Wall clock time and date at job start Wed Apr 1 2020 04:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37998 * 120.82130 * 2 1 4 4 C 1.39130 * 119.26615 * 180.27723 * 3 2 1 5 5 O 1.35496 * 119.52687 * 179.70019 * 4 3 2 6 6 N 1.32440 * 120.94773 * 359.72179 * 4 3 2 7 7 C 1.31633 * 121.79947 * 359.97438 * 6 4 3 8 8 C 1.50698 * 119.68713 * 179.97438 * 7 6 4 9 9 C 1.39566 * 120.62664 * 0.02615 * 7 6 4 10 10 C 1.47620 * 120.49734 * 179.97438 * 9 7 6 11 11 O 1.21579 * 120.00061 * 89.99615 * 10 9 7 12 12 N 1.34782 * 119.99847 * 269.99745 * 10 9 7 13 13 C 1.48139 * 127.83811 * 0.02562 * 12 10 9 14 14 C 1.54394 * 104.61648 * 219.58315 * 13 12 10 15 15 H 1.09000 * 110.43110 * 95.05125 * 14 13 12 16 16 C 1.52997 * 110.34358 * 217.26124 * 14 13 12 17 17 C 1.54285 * 104.95812 * 336.13691 * 14 13 12 18 18 C 1.53001 * 110.33956 * 241.02225 * 17 14 13 19 19 C 1.52996 * 110.34256 * 118.87059 * 17 14 13 20 20 N 1.46500 * 109.47085 * 179.97438 * 19 17 14 21 21 C 1.36936 * 120.00065 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00085 * 0.02562 * 21 20 19 23 23 C 1.38824 * 119.99939 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99827 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 119.99870 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47440 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47156 * 119.99883 * 25 23 21 28 28 H 1.48500 * 109.47053 * 240.00161 * 25 23 21 29 29 C 1.48142 * 127.83223 * 180.02562 * 12 10 9 30 30 H 1.09006 * 109.47042 * 270.24654 * 1 2 3 31 31 H 1.09001 * 109.47387 * 30.24797 * 1 2 3 32 32 H 1.08997 * 109.47268 * 150.25044 * 1 2 3 33 33 H 1.08001 * 120.36795 * 0.02562 * 3 2 1 34 34 H 0.96705 * 114.00097 * 270.02564 * 5 4 3 35 35 H 1.08998 * 109.47276 * 270.02522 * 8 7 6 36 36 H 1.09001 * 109.47106 * 30.02912 * 8 7 6 37 37 H 1.09004 * 109.47405 * 150.02400 * 8 7 6 38 38 H 1.08993 * 110.40911 * 100.80248 * 13 12 10 39 39 H 1.09005 * 110.40913 * 338.36793 * 13 12 10 40 40 H 1.09002 * 109.47153 * 175.53725 * 16 14 13 41 41 H 1.09001 * 109.46832 * 55.53916 * 16 14 13 42 42 H 1.09004 * 109.47261 * 295.53897 * 16 14 13 43 43 H 1.09004 * 109.47572 * 59.99673 * 18 17 14 44 44 H 1.08993 * 109.47408 * 180.02562 * 18 17 14 45 45 H 1.09002 * 109.46867 * 299.99958 * 18 17 14 46 46 H 1.08999 * 109.47274 * 299.99377 * 19 17 14 47 47 H 1.09002 * 109.47589 * 59.99942 * 19 17 14 48 48 H 0.97000 * 120.00032 * 0.02562 * 20 19 17 49 49 H 0.96992 * 119.99503 * 180.02562 * 24 23 21 50 50 H 1.08995 * 110.41544 * 21.63265 * 29 12 10 51 51 H 1.09004 * 110.50491 * 259.24429 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0059 5 8 4.3042 2.3078 -0.0121 6 7 4.2548 -0.0066 -0.0059 7 6 3.6205 -1.1600 0.0000 8 6 4.4080 -2.4448 -0.0009 9 6 2.2256 -1.2043 0.0061 10 6 1.5172 -2.4994 0.0122 11 8 1.2300 -3.0303 1.0676 12 7 1.1887 -3.0934 -1.1522 13 6 1.4514 -2.6065 -2.5265 14 6 0.1716 -2.9577 -3.3155 15 1 -0.5063 -2.1046 -3.3402 16 6 0.5270 -3.3948 -4.7380 17 6 -0.4668 -4.1278 -2.5385 18 6 -0.5540 -5.3709 -3.4262 19 6 -1.8575 -3.7361 -2.0352 20 7 -2.4457 -4.8595 -1.3017 21 6 -3.6954 -4.7409 -0.7546 22 1 -4.2475 -3.8193 -0.8642 23 6 -4.2525 -5.8053 -0.0590 24 7 -3.5793 -6.9284 0.0750 25 14 -5.9575 -5.6436 0.6867 26 1 -6.4986 -4.2916 0.3965 27 1 -6.8541 -6.6715 0.0995 28 1 -5.8755 -5.8395 2.1564 29 6 0.4831 -4.3811 -1.3481 30 1 -0.3633 0.0044 1.0277 31 1 -0.3634 0.8877 -0.5177 32 1 -0.3633 -0.8922 -0.5099 33 1 1.6935 2.1314 0.0004 34 1 4.5032 2.6424 -0.8973 35 1 4.5931 -2.7568 -1.0287 36 1 5.3590 -2.2884 0.5082 37 1 3.8415 -3.2186 0.5173 38 1 2.3135 -3.1192 -2.9530 39 1 1.6123 -1.5284 -2.5235 40 1 -0.3771 -3.7144 -5.2564 41 1 1.2347 -4.2228 -4.6976 42 1 0.9764 -2.5584 -5.2735 43 1 0.4472 -5.6604 -3.7455 44 1 -1.0069 -6.1876 -2.8642 45 1 -1.1649 -5.1501 -4.3015 46 1 -1.7750 -2.8734 -1.3741 47 1 -2.4934 -3.4840 -2.8839 48 1 -1.9496 -5.6872 -1.2029 49 1 -3.9687 -7.6721 0.5607 50 1 -0.0865 -4.6420 -0.4562 51 1 1.1928 -5.1724 -1.5899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183472984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:33 Heat of formation + Delta-G solvation = -26.960965 kcal Electronic energy + Delta-G solvation = -32205.590275 eV Core-core repulsion = 28105.574379 eV Total energy + Delta-G solvation = -4100.015895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.21851 -40.04129 -38.39128 -37.25608 -34.79005 -34.53263 -33.30546 -31.99016 -31.55152 -29.64096 -28.31387 -28.23624 -26.89532 -25.78775 -25.62585 -23.74617 -23.14932 -21.56826 -21.18969 -19.86050 -18.67816 -18.42276 -17.63039 -17.47055 -16.81918 -16.25461 -15.85276 -15.42524 -14.90743 -14.55083 -14.36767 -14.28311 -13.96506 -13.84333 -13.63955 -13.50280 -13.37931 -13.11841 -12.96245 -12.83865 -12.68874 -12.53533 -12.34006 -12.15374 -12.05112 -11.91383 -11.85184 -11.56080 -11.45624 -11.25873 -10.98692 -10.83370 -10.54014 -10.34668 -10.19192 -10.16208 -9.90228 -9.78230 -9.61210 -9.57678 -9.04757 -8.86742 -8.63569 -6.89975 -5.74901 -3.02955 0.51282 0.86631 2.56458 2.84920 3.16905 3.35938 3.44875 3.50326 3.52614 4.17613 4.24006 4.34888 4.52854 4.60897 4.73754 4.76070 4.87297 4.94484 5.08762 5.21274 5.25991 5.29715 5.33041 5.35479 5.37322 5.42070 5.46667 5.54701 5.63663 5.66854 5.69726 5.71462 5.82389 5.86331 5.91357 5.97073 6.00056 6.08744 6.13009 6.17509 6.19889 6.29398 6.40493 6.51223 6.67348 6.77222 6.85429 7.12174 7.54346 7.61256 7.71940 8.15740 8.43986 9.55520 10.12276 10.46716 11.48067 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003161 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.079778 B = 8855.975257 C = 9706.521862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.015 3.985 3 C -0.196 4.196 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.192 3.808 8 C -0.112 4.112 9 C -0.180 4.180 10 C 0.589 3.411 11 O -0.519 6.519 12 N -0.611 5.611 13 C 0.106 3.894 14 C -0.097 4.097 15 H 0.081 0.919 16 C -0.141 4.141 17 C -0.075 4.075 18 C -0.134 4.134 19 C 0.170 3.830 20 N -0.729 5.729 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.113 3.887 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.401 0.599 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.101 0.899 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.202 14.546 -9.789 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.007 3.993 3 C -0.217 4.217 4 C 0.149 3.851 5 O -0.288 6.288 6 N -0.227 5.227 7 C 0.054 3.946 8 C -0.169 4.169 9 C -0.186 4.186 10 C 0.376 3.624 11 O -0.394 6.394 12 N -0.344 5.344 13 C -0.017 4.017 14 C -0.117 4.117 15 H 0.100 0.900 16 C -0.199 4.199 17 C -0.077 4.077 18 C -0.191 4.191 19 C 0.042 3.958 20 N -0.374 5.374 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.009 4.009 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.260 0.740 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.038 0.962 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.119 0.881 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.785 14.403 -8.448 23.676 hybrid contribution -1.592 0.099 0.038 1.596 sum 15.193 14.501 -8.410 22.624 Atomic orbital electron populations 1.20986 0.88935 1.04184 1.04227 1.20265 0.97181 0.90748 0.91143 1.21876 0.93664 0.99351 1.06790 1.19224 0.87004 0.84996 0.93849 1.84740 1.76039 1.34102 1.33909 1.66977 1.41786 0.97791 1.16172 1.21002 0.89097 0.93130 0.91392 1.20861 1.00581 0.91814 1.03662 1.20691 0.94765 0.94332 1.08772 1.17392 0.78625 0.83611 0.82777 1.90892 1.53792 1.64740 1.29963 1.48893 1.57371 1.23206 1.04921 1.22489 0.97980 0.99521 0.81702 1.22140 0.95929 0.98764 0.94878 0.90016 1.21890 1.02041 1.00928 0.95017 1.21714 0.96258 0.95333 0.94369 1.21866 1.00782 0.97139 0.99338 1.20638 0.89465 0.91568 0.94115 1.42394 1.17867 1.13042 1.64059 1.19221 0.92546 0.98406 1.26712 0.91329 1.24714 0.98589 0.96211 1.01336 1.69655 1.37628 1.03869 1.46882 0.86144 0.84265 0.77105 0.78833 1.20643 1.21934 1.21875 1.22599 0.94071 0.84008 1.00239 0.89318 0.90197 0.90126 0.83605 0.74047 0.89680 0.89637 0.89959 0.90912 0.91079 0.91596 0.92089 0.93129 0.93075 0.91220 0.92141 0.96645 0.96227 0.78079 0.93577 0.88096 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.68 36.00 0.35 -1.07 16 2 C 0.01 0.17 5.95 -103.96 -0.62 -0.45 16 3 C -0.20 -1.98 9.73 -39.34 -0.38 -2.36 16 4 C 0.33 3.62 7.74 -16.96 -0.13 3.48 16 5 O -0.48 -4.28 13.55 -18.18 -0.25 -4.52 16 6 N -0.51 -6.40 10.28 -9.20 -0.09 -6.49 16 7 C 0.19 2.43 6.82 -82.18 -0.56 1.87 16 8 C -0.11 -1.19 9.78 36.00 0.35 -0.84 16 9 C -0.18 -2.43 4.55 -104.82 -0.48 -2.91 16 10 C 0.59 9.39 4.42 -12.43 -0.05 9.33 16 11 O -0.52 -10.67 17.37 5.30 0.09 -10.58 16 12 N -0.61 -8.58 3.32 -170.50 -0.57 -9.14 16 13 C 0.11 1.12 6.45 -2.41 -0.02 1.10 16 14 C -0.10 -1.07 3.31 -89.22 -0.30 -1.37 16 15 H 0.08 0.92 7.71 -51.93 -0.40 0.52 16 16 C -0.14 -1.25 7.94 37.16 0.30 -0.95 16 17 C -0.08 -1.10 0.73 -153.11 -0.11 -1.22 16 18 C -0.13 -1.86 7.11 37.16 0.26 -1.60 16 19 C 0.17 3.27 4.94 -4.04 -0.02 3.25 16 20 N -0.73 -17.86 4.79 -59.91 -0.29 -18.15 16 21 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.36 5.50 -17.42 -0.10 -0.46 16 24 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 25 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 C 0.11 1.78 5.92 -2.41 -0.01 1.76 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.08 1.06 7.19 -51.93 -0.37 0.69 16 33 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.40 1.39 9.06 45.56 0.41 1.80 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.99 7.06 -51.93 -0.37 0.62 16 38 H 0.07 0.65 7.83 -51.93 -0.41 0.25 16 39 H 0.07 0.68 7.44 -51.93 -0.39 0.30 16 40 H 0.07 0.61 6.80 -51.93 -0.35 0.26 16 41 H 0.06 0.51 6.76 -51.93 -0.35 0.16 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.58 6.76 -51.93 -0.35 0.23 16 44 H 0.07 1.18 6.74 -51.93 -0.35 0.83 16 45 H 0.06 0.81 6.80 -51.93 -0.35 0.45 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.38 9.85 5.99 -40.82 -0.24 9.60 16 49 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.10 2.06 6.94 -51.93 -0.36 1.70 16 51 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 LS Contribution 405.85 15.07 6.12 6.12 Total: -1.00 -35.22 405.85 -8.17 -43.39 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.22 Total: 8.34 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.67 Total: 0.82 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.22 Total: -61.16 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.15 Total: -15.10 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.22 -8.17 -43.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183472984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.428 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds