Wall clock time and date at job start Wed Apr 1 2020 04:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38351 * 119.41066 * 2 1 4 4 C 1.38342 * 119.45967 * 180.25758 * 3 2 1 5 5 C 1.50700 * 120.82720 * 179.75174 * 4 3 2 6 6 C 1.39990 * 118.34649 * 359.47229 * 4 3 2 7 7 C 1.47519 * 120.59369 * 180.23139 * 6 4 3 8 8 O 1.21594 * 120.00126 * 90.00900 * 7 6 4 9 9 N 1.34781 * 120.00449 * 270.00284 * 7 6 4 10 10 C 1.46497 * 120.00289 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47151 * 176.62454 * 10 9 7 12 12 N 1.46507 * 109.47046 * 54.62625 * 11 10 9 13 13 C 1.36938 * 119.99858 * 62.83416 * 12 11 10 14 14 H 1.08000 * 120.00236 * 354.26533 * 13 12 11 15 15 C 1.38814 * 119.99809 * 174.25553 * 13 12 11 16 16 N 1.31615 * 120.00191 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00062 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47160 * 89.99805 * 17 15 13 19 19 H 1.48498 * 109.47087 * 210.00094 * 17 15 13 20 20 H 1.48506 * 109.46736 * 330.00069 * 17 15 13 21 21 C 1.52998 * 109.47374 * 294.63002 * 11 10 9 22 22 C 1.53001 * 109.47374 * 180.02562 * 21 11 10 23 23 C 1.52999 * 109.47272 * 59.99513 * 22 21 11 24 24 C 1.53007 * 109.47147 * 300.00454 * 23 22 21 25 25 C 1.52997 * 109.47108 * 59.99819 * 24 23 22 26 26 C 1.40277 * 118.80576 * 0.25829 * 6 4 3 27 27 O 1.35427 * 119.79872 * 179.97438 * 26 6 4 28 28 N 1.31885 * 119.40576 * 179.71844 * 2 1 3 29 29 H 1.08997 * 109.47121 * 270.27951 * 1 2 3 30 30 H 1.08999 * 109.46811 * 30.27756 * 1 2 3 31 31 H 1.08996 * 109.47182 * 150.28000 * 1 2 3 32 32 H 1.08005 * 120.27426 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46839 * 269.71689 * 5 4 3 34 34 H 1.09001 * 109.47227 * 149.71600 * 5 4 3 35 35 H 1.08999 * 109.46897 * 29.71483 * 5 4 3 36 36 H 0.97004 * 119.99184 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.46849 * 296.62616 * 10 9 7 38 38 H 1.08998 * 109.47435 * 56.62282 * 10 9 7 39 39 H 0.97000 * 120.00096 * 242.84501 * 12 11 10 40 40 H 0.96998 * 120.00577 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46680 * 299.99577 * 21 11 10 42 42 H 1.08996 * 109.47186 * 59.99591 * 21 11 10 43 43 H 1.09004 * 109.46545 * 299.99709 * 22 21 11 44 44 H 1.08997 * 109.47082 * 179.97438 * 22 21 11 45 45 H 1.08996 * 109.47369 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47004 * 59.99815 * 23 22 21 47 47 H 1.09004 * 109.46646 * 299.99580 * 24 23 22 48 48 H 1.08996 * 109.47014 * 179.97438 * 24 23 22 49 49 H 1.09006 * 109.46830 * 180.02562 * 25 24 23 50 50 H 1.08998 * 109.47177 * 60.00344 * 25 24 23 51 51 H 0.96696 * 114.00055 * 89.99804 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0054 5 6 4.3410 2.5011 -0.0112 6 6 4.2356 -0.0250 0.0006 7 6 5.7097 -0.0816 0.0004 8 8 6.3176 -0.0997 1.0533 9 7 6.3828 -0.1133 -1.1669 10 6 7.8466 -0.1700 -1.1671 11 6 8.3525 -0.2816 -2.6067 12 7 7.8035 0.8182 -3.4039 13 6 8.1201 2.1137 -3.0930 14 1 8.6980 2.3306 -2.2067 15 6 7.6985 3.1482 -3.9171 16 7 6.9940 2.8839 -4.9969 17 14 8.1310 4.9153 -3.4934 18 1 9.4268 5.2727 -4.1246 19 1 7.0677 5.8201 -3.9993 20 1 8.2424 5.0579 -2.0194 21 6 7.9036 -1.6171 -3.2031 22 6 8.4101 -1.7289 -4.6425 23 6 9.9382 -1.6536 -4.6529 24 6 10.3870 -0.3179 -4.0565 25 6 9.8806 -0.2062 -2.6171 26 6 3.4758 -1.2042 0.0063 27 8 4.0991 -2.4065 0.0116 28 7 2.1546 -1.1489 0.0056 29 1 -0.3633 0.0050 1.0276 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6412 2.1376 -0.0004 33 1 4.5272 2.8085 -1.0402 34 1 5.2913 2.3603 0.5036 35 1 3.7620 3.2711 0.4988 36 1 5.8977 -0.0993 -2.0069 37 1 8.2454 0.7361 -0.7110 38 1 8.1767 -1.0389 -0.5977 39 1 7.2155 0.6287 -4.1518 40 1 6.6990 3.6067 -5.5726 41 1 8.3122 -2.4353 -2.6100 42 1 6.8151 -1.6710 -3.1953 43 1 8.0019 -0.9106 -5.2358 44 1 8.0907 -2.6806 -5.0671 45 1 10.2989 -1.7328 -5.6783 46 1 10.3463 -2.4718 -4.0595 47 1 9.9789 0.5003 -4.6499 48 1 11.4756 -0.2645 -4.0635 49 1 10.2000 0.7455 -2.1924 50 1 10.2888 -1.0244 -2.0238 51 1 4.2804 -2.7515 0.8965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115655672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:14 Heat of formation + Delta-G solvation = -73.686350 kcal Electronic energy + Delta-G solvation = -32350.566956 eV Core-core repulsion = 28248.524896 eV Total energy + Delta-G solvation = -4102.042060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.02548 -40.70012 -39.63297 -38.42417 -35.90170 -35.27810 -35.02449 -32.96915 -32.62988 -31.56941 -30.42736 -29.44299 -28.51331 -26.61976 -25.69376 -24.42002 -23.49117 -22.80517 -21.82337 -21.37571 -19.86905 -19.51217 -19.12878 -18.71467 -18.24926 -17.24191 -16.73896 -16.57832 -16.12273 -15.95476 -15.58846 -15.49774 -15.16260 -15.07545 -14.88045 -14.61903 -14.32968 -14.25488 -14.01679 -13.94625 -13.50614 -13.40123 -13.28365 -13.25713 -12.99120 -12.92960 -12.84628 -12.80052 -12.63725 -12.60206 -12.50703 -12.05244 -11.89646 -11.67407 -11.42174 -11.31136 -11.08804 -10.76860 -10.72358 -10.62263 -10.47917 -9.98750 -9.86464 -8.90619 -7.85606 -5.10866 -0.29255 0.01569 1.45160 1.46273 1.48749 1.53626 2.19001 2.30622 2.59256 2.63844 3.41851 3.46858 3.53098 3.68701 3.79973 3.90365 3.98228 4.00750 4.12484 4.17864 4.27015 4.38470 4.45746 4.49075 4.55408 4.60776 4.65802 4.72887 4.75263 4.80059 4.81940 4.89072 4.93751 4.94470 5.00430 5.04217 5.12636 5.16292 5.17046 5.21034 5.40076 5.47242 5.49062 5.50523 5.54068 5.61305 5.67062 5.80434 6.35952 6.41827 6.51039 6.77724 7.12669 7.44914 8.16681 8.43375 9.36838 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.004124 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.873338 B = 6787.272713 C = 8398.571208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.162 3.838 3 C -0.179 4.179 4 C 0.005 3.995 5 C -0.121 4.121 6 C -0.221 4.221 7 C 0.576 3.424 8 O -0.582 6.582 9 N -0.681 5.681 10 C 0.121 3.879 11 C 0.191 3.809 12 N -0.709 5.709 13 C -0.206 4.206 14 H 0.063 0.937 15 C -0.060 4.060 16 N -0.960 5.960 17 Si 0.945 3.055 18 H -0.296 1.296 19 H -0.299 1.299 20 H -0.279 1.279 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.105 4.105 25 C -0.113 4.113 26 C 0.345 3.655 27 O -0.485 6.485 28 N -0.524 5.524 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.179 0.821 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.109 0.891 36 H 0.403 0.597 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.375 0.625 40 H 0.246 0.754 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.042 0.958 50 H 0.073 0.927 51 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 -8.405 8.240 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.024 3.976 3 C -0.198 4.198 4 C -0.002 4.002 5 C -0.177 4.177 6 C -0.228 4.228 7 C 0.361 3.639 8 O -0.464 6.464 9 N -0.329 5.329 10 C -0.005 4.005 11 C 0.100 3.900 12 N -0.350 5.350 13 C -0.338 4.338 14 H 0.081 0.919 15 C -0.253 4.253 16 N -0.612 5.612 17 Si 0.777 3.223 18 H -0.224 1.224 19 H -0.226 1.226 20 H -0.204 1.204 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.152 4.152 26 C 0.165 3.835 27 O -0.294 6.294 28 N -0.245 5.245 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.197 0.803 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.239 0.761 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.209 0.791 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.091 0.909 51 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -8.208 -9.037 8.442 14.843 hybrid contribution 0.703 1.958 -0.163 2.087 sum -7.505 -7.079 8.279 13.228 Atomic orbital electron populations 1.20919 0.85170 1.05022 1.04813 1.21879 0.98792 0.86535 0.90373 1.22147 0.92601 1.01121 1.03975 1.20519 0.94895 0.93789 0.91040 1.20914 0.99581 0.93711 1.03537 1.20893 0.94161 0.95219 1.12510 1.17978 0.86682 0.75434 0.83800 1.90733 1.70329 1.52964 1.32352 1.45771 1.07849 1.71285 1.07967 1.21838 0.79170 1.00051 0.99477 1.20003 0.92937 0.88656 0.88389 1.42487 1.56269 1.00723 1.35476 1.19191 1.25917 0.84352 1.04350 0.91895 1.25136 1.02427 1.00056 0.97666 1.69761 1.43818 1.31129 1.16458 0.85561 0.76675 0.82772 0.77291 1.22377 1.22617 1.20435 1.21643 1.00057 0.95903 0.96907 1.21427 0.96291 1.01097 0.96125 1.21446 0.95315 0.97084 1.00575 1.21299 0.99119 0.97862 0.96041 1.21768 0.95502 1.00671 0.97279 1.19034 0.86769 0.84313 0.93369 1.84639 1.76799 1.32492 1.35506 1.67124 1.08590 1.31642 1.17167 0.88173 0.87758 0.90380 0.80345 0.90325 0.92988 0.87283 0.76125 0.94281 0.91408 0.79121 0.94495 0.89957 0.92869 0.93850 0.90983 0.92212 0.90749 0.94026 0.92301 0.93960 0.90888 0.72051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.16 71.24 0.72 -0.61 16 2 C 0.16 3.58 6.78 42.58 0.29 3.87 16 3 C -0.18 -3.89 9.41 22.32 0.21 -3.68 16 4 C 0.01 0.15 5.95 -19.41 -0.12 0.04 16 5 C -0.12 -3.41 9.69 71.24 0.69 -2.72 16 6 C -0.22 -7.15 5.66 -19.91 -0.11 -7.27 16 7 C 0.58 21.15 5.42 86.69 0.47 21.62 16 8 O -0.58 -24.43 17.11 -4.01 -0.07 -24.50 16 9 N -0.68 -24.66 5.09 -466.29 -2.37 -27.03 16 10 C 0.12 4.37 4.37 86.38 0.38 4.74 16 11 C 0.19 6.69 0.41 3.60 0.00 6.69 16 12 N -0.71 -30.91 3.40 -303.33 -1.03 -31.94 16 13 C -0.21 -10.30 8.70 84.03 0.73 -9.57 16 14 H 0.06 3.20 6.77 -2.91 -0.02 3.18 16 15 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 16 N -0.96 -54.66 13.07 21.65 0.28 -54.38 16 17 Si 0.95 44.70 29.55 68.60 2.03 46.73 16 18 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 C -0.11 -3.20 4.65 30.59 0.14 -3.06 16 22 C -0.11 -3.28 5.75 30.59 0.18 -3.10 16 23 C -0.11 -2.92 5.92 30.60 0.18 -2.74 16 24 C -0.11 -3.46 5.77 30.60 0.18 -3.28 16 25 C -0.11 -3.75 4.52 30.59 0.14 -3.61 16 26 C 0.34 10.43 7.77 85.13 0.66 11.09 16 27 O -0.48 -13.44 13.01 -87.22 -1.14 -14.57 16 28 N -0.52 -14.62 10.28 -296.06 -3.04 -17.66 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 1.72 7.19 -2.39 -0.02 1.70 16 35 H 0.11 2.26 8.10 -2.39 -0.02 2.24 16 36 H 0.40 14.98 7.37 -92.71 -0.68 14.30 16 37 H 0.04 1.61 7.50 -2.39 -0.02 1.59 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.38 17.96 6.63 -92.71 -0.61 17.34 16 40 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 1.65 7.28 -2.39 -0.02 1.63 16 43 H 0.04 1.55 6.92 -2.38 -0.02 1.53 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.04 1.71 7.61 -2.38 -0.02 1.70 16 48 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.04 1.58 7.23 -2.38 -0.02 1.56 16 50 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.42 8.03 9.06 -74.06 -0.67 7.36 16 Total: -1.00 -67.50 406.78 -1.14 -68.64 By element: Atomic # 1 Polarization: 50.04 SS G_CDS: -1.00 Total: 49.04 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.21 Total: 5.68 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -6.17 Total: -131.01 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.20 Total: -39.08 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.50 -1.14 -68.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115655672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.049 kcal (2) G-P(sol) polarization free energy of solvation -67.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds