Wall clock time and date at job start Wed Apr 1 2020 04:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38358 * 119.40591 * 2 1 4 4 C 1.38343 * 119.45566 * 179.72395 * 3 2 1 5 5 C 1.50698 * 120.82692 * 180.27738 * 4 3 2 6 6 C 1.39986 * 118.34872 * 0.55675 * 4 3 2 7 7 C 1.47529 * 120.59643 * 179.71338 * 6 4 3 8 8 O 1.21590 * 119.99996 * 269.72480 * 7 6 4 9 9 N 1.34777 * 119.99448 * 89.72661 * 7 6 4 10 10 C 1.47423 * 125.65536 * 359.95698 * 9 7 6 11 11 C 1.54908 * 104.83357 * 204.16603 * 10 9 7 12 12 H 1.08993 * 111.00333 * 81.06738 * 11 10 9 13 13 C 1.53000 * 111.00021 * 204.91611 * 11 10 9 14 14 C 1.55153 * 101.58306 * 322.98916 * 11 10 9 15 15 H 1.09002 * 110.87048 * 277.07170 * 14 11 10 16 16 C 1.52997 * 110.72180 * 153.86678 * 14 11 10 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 14 11 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.36936 * 120.00002 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00175 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47195 * 59.99322 * 23 21 19 25 25 H 1.48506 * 109.47064 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46974 * 299.99436 * 23 21 19 27 27 C 1.47023 * 125.64227 * 180.02562 * 9 7 6 28 28 C 1.40282 * 118.80824 * 359.44340 * 6 4 3 29 29 O 1.35425 * 119.80055 * 180.26984 * 28 6 4 30 30 N 1.31879 * 119.40921 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47320 * 269.97809 * 1 2 3 32 32 H 1.09000 * 109.47449 * 29.97797 * 1 2 3 33 33 H 1.09003 * 109.47017 * 149.98467 * 1 2 3 34 34 H 1.07997 * 120.27101 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.46726 * 270.29337 * 5 4 3 36 36 H 1.09002 * 109.47256 * 30.28835 * 5 4 3 37 37 H 1.08993 * 109.47271 * 150.28982 * 5 4 3 38 38 H 1.09003 * 110.36451 * 323.00819 * 10 9 7 39 39 H 1.08997 * 110.36240 * 85.21343 * 10 9 7 40 40 H 1.09003 * 109.46772 * 172.19765 * 13 11 10 41 41 H 1.09001 * 109.47037 * 292.19546 * 13 11 10 42 42 H 1.08999 * 109.47466 * 52.19646 * 13 11 10 43 43 H 1.09002 * 109.47153 * 60.02328 * 16 14 11 44 44 H 1.09001 * 109.46832 * 300.02519 * 16 14 11 45 45 H 1.09001 * 109.47194 * 299.99650 * 17 16 14 46 46 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 47 47 H 0.97005 * 120.00448 * 359.97438 * 18 17 16 48 48 H 0.96993 * 120.00311 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.88798 * 59.48861 * 27 9 7 50 50 H 1.09002 * 110.01431 * 298.39198 * 27 9 7 51 51 H 0.96695 * 113.99491 * 90.00689 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0058 5 6 4.3408 2.5013 0.0122 6 6 4.2355 -0.0248 -0.0005 7 6 5.7097 -0.0814 -0.0011 8 8 6.3168 -0.1045 -1.0543 9 7 6.3835 -0.1074 1.1659 10 6 5.7766 -0.0835 2.5093 11 6 6.8812 0.4871 3.4333 12 1 6.9180 1.5747 3.3727 13 6 6.6789 0.0271 4.8784 14 6 8.1579 -0.1475 2.8213 15 1 8.3055 -1.1607 3.1953 16 6 9.3854 0.7186 3.1113 17 6 10.6257 0.0678 2.4956 18 7 11.8010 0.8969 2.7738 19 6 13.0338 0.5119 2.3184 20 1 13.1396 -0.4032 1.7546 21 6 14.1476 1.2972 2.5825 22 7 14.0188 2.4121 3.2700 23 14 15.8291 0.7723 1.9607 24 1 15.8011 0.6758 0.4792 25 1 16.8441 1.7753 2.3720 26 1 16.1787 -0.5512 2.5365 27 6 7.8456 -0.1630 1.3100 28 6 3.4758 -1.2041 -0.0004 29 8 4.0992 -2.4064 -0.0008 30 7 2.1545 -1.1488 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8899 -0.5141 34 1 1.6410 2.1375 -0.0004 35 1 4.5265 2.8186 -1.0139 36 1 3.7621 3.2663 0.5300 37 1 5.2914 2.3555 0.5252 38 1 4.9013 0.5660 2.5186 39 1 5.5032 -1.0919 2.8199 40 1 7.5390 0.3247 5.4782 41 1 5.7772 0.4867 5.2832 42 1 6.5763 -1.0578 4.9035 43 1 9.5197 0.8092 4.1892 44 1 9.2418 1.7087 2.6785 45 1 10.7693 -0.9222 2.9283 46 1 10.4913 -0.0227 1.4178 47 1 11.7061 1.7186 3.2805 48 1 14.7969 2.9610 3.4542 49 1 8.2988 0.7036 0.8289 50 1 8.2301 -1.0790 0.8616 51 1 4.2805 -2.7556 0.8824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104466773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:57 Heat of formation + Delta-G solvation = -40.209387 kcal Electronic energy + Delta-G solvation = -30833.415806 eV Core-core repulsion = 26732.825416 eV Total energy + Delta-G solvation = -4100.590390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.39457 -39.95801 -38.07957 -37.74327 -35.18130 -34.62048 -33.29971 -32.19060 -32.11100 -30.30335 -28.98901 -28.04017 -26.94120 -26.61755 -24.44592 -23.54394 -22.56087 -21.93030 -20.79124 -20.25177 -19.76116 -18.83545 -17.78558 -17.47948 -17.09197 -16.62809 -16.00646 -15.54337 -14.85659 -14.73794 -14.70972 -14.45228 -14.31197 -13.85248 -13.74263 -13.52918 -13.43086 -13.33642 -13.22036 -12.99166 -12.86913 -12.78855 -12.76506 -12.45855 -12.29834 -12.20246 -12.02505 -11.82615 -11.50465 -11.20574 -11.05796 -10.83158 -10.65815 -10.52466 -10.42981 -10.32652 -9.99797 -9.94403 -9.75972 -9.65274 -9.20025 -8.84940 -8.83447 -6.90657 -5.74974 -3.03496 0.37071 0.66864 2.32483 2.67732 2.98192 3.18815 3.46022 3.50040 3.51298 3.96417 4.08397 4.16327 4.24974 4.47585 4.56012 4.61191 4.65858 4.74239 4.86593 4.95705 5.01965 5.10250 5.11883 5.15589 5.16566 5.17590 5.26530 5.39871 5.43080 5.47989 5.51970 5.58169 5.62032 5.66982 5.70646 5.73936 5.83263 5.94845 5.95416 5.99663 6.04344 6.11418 6.25317 6.35763 6.36703 6.83478 6.87732 7.02562 7.25747 7.44495 7.71635 7.91369 8.44255 9.55162 10.13221 10.47581 11.47951 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.002102 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.691192 B =13316.123009 C =13589.690158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.186 4.186 4 C 0.011 3.989 5 C -0.125 4.125 6 C -0.194 4.194 7 C 0.587 3.413 8 O -0.519 6.519 9 N -0.611 5.611 10 C 0.103 3.897 11 C -0.100 4.100 12 H 0.088 0.912 13 C -0.140 4.140 14 C -0.088 4.088 15 H 0.087 0.913 16 C -0.115 4.115 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.110 3.890 28 C 0.354 3.646 29 O -0.472 6.472 30 N -0.505 5.505 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.112 -2.486 0.620 31.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.206 4.206 4 C 0.003 3.997 5 C -0.182 4.182 6 C -0.200 4.200 7 C 0.373 3.627 8 O -0.395 6.395 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.119 4.119 12 H 0.107 0.893 13 C -0.198 4.198 14 C -0.108 4.108 15 H 0.106 0.894 16 C -0.153 4.153 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.011 4.011 28 C 0.175 3.825 29 O -0.279 6.279 30 N -0.226 5.226 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -31.103 -3.353 -0.724 31.292 hybrid contribution 1.494 0.540 0.275 1.612 sum -29.609 -2.813 -0.450 29.745 Atomic orbital electron populations 1.20805 0.88043 1.04011 1.03560 1.21189 0.97020 0.87022 0.91844 1.21792 0.93540 0.99696 1.05525 1.20285 0.93703 0.94178 0.91524 1.20962 1.00176 0.92998 1.04041 1.20781 0.94681 0.94193 1.10372 1.17398 0.85813 0.76620 0.82820 1.90858 1.69119 1.49005 1.30473 1.48493 1.08080 1.72687 1.05237 1.22439 0.96793 1.00902 0.81882 1.22419 0.93825 1.00971 0.94689 0.89345 1.21698 1.02214 1.01272 0.94623 1.22296 0.94689 1.00714 0.93069 0.89427 1.21731 0.93270 0.98621 1.01651 1.20685 0.86262 0.93934 0.96792 1.42349 1.02731 1.26434 1.66273 1.19198 0.84972 1.05049 1.27796 0.91247 1.24745 0.98002 0.97287 1.01068 1.69645 1.29364 1.14726 1.44631 0.86259 0.84033 0.77392 0.78464 1.21244 1.21685 1.21271 1.22180 0.78756 1.03166 0.97024 1.18965 0.86342 0.84388 0.92843 1.84774 1.76650 1.32653 1.33811 1.67051 1.09006 1.30454 1.16052 0.89820 0.90141 0.90067 0.83690 0.89399 0.89977 0.90623 0.91016 0.91413 0.91398 0.92541 0.92368 0.91244 0.91679 0.96439 0.96285 0.78342 0.93502 0.90480 0.90911 0.73930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.16 36.00 0.37 -0.15 16 2 C 0.17 1.38 6.78 -82.53 -0.56 0.82 16 3 C -0.19 -1.36 9.41 -39.50 -0.37 -1.74 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.52 16 5 C -0.13 -0.99 9.69 36.00 0.35 -0.64 16 6 C -0.19 -2.26 4.55 -104.69 -0.48 -2.73 16 7 C 0.59 8.16 5.45 -12.47 -0.07 8.09 16 8 O -0.52 -9.59 17.43 5.29 0.09 -9.49 16 9 N -0.61 -7.13 3.33 -171.75 -0.57 -7.70 16 10 C 0.10 0.86 6.15 -2.53 -0.02 0.84 16 11 C -0.10 -0.88 3.09 -88.47 -0.27 -1.15 16 12 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 13 C -0.14 -1.03 9.31 37.16 0.35 -0.68 16 14 C -0.09 -1.00 2.45 -88.79 -0.22 -1.22 16 15 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 16 C -0.11 -1.69 4.71 -26.73 -0.13 -1.82 16 17 C 0.15 2.97 6.11 -4.04 -0.02 2.95 16 18 N -0.73 -18.72 5.60 -59.91 -0.34 -19.06 16 19 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 23 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.11 1.44 5.61 -3.06 -0.02 1.42 16 28 C 0.35 4.13 7.77 -16.61 -0.13 4.00 16 29 O -0.47 -5.29 13.01 -17.97 -0.23 -5.52 16 30 N -0.51 -5.54 10.28 -9.21 -0.09 -5.64 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 37 H 0.07 0.70 7.19 -51.93 -0.37 0.32 16 38 H 0.07 0.54 7.69 -51.93 -0.40 0.14 16 39 H 0.07 0.47 7.99 -51.93 -0.41 0.06 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 47 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.08 1.15 7.76 -51.93 -0.40 0.74 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.40 2.51 9.06 45.56 0.41 2.92 16 LS Contribution 418.84 15.07 6.31 6.31 Total: -1.00 -36.83 418.84 -8.96 -45.78 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.74 Total: 5.37 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.08 Total: -0.01 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.28 Total: -60.16 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.14 Total: -15.02 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.83 -8.96 -45.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104466773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.573 kcal (2) G-P(sol) polarization free energy of solvation -36.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds