 0.76717 0.76874 1.21675 1.20250 1.23996 1.21976 0.93138 0.87969 0.96669 1.22319 0.93324 0.98050 0.96610 0.89641 1.21660 1.01780 0.92195 1.03034 1.17535 0.90354 0.82823 0.78763 1.90918 1.70288 1.32488 1.56653 1.21887 0.91691 1.00836 1.17507 0.88181 0.88591 0.91291 0.79745 0.77349 0.85580 0.79462 0.73803 0.90866 0.96079 0.91040 0.86067 0.98148 0.96382 0.92992 0.93646 0.95207 0.92684 0.89851 0.91682 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.03 71.24 0.71 -0.34 16 2 C 0.03 0.53 5.89 -19.82 -0.12 0.41 16 3 C -0.23 -2.40 9.71 22.08 0.21 -2.18 16 4 C 0.14 1.57 10.28 83.42 0.86 2.43 16 5 N -0.48 -9.62 2.07 -655.06 -1.36 -10.98 16 6 C 0.07 1.09 5.82 85.63 0.50 1.59 16 7 C 0.49 11.71 7.90 87.66 0.69 12.41 16 8 O -0.58 -20.85 16.43 -3.05 -0.05 -20.90 16 9 N -0.71 -13.47 5.56 -463.05 -2.57 -16.04 16 10 C 0.12 3.06 5.56 86.38 0.48 3.54 16 11 C -0.10 -2.16 4.73 30.59 0.14 -2.01 16 12 C -0.08 -2.44 2.39 -9.60 -0.02 -2.46 16 13 H 0.09 2.44 8.01 -2.39 -0.02 2.42 16 14 C 0.11 5.11 3.94 86.73 0.34 5.45 16 15 N -0.63 -31.54 3.28 -691.94 -2.27 -33.81 16 16 C -0.23 -13.73 10.57 84.03 0.89 -12.84 16 17 H 0.07 4.49 8.06 -2.91 -0.02 4.47 16 18 C -0.03 -2.17 5.43 84.86 0.46 -1.71 16 19 N -0.95 -63.28 13.97 21.65 0.30 -62.97 16 20 Si 0.94 52.76 24.29 68.60 1.67 54.42 16 21 H -0.29 -16.16 6.72 99.48 0.67 -15.49 16 22 H -0.28 -14.96 6.74 99.48 0.67 -14.29 16 23 H -0.31 -17.59 7.11 99.48 0.71 -16.88 16 24 C 0.13 4.79 6.70 86.85 0.58 5.37 16 25 C -0.08 -2.23 3.09 -9.40 -0.03 -2.26 16 26 H 0.09 2.20 8.05 -2.39 -0.02 2.18 16 27 C -0.13 -2.27 9.30 71.98 0.67 -1.61 16 28 C 0.50 14.87 7.40 84.82 0.63 15.50 16 29 O -0.62 -24.37 16.64 -5.52 -0.09 -24.46 16 30 C -0.30 -7.30 9.65 22.40 0.22 -7.08 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.45 8.10 -2.39 -0.02 0.43 16 33 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 34 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 35 H 0.21 0.15 8.03 -2.91 -0.02 0.13 16 36 H 0.13 2.07 7.39 -2.39 -0.02 2.05 16 37 H 0.19 0.17 8.01 -2.38 -0.02 0.15 16 38 H 0.42 4.17 8.47 -92.71 -0.79 3.38 16 39 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.02 0.76 7.68 -2.38 -0.02 0.74 16 41 H 0.07 1.61 7.94 -2.38 -0.02 1.59 16 42 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.00 0.05 3.73 -2.38 -0.01 0.05 16 44 H 0.02 0.88 7.38 -2.39 -0.02 0.86 16 45 H 0.26 16.68 8.31 -92.71 -0.77 15.91 16 46 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 48 H 0.05 1.00 8.11 -2.39 -0.02 0.98 16 49 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -101.83 409.56 2.91 -98.92 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 0.06 Total: 1.65 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 7.22 Total: 14.18 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.90 Total: -123.80 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.14 Total: -45.37 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 1.67 Total: 54.42 kcal Total: -101.83 2.91 -98.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103481853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.170 kcal (2) G-P(sol) polarization free energy of solvation -101.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds