Wall clock time and date at job start Wed Apr 1 2020 04:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37997 * 120.81846 * 2 1 4 4 C 1.39123 * 119.26165 * 180.27940 * 3 2 1 5 5 O 1.35505 * 119.52263 * 179.72539 * 4 3 2 6 6 N 1.32433 * 120.95427 * 359.69562 * 4 3 2 7 7 C 1.31638 * 121.79549 * 0.02674 * 6 4 3 8 8 C 1.50700 * 119.68413 * 179.97438 * 7 6 4 9 9 C 1.39566 * 120.62731 * 359.97438 * 7 6 4 10 10 C 1.47616 * 120.49858 * 179.97438 * 9 7 6 11 11 O 1.21583 * 119.99798 * 90.00738 * 10 9 7 12 12 N 1.34776 * 120.00035 * 270.00546 * 10 9 7 13 13 C 1.46508 * 119.99579 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46707 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47125 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.63496 * 51.85936 * 15 14 13 17 17 C 1.54335 * 111.00070 * 288.78390 * 15 14 13 18 18 N 1.47022 * 107.26195 * 219.59791 * 17 15 14 19 19 C 1.36935 * 125.64427 * 178.84992 * 18 17 15 20 20 H 1.08000 * 120.00518 * 359.44761 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.71412 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46676 * 90.00727 * 23 21 19 25 25 H 1.48502 * 109.46977 * 210.00025 * 23 21 19 26 26 H 1.48494 * 109.47494 * 330.00753 * 23 21 19 27 27 C 1.47426 * 108.70625 * 358.58545 * 18 17 15 28 28 C 1.54912 * 104.82994 * 24.35934 * 27 18 17 29 29 H 1.08995 * 111.00742 * 81.05954 * 28 27 18 30 30 C 1.52998 * 111.00086 * 204.87731 * 28 27 18 31 31 H 1.09001 * 109.46865 * 270.26928 * 1 2 3 32 32 H 1.09001 * 109.47720 * 30.27084 * 1 2 3 33 33 H 1.09006 * 109.47433 * 150.27250 * 1 2 3 34 34 H 1.08003 * 120.37215 * 359.97438 * 3 2 1 35 35 H 0.96703 * 113.99564 * 269.97144 * 5 4 3 36 36 H 1.09000 * 109.47093 * 270.02129 * 8 7 6 37 37 H 1.09000 * 109.47287 * 30.01837 * 8 7 6 38 38 H 1.08995 * 109.47112 * 150.02366 * 8 7 6 39 39 H 0.96996 * 120.00291 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46669 * 60.00382 * 13 12 10 41 41 H 1.08993 * 109.46871 * 299.99995 * 13 12 10 42 42 H 1.09009 * 109.47210 * 60.00549 * 14 13 12 43 43 H 1.09003 * 109.47538 * 300.00244 * 14 13 12 44 44 H 1.09007 * 109.99076 * 100.12594 * 17 15 14 45 45 H 1.09002 * 109.78210 * 338.95588 * 17 15 14 46 46 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36404 * 143.19245 * 27 18 17 48 48 H 1.08995 * 110.36566 * 265.51629 * 27 18 17 49 49 H 1.08996 * 109.47303 * 58.54471 * 30 28 27 50 50 H 1.09006 * 109.46537 * 178.54319 * 30 28 27 51 51 H 1.08996 * 109.47165 * 298.54472 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0059 5 8 4.3042 2.3079 -0.0116 6 7 4.2548 -0.0065 -0.0055 7 6 3.6205 -1.1600 0.0000 8 6 4.4081 -2.4448 -0.0004 9 6 2.2255 -1.2043 0.0061 10 6 1.5172 -2.4994 0.0117 11 8 1.2299 -3.0306 1.0669 12 7 1.1888 -3.0929 -1.1530 13 6 0.4863 -4.3785 -1.1474 14 6 0.2347 -4.8284 -2.5879 15 6 -0.4984 -6.1714 -2.5821 16 1 -1.3835 -6.1231 -1.9478 17 6 0.4362 -7.3097 -2.1210 18 7 0.1423 -8.4817 -2.9586 19 6 0.7728 -9.6949 -2.8830 20 1 1.5664 -9.8474 -2.1664 21 6 0.3957 -10.7272 -3.7311 22 7 -0.5674 -10.5397 -4.6082 23 14 1.2563 -12.3820 -3.6283 24 1 0.5431 -13.2514 -2.6583 25 1 1.2521 -13.0260 -4.9664 26 1 2.6576 -12.1842 -3.1785 27 6 -0.9478 -8.1365 -3.8891 28 6 -0.8796 -6.5949 -4.0253 29 1 -0.1079 -6.2992 -4.7359 30 6 -2.2394 -6.0191 -4.4256 31 1 -0.3633 0.0048 1.0277 32 1 -0.3634 0.8875 -0.5180 33 1 -0.3634 -0.8924 -0.5096 34 1 1.6935 2.1315 -0.0004 35 1 4.5037 2.6424 -0.8967 36 1 4.5939 -2.7567 -1.0281 37 1 5.3588 -2.2883 0.5093 38 1 3.8413 -3.2185 0.5173 39 1 1.4183 -2.6693 -1.9948 40 1 -0.4666 -4.2695 -0.6295 41 1 1.0953 -5.1231 -0.6348 42 1 1.1875 -4.9373 -3.1062 43 1 -0.3745 -4.0836 -3.1001 44 1 0.2472 -7.5458 -1.0737 45 1 1.4758 -7.0103 -2.2540 46 1 -0.8306 -11.2608 -5.2010 47 1 -0.7846 -8.6104 -4.8571 48 1 -1.9098 -8.4387 -3.4752 49 1 -2.9840 -6.2923 -3.6780 50 1 -2.1696 -4.9331 -4.4889 51 1 -2.5333 -6.4215 -5.3950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103742640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:14 Heat of formation + Delta-G solvation = -33.711794 kcal Electronic energy + Delta-G solvation = -30308.691986 eV Core-core repulsion = 26208.383353 eV Total energy + Delta-G solvation = -4100.308633 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 57.13 seconds Orbital eigenvalues (eV) -41.33246 -39.60952 -38.20696 -37.53001 -35.32014 -34.75136 -33.30177 -32.32263 -31.03764 -30.66717 -28.52999 -28.28493 -26.82407 -25.67939 -24.49832 -23.62012 -22.06332 -21.75928 -21.01421 -19.75283 -19.28460 -18.86192 -17.94280 -17.62996 -16.87373 -16.36475 -15.97008 -15.58549 -14.95688 -14.82127 -14.56388 -14.32609 -14.09478 -13.78325 -13.75383 -13.63146 -13.53484 -13.17408 -12.99388 -12.83679 -12.68474 -12.52888 -12.30098 -12.11143 -12.06842 -12.02223 -11.68884 -11.51659 -11.15083 -11.05174 -10.85819 -10.76096 -10.47289 -10.11050 -9.99984 -9.92610 -9.86069 -9.78229 -9.72003 -9.33886 -9.23962 -9.22891 -8.63722 -6.80832 -5.63919 -3.05262 0.33113 0.68390 2.28869 2.77036 3.06715 3.20287 3.40631 3.45712 3.47425 4.00487 4.06246 4.36306 4.50115 4.57059 4.73024 4.83832 4.89940 5.04339 5.06278 5.09460 5.12837 5.25154 5.26756 5.43576 5.44615 5.50406 5.53953 5.54727 5.63137 5.68469 5.71874 5.74173 5.89614 5.94431 5.99577 6.10449 6.20219 6.24416 6.27578 6.32422 6.54678 6.60749 6.68510 6.82241 6.98049 7.01138 7.22879 7.43310 7.56051 7.65148 7.87971 7.92964 8.38263 9.24147 9.85160 10.50406 11.39796 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002025 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.389721 B =13825.567464 C =14743.493359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.012 3.988 3 C -0.197 4.197 4 C 0.332 3.668 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.197 3.803 8 C -0.116 4.116 9 C -0.193 4.193 10 C 0.570 3.430 11 O -0.525 6.525 12 N -0.719 5.719 13 C 0.116 3.884 14 C -0.116 4.116 15 C -0.092 4.092 16 H 0.072 0.928 17 C 0.140 3.860 18 N -0.606 5.606 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.158 3.842 28 C -0.115 4.115 29 H 0.068 0.932 30 C -0.133 4.133 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.403 0.597 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.401 0.599 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.251 0.749 47 H 0.105 0.895 48 H 0.011 0.989 49 H 0.050 0.950 50 H 0.042 0.958 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 26.117 3.599 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.004 3.996 3 C -0.218 4.218 4 C 0.154 3.846 5 O -0.288 6.288 6 N -0.227 5.227 7 C 0.059 3.941 8 C -0.173 4.173 9 C -0.198 4.198 10 C 0.354 3.646 11 O -0.401 6.401 12 N -0.370 5.370 13 C -0.007 4.007 14 C -0.154 4.154 15 C -0.112 4.112 16 H 0.091 0.909 17 C 0.014 3.986 18 N -0.331 5.331 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.033 3.967 28 C -0.134 4.134 29 H 0.086 0.914 30 C -0.191 4.191 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.164 0.836 35 H 0.262 0.738 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.235 0.765 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.062 0.938 47 H 0.122 0.878 48 H 0.029 0.971 49 H 0.069 0.931 50 H 0.061 0.939 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.616 25.517 4.867 26.227 hybrid contribution -0.248 -0.421 -0.708 0.860 sum 3.368 25.096 4.159 25.660 Atomic orbital electron populations 1.20951 0.89201 1.03941 1.03972 1.20213 0.96990 0.90838 0.91530 1.21877 0.93720 0.99374 1.06868 1.19263 0.87035 0.85060 0.93267 1.84738 1.76017 1.34021 1.34050 1.67014 1.41829 0.97832 1.15989 1.21084 0.89134 0.93221 0.90710 1.20911 1.00737 0.91576 1.04052 1.20720 0.94889 0.94375 1.09818 1.17857 0.78533 0.83855 0.84325 1.90856 1.53626 1.64690 1.30924 1.46146 1.59301 1.23427 1.08135 1.21590 0.97073 0.83560 0.98454 1.21792 1.01315 0.97764 0.94547 1.22148 0.98232 0.92684 0.98124 0.90934 1.21373 0.95662 0.87514 0.94100 1.44505 1.40642 1.08784 1.39199 1.19087 1.13073 0.87142 1.15589 0.90551 1.24785 0.98902 0.98373 0.98755 1.69801 1.31588 1.31424 1.24349 0.86084 0.78869 0.83772 0.76859 1.21658 1.21687 1.20715 1.21968 0.89682 0.87346 0.97658 1.22628 0.96216 1.00068 0.94517 0.91396 1.21632 0.97148 0.99029 1.01267 0.89457 0.90113 0.90541 0.83553 0.73823 0.89293 0.89475 0.89861 0.76491 0.91247 0.90662 0.91118 0.91560 0.96274 0.95988 0.93799 0.87765 0.97086 0.93082 0.93903 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.68 36.01 0.35 -0.48 16 2 C 0.01 0.11 5.95 -103.96 -0.62 -0.51 16 3 C -0.20 -1.53 9.73 -39.34 -0.38 -1.91 16 4 C 0.33 3.10 7.74 -16.96 -0.13 2.97 16 5 O -0.48 -3.62 13.55 -18.21 -0.25 -3.86 16 6 N -0.51 -5.63 10.28 -9.20 -0.09 -5.72 16 7 C 0.20 2.11 6.82 -82.18 -0.56 1.55 16 8 C -0.12 -1.08 9.78 36.01 0.35 -0.73 16 9 C -0.19 -2.01 5.65 -104.82 -0.59 -2.60 16 10 C 0.57 6.73 4.33 -12.43 -0.05 6.68 16 11 O -0.53 -8.31 17.10 5.29 0.09 -8.22 16 12 N -0.72 -7.06 5.55 -61.32 -0.34 -7.40 16 13 C 0.12 1.34 5.56 -4.04 -0.02 1.32 16 14 C -0.12 -1.36 4.74 -26.73 -0.13 -1.49 16 15 C -0.09 -1.47 2.38 -88.77 -0.21 -1.68 16 16 H 0.07 1.14 8.02 -51.93 -0.42 0.73 16 17 C 0.14 2.83 6.25 -3.06 -0.02 2.81 16 18 N -0.61 -15.41 3.39 -170.06 -0.58 -15.98 16 19 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 22 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 23 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.16 3.76 5.36 -2.53 -0.01 3.75 16 28 C -0.11 -2.02 3.09 -88.47 -0.27 -2.30 16 29 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 30 C -0.13 -1.95 9.30 37.16 0.35 -1.60 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 33 H 0.08 0.56 7.19 -51.93 -0.37 0.18 16 34 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.40 0.90 9.06 45.56 0.41 1.31 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.86 7.06 -51.93 -0.37 0.50 16 39 H 0.40 2.98 8.46 -40.82 -0.35 2.63 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 42 H 0.07 0.84 7.95 -51.92 -0.41 0.43 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 45 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.10 2.81 5.87 -51.93 -0.31 2.51 16 48 H 0.01 0.28 8.04 -51.93 -0.42 -0.13 16 49 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 50 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 413.58 15.07 6.23 6.23 Total: -1.00 -34.95 413.58 -9.24 -44.19 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.63 Total: 0.95 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.21 Total: -1.02 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.45 Total: -55.38 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.16 Total: -12.09 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.95 -9.24 -44.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103742640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.482 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 57.13 seconds