Wall clock time and date at job start Wed Apr 1 2020 04:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38358 * 119.40591 * 2 1 4 4 C 1.38343 * 119.45566 * 179.72395 * 3 2 1 5 5 C 1.50698 * 120.82692 * 180.27738 * 4 3 2 6 6 C 1.39986 * 118.34872 * 0.55675 * 4 3 2 7 7 C 1.47529 * 120.59643 * 179.71338 * 6 4 3 8 8 O 1.21590 * 119.99996 * 269.72480 * 7 6 4 9 9 N 1.34777 * 119.99448 * 89.72661 * 7 6 4 10 10 C 1.47423 * 125.65536 * 359.95698 * 9 7 6 11 11 C 1.54908 * 104.83357 * 204.16603 * 10 9 7 12 12 H 1.08993 * 111.00333 * 81.06738 * 11 10 9 13 13 C 1.53000 * 111.00021 * 204.91611 * 11 10 9 14 14 C 1.55153 * 101.58306 * 322.98916 * 11 10 9 15 15 H 1.09002 * 110.87048 * 277.07170 * 14 11 10 16 16 C 1.52997 * 110.72180 * 153.86678 * 14 11 10 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 14 11 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.36936 * 120.00002 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00175 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47195 * 59.99322 * 23 21 19 25 25 H 1.48506 * 109.47064 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46974 * 299.99436 * 23 21 19 27 27 C 1.47023 * 125.64227 * 180.02562 * 9 7 6 28 28 C 1.40282 * 118.80824 * 359.44340 * 6 4 3 29 29 O 1.35425 * 119.80055 * 180.26984 * 28 6 4 30 30 N 1.31879 * 119.40921 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47320 * 269.97809 * 1 2 3 32 32 H 1.09000 * 109.47449 * 29.97797 * 1 2 3 33 33 H 1.09003 * 109.47017 * 149.98467 * 1 2 3 34 34 H 1.07997 * 120.27101 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.46726 * 270.29337 * 5 4 3 36 36 H 1.09002 * 109.47256 * 30.28835 * 5 4 3 37 37 H 1.08993 * 109.47271 * 150.28982 * 5 4 3 38 38 H 1.09003 * 110.36451 * 323.00819 * 10 9 7 39 39 H 1.08997 * 110.36240 * 85.21343 * 10 9 7 40 40 H 1.09003 * 109.46772 * 172.19765 * 13 11 10 41 41 H 1.09001 * 109.47037 * 292.19546 * 13 11 10 42 42 H 1.08999 * 109.47466 * 52.19646 * 13 11 10 43 43 H 1.09002 * 109.47153 * 60.02328 * 16 14 11 44 44 H 1.09001 * 109.46832 * 300.02519 * 16 14 11 45 45 H 1.09001 * 109.47194 * 299.99650 * 17 16 14 46 46 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 47 47 H 0.97005 * 120.00448 * 359.97438 * 18 17 16 48 48 H 0.96993 * 120.00311 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.88798 * 59.48861 * 27 9 7 50 50 H 1.09002 * 110.01431 * 298.39198 * 27 9 7 51 51 H 0.96695 * 113.99491 * 90.00689 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0058 5 6 4.3408 2.5013 0.0122 6 6 4.2355 -0.0248 -0.0005 7 6 5.7097 -0.0814 -0.0011 8 8 6.3168 -0.1045 -1.0543 9 7 6.3835 -0.1074 1.1659 10 6 5.7766 -0.0835 2.5093 11 6 6.8812 0.4871 3.4333 12 1 6.9180 1.5747 3.3727 13 6 6.6789 0.0271 4.8784 14 6 8.1579 -0.1475 2.8213 15 1 8.3055 -1.1607 3.1953 16 6 9.3854 0.7186 3.1113 17 6 10.6257 0.0678 2.4956 18 7 11.8010 0.8969 2.7738 19 6 13.0338 0.5119 2.3184 20 1 13.1396 -0.4032 1.7546 21 6 14.1476 1.2972 2.5825 22 7 14.0188 2.4121 3.2700 23 14 15.8291 0.7723 1.9607 24 1 15.8011 0.6758 0.4792 25 1 16.8441 1.7753 2.3720 26 1 16.1787 -0.5512 2.5365 27 6 7.8456 -0.1630 1.3100 28 6 3.4758 -1.2041 -0.0004 29 8 4.0992 -2.4064 -0.0008 30 7 2.1545 -1.1488 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8899 -0.5141 34 1 1.6410 2.1375 -0.0004 35 1 4.5265 2.8186 -1.0139 36 1 3.7621 3.2663 0.5300 37 1 5.2914 2.3555 0.5252 38 1 4.9013 0.5660 2.5186 39 1 5.5032 -1.0919 2.8199 40 1 7.5390 0.3247 5.4782 41 1 5.7772 0.4867 5.2832 42 1 6.5763 -1.0578 4.9035 43 1 9.5197 0.8092 4.1892 44 1 9.2418 1.7087 2.6785 45 1 10.7693 -0.9222 2.9283 46 1 10.4913 -0.0227 1.4178 47 1 11.7061 1.7186 3.2805 48 1 14.7969 2.9610 3.4542 49 1 8.2988 0.7036 0.8289 50 1 8.2301 -1.0790 0.8616 51 1 4.2805 -2.7556 0.8824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104466773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:56 Heat of formation + Delta-G solvation = -68.318894 kcal Electronic energy + Delta-G solvation = -30834.634725 eV Core-core repulsion = 26732.825416 eV Total energy + Delta-G solvation = -4101.809310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.19888 -40.85806 -39.15033 -38.50414 -36.89196 -35.39344 -34.59415 -33.49237 -32.82407 -31.84081 -29.86615 -28.73051 -28.13542 -27.33462 -25.97922 -24.54460 -23.92131 -22.74577 -21.96042 -21.14541 -20.74485 -19.59834 -19.17564 -18.62515 -18.25398 -17.66690 -16.81170 -16.65077 -16.51483 -15.83776 -15.56789 -15.42426 -15.34457 -15.09163 -14.97695 -14.45667 -14.35399 -14.27499 -14.14139 -13.97834 -13.89734 -13.66250 -13.37033 -13.25691 -13.10017 -13.00217 -12.85568 -12.83564 -12.67040 -12.65816 -12.53730 -12.31356 -12.16422 -11.92294 -11.69663 -11.59218 -11.46203 -11.23963 -10.93503 -10.65791 -10.56276 -9.89451 -9.84433 -9.01951 -7.97369 -5.26234 -0.33268 -0.01207 1.28749 1.45231 1.48558 1.54643 1.75074 2.31538 2.48610 2.54217 3.17223 3.35771 3.43533 3.44632 3.51323 3.60637 3.68385 3.94489 4.08975 4.14642 4.19186 4.24175 4.25782 4.40294 4.45236 4.46858 4.51771 4.54617 4.59682 4.61288 4.68994 4.76037 4.82627 4.83044 4.88270 4.93548 4.98402 5.00411 5.07172 5.12174 5.15622 5.17715 5.26910 5.33310 5.40854 5.47375 5.49696 5.51901 6.25533 6.27921 6.40669 6.76573 6.87935 7.31493 8.07823 8.31117 9.25839 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.002102 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.691192 B =13316.123009 C =13589.690158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.163 3.837 3 C -0.172 4.172 4 C 0.006 3.994 5 C -0.123 4.123 6 C -0.214 4.214 7 C 0.588 3.412 8 O -0.580 6.580 9 N -0.604 5.604 10 C 0.103 3.897 11 C -0.090 4.090 12 H 0.086 0.914 13 C -0.137 4.137 14 C -0.077 4.077 15 H 0.100 0.900 16 C -0.099 4.099 17 C 0.148 3.852 18 N -0.747 5.747 19 C -0.250 4.250 20 H 0.072 0.928 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.974 3.026 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.276 1.276 27 C 0.110 3.890 28 C 0.343 3.657 29 O -0.491 6.491 30 N -0.527 5.527 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.185 0.815 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.022 0.978 46 H 0.011 0.989 47 H 0.375 0.625 48 H 0.252 0.748 49 H 0.051 0.949 50 H 0.058 0.942 51 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.887 -2.305 1.838 34.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.026 3.974 3 C -0.192 4.192 4 C -0.002 4.002 5 C -0.180 4.180 6 C -0.221 4.221 7 C 0.377 3.623 8 O -0.460 6.460 9 N -0.336 5.336 10 C -0.018 4.018 11 C -0.109 4.109 12 H 0.105 0.895 13 C -0.194 4.194 14 C -0.096 4.096 15 H 0.118 0.882 16 C -0.137 4.137 17 C 0.022 3.978 18 N -0.390 5.390 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.268 4.268 22 N -0.618 5.618 23 Si 0.802 3.198 24 H -0.207 1.207 25 H -0.218 1.218 26 H -0.202 1.202 27 C -0.012 4.012 28 C 0.163 3.837 29 O -0.301 6.301 30 N -0.248 5.248 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.202 0.798 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.040 0.960 46 H 0.029 0.971 47 H 0.207 0.793 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -33.918 -3.209 0.539 34.074 hybrid contribution 2.255 0.471 -0.117 2.307 sum -31.663 -2.738 0.423 31.784 Atomic orbital electron populations 1.20940 0.85397 1.04931 1.04918 1.21899 0.98706 0.86654 0.90188 1.22171 0.92574 1.00979 1.03439 1.20538 0.94782 0.93632 0.91236 1.20992 0.99743 0.93355 1.03878 1.20668 0.92933 0.95483 1.12983 1.17814 0.86873 0.75334 0.82320 1.90811 1.70569 1.52004 1.32638 1.48519 1.07501 1.71313 1.06269 1.22671 0.96897 1.02642 0.79582 1.22380 0.91954 1.00743 0.95783 0.89519 1.21687 1.02776 1.02075 0.92873 1.22180 0.94511 1.00949 0.91973 0.88177 1.21558 0.92416 0.98368 1.01390 1.20864 0.86514 0.93779 0.96636 1.42578 1.03603 1.26788 1.66036 1.19593 0.86373 1.04970 1.27224 0.91024 1.25582 1.01719 0.97597 1.01890 1.69795 1.30068 1.15834 1.46117 0.85213 0.79424 0.77186 0.77952 1.20718 1.21788 1.20202 1.22055 0.79860 1.01267 0.98039 1.19052 0.86793 0.84260 0.93548 1.84723 1.76880 1.32954 1.35570 1.67131 1.08534 1.32005 1.17109 0.88051 0.87542 0.90838 0.79797 0.90018 0.86616 0.92513 0.89342 0.89201 0.92214 0.90637 0.91373 0.90563 0.92489 0.95999 0.97138 0.79337 0.93893 0.93077 0.92367 0.72060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 10.16 71.23 0.72 0.08 16 2 C 0.16 2.28 6.78 42.58 0.29 2.57 16 3 C -0.17 -1.97 9.41 22.32 0.21 -1.76 16 4 C 0.01 0.10 5.95 -19.42 -0.12 -0.01 16 5 C -0.12 -1.77 9.69 71.24 0.69 -1.08 16 6 C -0.21 -4.95 4.55 -19.91 -0.09 -5.04 16 7 C 0.59 17.01 5.45 86.69 0.47 17.48 16 8 O -0.58 -22.95 17.43 -4.00 -0.07 -23.02 16 9 N -0.60 -14.27 3.33 -815.55 -2.71 -16.99 16 10 C 0.10 1.54 6.15 86.86 0.53 2.07 16 11 C -0.09 -1.40 3.09 -9.40 -0.03 -1.43 16 12 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16 13 C -0.14 -1.59 9.31 71.98 0.67 -0.92 16 14 C -0.08 -1.69 2.45 -9.61 -0.02 -1.72 16 15 H 0.10 2.02 8.04 -2.39 -0.02 2.00 16 16 C -0.10 -2.94 4.71 30.59 0.14 -2.79 16 17 C 0.15 5.96 6.11 86.38 0.53 6.49 16 18 N -0.75 -38.94 5.60 -343.46 -1.92 -40.87 16 19 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 20 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 22 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 23 Si 0.97 47.14 29.55 68.60 2.03 49.16 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 C 0.11 3.00 5.61 86.73 0.49 3.48 16 28 C 0.34 7.91 7.77 85.13 0.66 8.57 16 29 O -0.49 -11.24 13.01 -87.21 -1.13 -12.37 16 30 N -0.53 -10.94 10.28 -296.06 -3.04 -13.98 16 31 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.11 0.13 8.07 -2.39 -0.02 0.11 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.12 0.83 8.10 -2.39 -0.02 0.81 16 37 H 0.06 1.03 7.19 -2.39 -0.02 1.01 16 38 H 0.09 1.09 7.69 -2.39 -0.02 1.07 16 39 H 0.09 1.00 7.99 -2.39 -0.02 0.98 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 1.78 8.06 -2.39 -0.02 1.76 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.01 0.45 7.49 -2.39 -0.02 0.43 16 47 H 0.37 20.44 7.67 -92.70 -0.71 19.73 16 48 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 49 H 0.05 1.64 7.76 -2.39 -0.02 1.63 16 50 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.42 5.24 9.06 -74.06 -0.67 4.57 16 Total: -1.00 -83.33 418.84 -0.56 -83.88 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.44 Total: 25.37 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 6.46 Total: 8.43 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -7.40 Total: -131.45 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -1.20 Total: -35.40 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -83.33 -0.56 -83.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104466773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.566 kcal (2) G-P(sol) polarization free energy of solvation -83.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds