Wall clock time and date at job start Wed Apr 1 2020 04:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37997 * 120.81846 * 2 1 4 4 C 1.39123 * 119.26165 * 180.27940 * 3 2 1 5 5 O 1.35505 * 119.52263 * 179.72539 * 4 3 2 6 6 N 1.32433 * 120.95427 * 359.69562 * 4 3 2 7 7 C 1.31638 * 121.79549 * 0.02674 * 6 4 3 8 8 C 1.50700 * 119.68413 * 179.97438 * 7 6 4 9 9 C 1.39566 * 120.62731 * 359.97438 * 7 6 4 10 10 C 1.47616 * 120.49858 * 179.97438 * 9 7 6 11 11 O 1.21583 * 119.99798 * 90.00738 * 10 9 7 12 12 N 1.34776 * 120.00035 * 270.00546 * 10 9 7 13 13 C 1.46508 * 119.99579 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46707 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47125 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.63496 * 51.85936 * 15 14 13 17 17 C 1.54335 * 111.00070 * 288.78390 * 15 14 13 18 18 N 1.47022 * 107.26195 * 219.59791 * 17 15 14 19 19 C 1.36935 * 125.64427 * 178.84992 * 18 17 15 20 20 H 1.08000 * 120.00518 * 359.44761 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.71412 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46676 * 90.00727 * 23 21 19 25 25 H 1.48502 * 109.46977 * 210.00025 * 23 21 19 26 26 H 1.48494 * 109.47494 * 330.00753 * 23 21 19 27 27 C 1.47426 * 108.70625 * 358.58545 * 18 17 15 28 28 C 1.54912 * 104.82994 * 24.35934 * 27 18 17 29 29 H 1.08995 * 111.00742 * 81.05954 * 28 27 18 30 30 C 1.52998 * 111.00086 * 204.87731 * 28 27 18 31 31 H 1.09001 * 109.46865 * 270.26928 * 1 2 3 32 32 H 1.09001 * 109.47720 * 30.27084 * 1 2 3 33 33 H 1.09006 * 109.47433 * 150.27250 * 1 2 3 34 34 H 1.08003 * 120.37215 * 359.97438 * 3 2 1 35 35 H 0.96703 * 113.99564 * 269.97144 * 5 4 3 36 36 H 1.09000 * 109.47093 * 270.02129 * 8 7 6 37 37 H 1.09000 * 109.47287 * 30.01837 * 8 7 6 38 38 H 1.08995 * 109.47112 * 150.02366 * 8 7 6 39 39 H 0.96996 * 120.00291 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46669 * 60.00382 * 13 12 10 41 41 H 1.08993 * 109.46871 * 299.99995 * 13 12 10 42 42 H 1.09009 * 109.47210 * 60.00549 * 14 13 12 43 43 H 1.09003 * 109.47538 * 300.00244 * 14 13 12 44 44 H 1.09007 * 109.99076 * 100.12594 * 17 15 14 45 45 H 1.09002 * 109.78210 * 338.95588 * 17 15 14 46 46 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36404 * 143.19245 * 27 18 17 48 48 H 1.08995 * 110.36566 * 265.51629 * 27 18 17 49 49 H 1.08996 * 109.47303 * 58.54471 * 30 28 27 50 50 H 1.09006 * 109.46537 * 178.54319 * 30 28 27 51 51 H 1.08996 * 109.47165 * 298.54472 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0059 5 8 4.3042 2.3079 -0.0116 6 7 4.2548 -0.0065 -0.0055 7 6 3.6205 -1.1600 0.0000 8 6 4.4081 -2.4448 -0.0004 9 6 2.2255 -1.2043 0.0061 10 6 1.5172 -2.4994 0.0117 11 8 1.2299 -3.0306 1.0669 12 7 1.1888 -3.0929 -1.1530 13 6 0.4863 -4.3785 -1.1474 14 6 0.2347 -4.8284 -2.5879 15 6 -0.4984 -6.1714 -2.5821 16 1 -1.3835 -6.1231 -1.9478 17 6 0.4362 -7.3097 -2.1210 18 7 0.1423 -8.4817 -2.9586 19 6 0.7728 -9.6949 -2.8830 20 1 1.5664 -9.8474 -2.1664 21 6 0.3957 -10.7272 -3.7311 22 7 -0.5674 -10.5397 -4.6082 23 14 1.2563 -12.3820 -3.6283 24 1 0.5431 -13.2514 -2.6583 25 1 1.2521 -13.0260 -4.9664 26 1 2.6576 -12.1842 -3.1785 27 6 -0.9478 -8.1365 -3.8891 28 6 -0.8796 -6.5949 -4.0253 29 1 -0.1079 -6.2992 -4.7359 30 6 -2.2394 -6.0191 -4.4256 31 1 -0.3633 0.0048 1.0277 32 1 -0.3634 0.8875 -0.5180 33 1 -0.3634 -0.8924 -0.5096 34 1 1.6935 2.1315 -0.0004 35 1 4.5037 2.6424 -0.8967 36 1 4.5939 -2.7567 -1.0281 37 1 5.3588 -2.2883 0.5093 38 1 3.8413 -3.2185 0.5173 39 1 1.4183 -2.6693 -1.9948 40 1 -0.4666 -4.2695 -0.6295 41 1 1.0953 -5.1231 -0.6348 42 1 1.1875 -4.9373 -3.1062 43 1 -0.3745 -4.0836 -3.1001 44 1 0.2472 -7.5458 -1.0737 45 1 1.4758 -7.0103 -2.2540 46 1 -0.8306 -11.2608 -5.2010 47 1 -0.7846 -8.6104 -4.8571 48 1 -1.9098 -8.4387 -3.4752 49 1 -2.9840 -6.2923 -3.6780 50 1 -2.1696 -4.9331 -4.4889 51 1 -2.5333 -6.4215 -5.3950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103742640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:58 Heat of formation + Delta-G solvation = -60.487127 kcal Electronic energy + Delta-G solvation = -30309.853052 eV Core-core repulsion = 26208.383353 eV Total energy + Delta-G solvation = -4101.469699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.06026 -40.49794 -39.68190 -38.18625 -36.48313 -35.39833 -35.00044 -33.17584 -32.52350 -32.13539 -29.17913 -29.07360 -28.24802 -27.34121 -25.76530 -24.64430 -23.39663 -22.41506 -21.90267 -21.37078 -20.66294 -19.48091 -18.86653 -18.78803 -18.31046 -17.31108 -17.03402 -16.67701 -16.39525 -15.85100 -15.70645 -15.44650 -15.21184 -14.87684 -14.71520 -14.55290 -14.32334 -14.25372 -14.13149 -13.88021 -13.68120 -13.47962 -13.36785 -13.33966 -13.11844 -12.95305 -12.85015 -12.76808 -12.72306 -12.63128 -12.38822 -12.18419 -11.94619 -11.77654 -11.46973 -11.32904 -11.22961 -10.95040 -10.73384 -10.64844 -10.54793 -10.17007 -9.91814 -8.85908 -7.76532 -5.20698 -0.34733 0.03019 1.38658 1.45223 1.46971 1.55720 2.00018 2.35851 2.49466 2.55574 3.31925 3.36396 3.43861 3.60695 3.72785 3.76393 3.93207 3.96140 4.09370 4.17003 4.26709 4.30014 4.36299 4.39367 4.52525 4.54392 4.57055 4.63790 4.66079 4.75181 4.80509 4.82110 4.86146 4.96333 5.03416 5.04074 5.08289 5.11731 5.14439 5.21298 5.30041 5.37214 5.40044 5.43142 5.47852 5.57570 5.79042 5.87618 6.34014 6.41361 6.54350 6.78942 7.08235 7.12918 7.81259 8.44841 9.24616 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002025 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.389721 B =13825.567464 C =14743.493359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.013 3.987 3 C -0.188 4.188 4 C 0.328 3.672 5 O -0.488 6.488 6 N -0.532 5.532 7 C 0.186 3.814 8 C -0.113 4.113 9 C -0.208 4.208 10 C 0.578 3.422 11 O -0.572 6.572 12 N -0.702 5.702 13 C 0.123 3.877 14 C -0.100 4.100 15 C -0.078 4.078 16 H 0.078 0.922 17 C 0.133 3.867 18 N -0.630 5.630 19 C -0.239 4.239 20 H 0.076 0.924 21 C -0.069 4.069 22 N -0.948 5.948 23 Si 0.978 3.022 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.270 1.270 27 C 0.159 3.841 28 C -0.100 4.100 29 H 0.072 0.928 30 C -0.127 4.127 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.177 0.823 35 H 0.425 0.575 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.416 0.584 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.011 0.989 45 H 0.027 0.973 46 H 0.246 0.754 47 H 0.068 0.932 48 H -0.019 1.019 49 H 0.047 0.953 50 H 0.082 0.918 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 29.150 3.080 29.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.005 3.995 3 C -0.209 4.209 4 C 0.149 3.851 5 O -0.299 6.299 6 N -0.253 5.253 7 C 0.047 3.953 8 C -0.170 4.170 9 C -0.213 4.213 10 C 0.363 3.637 11 O -0.451 6.451 12 N -0.353 5.353 13 C -0.001 4.001 14 C -0.138 4.138 15 C -0.097 4.097 16 H 0.096 0.904 17 C 0.008 3.992 18 N -0.356 5.356 19 C -0.368 4.368 20 H 0.094 0.906 21 C -0.261 4.261 22 N -0.598 5.598 23 Si 0.806 3.194 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.195 1.195 27 C 0.034 3.966 28 C -0.120 4.120 29 H 0.090 0.910 30 C -0.184 4.184 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.195 0.805 35 H 0.287 0.713 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.029 0.971 45 H 0.045 0.955 46 H 0.056 0.944 47 H 0.086 0.914 48 H -0.001 1.001 49 H 0.066 0.934 50 H 0.101 0.899 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.584 28.600 4.312 29.144 hybrid contribution -0.195 -1.306 -0.520 1.419 sum 3.388 27.294 3.791 27.764 Atomic orbital electron populations 1.21016 0.87714 1.05099 1.04120 1.20489 0.98045 0.90403 0.90592 1.22133 0.93075 1.00268 1.05416 1.19534 0.87864 0.85007 0.92670 1.84692 1.75916 1.33198 1.36118 1.67004 1.42640 0.98478 1.17201 1.21173 0.89420 0.93479 0.91197 1.20890 1.00417 0.90996 1.04724 1.20643 0.94853 0.94266 1.11543 1.18024 0.77767 0.84036 0.83876 1.90832 1.55660 1.65997 1.32616 1.45939 1.58355 1.22574 1.08479 1.21383 0.96759 0.83762 0.98150 1.21639 1.01538 0.95822 0.94807 1.22047 0.97836 0.93237 0.96594 0.90402 1.21592 0.97076 0.87528 0.93016 1.44862 1.40755 1.09454 1.40508 1.19443 1.13236 0.88667 1.15437 0.90568 1.25621 0.99915 1.01804 0.98767 1.70068 1.32811 1.31953 1.24932 0.85080 0.78273 0.79463 0.76539 1.21563 1.21737 1.19497 1.21791 0.87864 0.91782 0.95198 1.22465 0.98459 0.95291 0.95768 0.91004 1.21595 0.94755 1.01255 1.00813 0.89736 0.87206 0.91117 0.80525 0.71264 0.87917 0.89367 0.91361 0.74690 0.91327 0.92890 0.90739 0.88194 0.97137 0.95501 0.94390 0.91420 1.00065 0.93353 0.89946 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.68 71.24 0.69 -0.61 16 2 C 0.01 0.19 5.95 -19.44 -0.12 0.07 16 3 C -0.19 -2.38 9.73 22.43 0.22 -2.16 16 4 C 0.33 5.45 7.74 84.81 0.66 6.11 16 5 O -0.49 -6.23 13.55 -88.07 -1.19 -7.43 16 6 N -0.53 -11.27 10.28 -295.88 -3.04 -14.31 16 7 C 0.19 3.85 6.82 42.91 0.29 4.14 16 8 C -0.11 -2.11 9.78 71.24 0.70 -1.41 16 9 C -0.21 -4.09 5.65 -20.00 -0.11 -4.21 16 10 C 0.58 13.17 4.33 86.72 0.38 13.54 16 11 O -0.57 -18.24 17.10 -3.98 -0.07 -18.31 16 12 N -0.70 -12.47 5.55 -466.19 -2.59 -15.06 16 13 C 0.12 2.64 5.56 86.38 0.48 3.12 16 14 C -0.10 -2.04 4.74 30.59 0.14 -1.90 16 15 C -0.08 -2.35 2.38 -9.60 -0.02 -2.37 16 16 H 0.08 2.31 8.02 -2.39 -0.02 2.29 16 17 C 0.13 5.42 6.25 86.73 0.54 5.96 16 18 N -0.63 -32.92 3.39 -691.95 -2.35 -35.27 16 19 C -0.24 -13.69 10.27 84.04 0.86 -12.83 16 20 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 21 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 22 N -0.95 -57.08 10.09 21.65 0.22 -56.86 16 23 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.16 7.76 5.36 86.86 0.47 8.23 16 28 C -0.10 -3.42 3.09 -9.40 -0.03 -3.45 16 29 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 30 C -0.13 -3.39 9.30 71.98 0.67 -2.72 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 0.50 8.10 -2.39 -0.02 0.49 16 33 H 0.07 0.84 7.19 -2.38 -0.02 0.82 16 34 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.42 0.84 9.06 -74.06 -0.67 0.17 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.46 7.06 -2.39 -0.02 1.44 16 39 H 0.42 4.98 8.46 -92.71 -0.78 4.19 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 1.40 7.69 -2.39 -0.02 1.38 16 42 H 0.07 1.53 7.95 -2.38 -0.02 1.52 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.03 1.07 7.70 -2.39 -0.02 1.05 16 46 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 47 H 0.07 3.81 5.87 -2.39 -0.01 3.80 16 48 H -0.02 -1.00 8.04 -2.39 -0.02 -1.01 16 49 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16 50 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 51 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -79.84 413.58 -1.22 -81.06 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -0.51 Total: 11.73 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.28 Total: 6.02 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -7.76 Total: -121.50 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.26 Total: -25.74 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -79.84 -1.22 -81.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103742640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.572 kcal (2) G-P(sol) polarization free energy of solvation -79.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds