Wall clock time and date at job start Wed Apr 1 2020 04:38:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.37997 * 120.81846 * 2 1
4 4 C 1.39123 * 119.26165 * 180.27940 * 3 2 1
5 5 O 1.35505 * 119.52263 * 179.72539 * 4 3 2
6 6 N 1.32433 * 120.95427 * 359.69562 * 4 3 2
7 7 C 1.31638 * 121.79549 * 0.02674 * 6 4 3
8 8 C 1.50700 * 119.68413 * 179.97438 * 7 6 4
9 9 C 1.39566 * 120.62731 * 359.97438 * 7 6 4
10 10 C 1.47616 * 120.49858 * 179.97438 * 9 7 6
11 11 O 1.21583 * 119.99798 * 90.00738 * 10 9 7
12 12 N 1.34776 * 120.00035 * 270.00546 * 10 9 7
13 13 C 1.46508 * 119.99579 * 179.97438 * 12 10 9
14 14 C 1.52996 * 109.46707 * 179.97438 * 13 12 10
15 15 C 1.53004 * 109.47125 * 179.97438 * 14 13 12
16 16 H 1.09000 * 110.63496 * 51.85936 * 15 14 13
17 17 C 1.54335 * 111.00070 * 288.78390 * 15 14 13
18 18 N 1.47022 * 107.26195 * 219.59791 * 17 15 14
19 19 C 1.36935 * 125.64427 * 178.84992 * 18 17 15
20 20 H 1.08000 * 120.00518 * 359.44761 * 19 18 17
21 21 C 1.38817 * 119.99990 * 179.71412 * 19 18 17
22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18
24 24 H 1.48508 * 109.46676 * 90.00727 * 23 21 19
25 25 H 1.48502 * 109.46977 * 210.00025 * 23 21 19
26 26 H 1.48494 * 109.47494 * 330.00753 * 23 21 19
27 27 C 1.47426 * 108.70625 * 358.58545 * 18 17 15
28 28 C 1.54912 * 104.82994 * 24.35934 * 27 18 17
29 29 H 1.08995 * 111.00742 * 81.05954 * 28 27 18
30 30 C 1.52998 * 111.00086 * 204.87731 * 28 27 18
31 31 H 1.09001 * 109.46865 * 270.26928 * 1 2 3
32 32 H 1.09001 * 109.47720 * 30.27084 * 1 2 3
33 33 H 1.09006 * 109.47433 * 150.27250 * 1 2 3
34 34 H 1.08003 * 120.37215 * 359.97438 * 3 2 1
35 35 H 0.96703 * 113.99564 * 269.97144 * 5 4 3
36 36 H 1.09000 * 109.47093 * 270.02129 * 8 7 6
37 37 H 1.09000 * 109.47287 * 30.01837 * 8 7 6
38 38 H 1.08995 * 109.47112 * 150.02366 * 8 7 6
39 39 H 0.96996 * 120.00291 * 0.02562 * 12 10 9
40 40 H 1.09000 * 109.46669 * 60.00382 * 13 12 10
41 41 H 1.08993 * 109.46871 * 299.99995 * 13 12 10
42 42 H 1.09009 * 109.47210 * 60.00549 * 14 13 12
43 43 H 1.09003 * 109.47538 * 300.00244 * 14 13 12
44 44 H 1.09007 * 109.99076 * 100.12594 * 17 15 14
45 45 H 1.09002 * 109.78210 * 338.95588 * 17 15 14
46 46 H 0.96996 * 119.99743 * 179.97438 * 22 21 19
47 47 H 1.08998 * 110.36404 * 143.19245 * 27 18 17
48 48 H 1.08995 * 110.36566 * 265.51629 * 27 18 17
49 49 H 1.08996 * 109.47303 * 58.54471 * 30 28 27
50 50 H 1.09006 * 109.46537 * 178.54319 * 30 28 27
51 51 H 1.08996 * 109.47165 * 298.54472 * 30 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2140 1.1851 0.0000
4 6 3.6047 1.1473 -0.0059
5 8 4.3042 2.3079 -0.0116
6 7 4.2548 -0.0065 -0.0055
7 6 3.6205 -1.1600 0.0000
8 6 4.4081 -2.4448 -0.0004
9 6 2.2255 -1.2043 0.0061
10 6 1.5172 -2.4994 0.0117
11 8 1.2299 -3.0306 1.0669
12 7 1.1888 -3.0929 -1.1530
13 6 0.4863 -4.3785 -1.1474
14 6 0.2347 -4.8284 -2.5879
15 6 -0.4984 -6.1714 -2.5821
16 1 -1.3835 -6.1231 -1.9478
17 6 0.4362 -7.3097 -2.1210
18 7 0.1423 -8.4817 -2.9586
19 6 0.7728 -9.6949 -2.8830
20 1 1.5664 -9.8474 -2.1664
21 6 0.3957 -10.7272 -3.7311
22 7 -0.5674 -10.5397 -4.6082
23 14 1.2563 -12.3820 -3.6283
24 1 0.5431 -13.2514 -2.6583
25 1 1.2521 -13.0260 -4.9664
26 1 2.6576 -12.1842 -3.1785
27 6 -0.9478 -8.1365 -3.8891
28 6 -0.8796 -6.5949 -4.0253
29 1 -0.1079 -6.2992 -4.7359
30 6 -2.2394 -6.0191 -4.4256
31 1 -0.3633 0.0048 1.0277
32 1 -0.3634 0.8875 -0.5180
33 1 -0.3634 -0.8924 -0.5096
34 1 1.6935 2.1315 -0.0004
35 1 4.5037 2.6424 -0.8967
36 1 4.5939 -2.7567 -1.0281
37 1 5.3588 -2.2883 0.5093
38 1 3.8413 -3.2185 0.5173
39 1 1.4183 -2.6693 -1.9948
40 1 -0.4666 -4.2695 -0.6295
41 1 1.0953 -5.1231 -0.6348
42 1 1.1875 -4.9373 -3.1062
43 1 -0.3745 -4.0836 -3.1001
44 1 0.2472 -7.5458 -1.0737
45 1 1.4758 -7.0103 -2.2540
46 1 -0.8306 -11.2608 -5.2010
47 1 -0.7846 -8.6104 -4.8571
48 1 -1.9098 -8.4387 -3.4752
49 1 -2.9840 -6.2923 -3.6780
50 1 -2.1696 -4.9331 -4.4889
51 1 -2.5333 -6.4215 -5.3950
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001103742640.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:58
Heat of formation + Delta-G solvation = -60.487127 kcal
Electronic energy + Delta-G solvation = -30309.853052 eV
Core-core repulsion = 26208.383353 eV
Total energy + Delta-G solvation = -4101.469699 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-42.06026 -40.49794 -39.68190 -38.18625 -36.48313 -35.39833 -35.00044 -33.17584
-32.52350 -32.13539 -29.17913 -29.07360 -28.24802 -27.34121 -25.76530 -24.64430
-23.39663 -22.41506 -21.90267 -21.37078 -20.66294 -19.48091 -18.86653 -18.78803
-18.31046 -17.31108 -17.03402 -16.67701 -16.39525 -15.85100 -15.70645 -15.44650
-15.21184 -14.87684 -14.71520 -14.55290 -14.32334 -14.25372 -14.13149 -13.88021
-13.68120 -13.47962 -13.36785 -13.33966 -13.11844 -12.95305 -12.85015 -12.76808
-12.72306 -12.63128 -12.38822 -12.18419 -11.94619 -11.77654 -11.46973 -11.32904
-11.22961 -10.95040 -10.73384 -10.64844 -10.54793 -10.17007 -9.91814 -8.85908
-7.76532 -5.20698 -0.34733 0.03019 1.38658 1.45223 1.46971 1.55720
2.00018 2.35851 2.49466 2.55574 3.31925 3.36396 3.43861 3.60695
3.72785 3.76393 3.93207 3.96140 4.09370 4.17003 4.26709 4.30014
4.36299 4.39367 4.52525 4.54392 4.57055 4.63790 4.66079 4.75181
4.80509 4.82110 4.86146 4.96333 5.03416 5.04074 5.08289 5.11731
5.14439 5.21298 5.30041 5.37214 5.40044 5.43142 5.47852 5.57570
5.79042 5.87618 6.34014 6.41361 6.54350 6.78942 7.08235 7.12918
7.81259 8.44841 9.24616
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017557 B = 0.002025 C = 0.001899
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1594.389721 B =13825.567464 C =14743.493359
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.013 3.987
3 C -0.188 4.188
4 C 0.328 3.672
5 O -0.488 6.488
6 N -0.532 5.532
7 C 0.186 3.814
8 C -0.113 4.113
9 C -0.208 4.208
10 C 0.578 3.422
11 O -0.572 6.572
12 N -0.702 5.702
13 C 0.123 3.877
14 C -0.100 4.100
15 C -0.078 4.078
16 H 0.078 0.922
17 C 0.133 3.867
18 N -0.630 5.630
19 C -0.239 4.239
20 H 0.076 0.924
21 C -0.069 4.069
22 N -0.948 5.948
23 Si 0.978 3.022
24 H -0.288 1.288
25 H -0.291 1.291
26 H -0.270 1.270
27 C 0.159 3.841
28 C -0.100 4.100
29 H 0.072 0.928
30 C -0.127 4.127
31 H 0.084 0.916
32 H 0.109 0.891
33 H 0.070 0.930
34 H 0.177 0.823
35 H 0.425 0.575
36 H 0.102 0.898
37 H 0.087 0.913
38 H 0.068 0.932
39 H 0.416 0.584
40 H 0.068 0.932
41 H 0.053 0.947
42 H 0.074 0.926
43 H 0.100 0.900
44 H 0.011 0.989
45 H 0.027 0.973
46 H 0.246 0.754
47 H 0.068 0.932
48 H -0.019 1.019
49 H 0.047 0.953
50 H 0.082 0.918
51 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.903 29.150 3.080 29.455
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.005 3.995
3 C -0.209 4.209
4 C 0.149 3.851
5 O -0.299 6.299
6 N -0.253 5.253
7 C 0.047 3.953
8 C -0.170 4.170
9 C -0.213 4.213
10 C 0.363 3.637
11 O -0.451 6.451
12 N -0.353 5.353
13 C -0.001 4.001
14 C -0.138 4.138
15 C -0.097 4.097
16 H 0.096 0.904
17 C 0.008 3.992
18 N -0.356 5.356
19 C -0.368 4.368
20 H 0.094 0.906
21 C -0.261 4.261
22 N -0.598 5.598
23 Si 0.806 3.194
24 H -0.216 1.216
25 H -0.217 1.217
26 H -0.195 1.195
27 C 0.034 3.966
28 C -0.120 4.120
29 H 0.090 0.910
30 C -0.184 4.184
31 H 0.103 0.897
32 H 0.128 0.872
33 H 0.089 0.911
34 H 0.195 0.805
35 H 0.287 0.713
36 H 0.121 0.879
37 H 0.106 0.894
38 H 0.086 0.914
39 H 0.253 0.747
40 H 0.087 0.913
41 H 0.071 0.929
42 H 0.093 0.907
43 H 0.118 0.882
44 H 0.029 0.971
45 H 0.045 0.955
46 H 0.056 0.944
47 H 0.086 0.914
48 H -0.001 1.001
49 H 0.066 0.934
50 H 0.101 0.899
51 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 3.584 28.600 4.312 29.144
hybrid contribution -0.195 -1.306 -0.520 1.419
sum 3.388 27.294 3.791 27.764
Atomic orbital electron populations
1.21016 0.87714 1.05099 1.04120 1.20489 0.98045 0.90403 0.90592
1.22133 0.93075 1.00268 1.05416 1.19534 0.87864 0.85007 0.92670
1.84692 1.75916 1.33198 1.36118 1.67004 1.42640 0.98478 1.17201
1.21173 0.89420 0.93479 0.91197 1.20890 1.00417 0.90996 1.04724
1.20643 0.94853 0.94266 1.11543 1.18024 0.77767 0.84036 0.83876
1.90832 1.55660 1.65997 1.32616 1.45939 1.58355 1.22574 1.08479
1.21383 0.96759 0.83762 0.98150 1.21639 1.01538 0.95822 0.94807
1.22047 0.97836 0.93237 0.96594 0.90402 1.21592 0.97076 0.87528
0.93016 1.44862 1.40755 1.09454 1.40508 1.19443 1.13236 0.88667
1.15437 0.90568 1.25621 0.99915 1.01804 0.98767 1.70068 1.32811
1.31953 1.24932 0.85080 0.78273 0.79463 0.76539 1.21563 1.21737
1.19497 1.21791 0.87864 0.91782 0.95198 1.22465 0.98459 0.95291
0.95768 0.91004 1.21595 0.94755 1.01255 1.00813 0.89736 0.87206
0.91117 0.80525 0.71264 0.87917 0.89367 0.91361 0.74690 0.91327
0.92890 0.90739 0.88194 0.97137 0.95501 0.94390 0.91420 1.00065
0.93353 0.89946 0.93228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.30 9.68 71.24 0.69 -0.61 16
2 C 0.01 0.19 5.95 -19.44 -0.12 0.07 16
3 C -0.19 -2.38 9.73 22.43 0.22 -2.16 16
4 C 0.33 5.45 7.74 84.81 0.66 6.11 16
5 O -0.49 -6.23 13.55 -88.07 -1.19 -7.43 16
6 N -0.53 -11.27 10.28 -295.88 -3.04 -14.31 16
7 C 0.19 3.85 6.82 42.91 0.29 4.14 16
8 C -0.11 -2.11 9.78 71.24 0.70 -1.41 16
9 C -0.21 -4.09 5.65 -20.00 -0.11 -4.21 16
10 C 0.58 13.17 4.33 86.72 0.38 13.54 16
11 O -0.57 -18.24 17.10 -3.98 -0.07 -18.31 16
12 N -0.70 -12.47 5.55 -466.19 -2.59 -15.06 16
13 C 0.12 2.64 5.56 86.38 0.48 3.12 16
14 C -0.10 -2.04 4.74 30.59 0.14 -1.90 16
15 C -0.08 -2.35 2.38 -9.60 -0.02 -2.37 16
16 H 0.08 2.31 8.02 -2.39 -0.02 2.29 16
17 C 0.13 5.42 6.25 86.73 0.54 5.96 16
18 N -0.63 -32.92 3.39 -691.95 -2.35 -35.27 16
19 C -0.24 -13.69 10.27 84.04 0.86 -12.83 16
20 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16
21 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16
22 N -0.95 -57.08 10.09 21.65 0.22 -56.86 16
23 Si 0.98 46.40 29.55 68.60 2.03 48.43 16
24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16
25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16
26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
27 C 0.16 7.76 5.36 86.86 0.47 8.23 16
28 C -0.10 -3.42 3.09 -9.40 -0.03 -3.45 16
29 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16
30 C -0.13 -3.39 9.30 71.98 0.67 -2.72 16
31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
32 H 0.11 0.50 8.10 -2.39 -0.02 0.49 16
33 H 0.07 0.84 7.19 -2.38 -0.02 0.82 16
34 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16
35 H 0.42 0.84 9.06 -74.06 -0.67 0.17 16
36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16
37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
38 H 0.07 1.46 7.06 -2.39 -0.02 1.44 16
39 H 0.42 4.98 8.46 -92.71 -0.78 4.19 16
40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
41 H 0.05 1.40 7.69 -2.39 -0.02 1.38 16
42 H 0.07 1.53 7.95 -2.38 -0.02 1.52 16
43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
44 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16
45 H 0.03 1.07 7.70 -2.39 -0.02 1.05 16
46 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16
47 H 0.07 3.81 5.87 -2.39 -0.01 3.80 16
48 H -0.02 -1.00 8.04 -2.39 -0.02 -1.01 16
49 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16
50 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16
51 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16
Total: -1.00 -79.84 413.58 -1.22 -81.06
By element:
Atomic # 1 Polarization: 12.24 SS G_CDS: -0.51 Total: 11.73 kcal
Atomic # 6 Polarization: -0.26 SS G_CDS: 6.28 Total: 6.02 kcal
Atomic # 7 Polarization: -113.74 SS G_CDS: -7.76 Total: -121.50 kcal
Atomic # 8 Polarization: -24.47 SS G_CDS: -1.26 Total: -25.74 kcal
Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal
Total: -79.84 -1.22 -81.06 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103742640.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.572 kcal
(2) G-P(sol) polarization free energy of solvation -79.837 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.265 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.222 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.487 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds