Wall clock time and date at job start Wed Apr 1 2020 04:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37998 * 120.82130 * 2 1 4 4 C 1.39130 * 119.26615 * 180.27723 * 3 2 1 5 5 O 1.35496 * 119.52687 * 179.70019 * 4 3 2 6 6 N 1.32440 * 120.94773 * 359.72179 * 4 3 2 7 7 C 1.31633 * 121.79947 * 359.97438 * 6 4 3 8 8 C 1.50698 * 119.68713 * 179.97438 * 7 6 4 9 9 C 1.39566 * 120.62664 * 0.02615 * 7 6 4 10 10 C 1.47620 * 120.49734 * 179.97438 * 9 7 6 11 11 O 1.21579 * 120.00061 * 89.99615 * 10 9 7 12 12 N 1.34782 * 119.99847 * 269.99745 * 10 9 7 13 13 C 1.48139 * 127.83811 * 0.02562 * 12 10 9 14 14 C 1.54394 * 104.61648 * 219.58315 * 13 12 10 15 15 H 1.09000 * 110.43110 * 95.05125 * 14 13 12 16 16 C 1.52997 * 110.34358 * 217.26124 * 14 13 12 17 17 C 1.54285 * 104.95812 * 336.13691 * 14 13 12 18 18 C 1.53001 * 110.33956 * 241.02225 * 17 14 13 19 19 C 1.52996 * 110.34256 * 118.87059 * 17 14 13 20 20 N 1.46500 * 109.47085 * 179.97438 * 19 17 14 21 21 C 1.36936 * 120.00065 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00085 * 0.02562 * 21 20 19 23 23 C 1.38824 * 119.99939 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99827 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 119.99870 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47440 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47156 * 119.99883 * 25 23 21 28 28 H 1.48500 * 109.47053 * 240.00161 * 25 23 21 29 29 C 1.48142 * 127.83223 * 180.02562 * 12 10 9 30 30 H 1.09006 * 109.47042 * 270.24654 * 1 2 3 31 31 H 1.09001 * 109.47387 * 30.24797 * 1 2 3 32 32 H 1.08997 * 109.47268 * 150.25044 * 1 2 3 33 33 H 1.08001 * 120.36795 * 0.02562 * 3 2 1 34 34 H 0.96705 * 114.00097 * 270.02564 * 5 4 3 35 35 H 1.08998 * 109.47276 * 270.02522 * 8 7 6 36 36 H 1.09001 * 109.47106 * 30.02912 * 8 7 6 37 37 H 1.09004 * 109.47405 * 150.02400 * 8 7 6 38 38 H 1.08993 * 110.40911 * 100.80248 * 13 12 10 39 39 H 1.09005 * 110.40913 * 338.36793 * 13 12 10 40 40 H 1.09002 * 109.47153 * 175.53725 * 16 14 13 41 41 H 1.09001 * 109.46832 * 55.53916 * 16 14 13 42 42 H 1.09004 * 109.47261 * 295.53897 * 16 14 13 43 43 H 1.09004 * 109.47572 * 59.99673 * 18 17 14 44 44 H 1.08993 * 109.47408 * 180.02562 * 18 17 14 45 45 H 1.09002 * 109.46867 * 299.99958 * 18 17 14 46 46 H 1.08999 * 109.47274 * 299.99377 * 19 17 14 47 47 H 1.09002 * 109.47589 * 59.99942 * 19 17 14 48 48 H 0.97000 * 120.00032 * 0.02562 * 20 19 17 49 49 H 0.96992 * 119.99503 * 180.02562 * 24 23 21 50 50 H 1.08995 * 110.41544 * 21.63265 * 29 12 10 51 51 H 1.09004 * 110.50491 * 259.24429 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0059 5 8 4.3042 2.3078 -0.0121 6 7 4.2548 -0.0066 -0.0059 7 6 3.6205 -1.1600 0.0000 8 6 4.4080 -2.4448 -0.0009 9 6 2.2256 -1.2043 0.0061 10 6 1.5172 -2.4994 0.0122 11 8 1.2300 -3.0303 1.0676 12 7 1.1887 -3.0934 -1.1522 13 6 1.4514 -2.6065 -2.5265 14 6 0.1716 -2.9577 -3.3155 15 1 -0.5063 -2.1046 -3.3402 16 6 0.5270 -3.3948 -4.7380 17 6 -0.4668 -4.1278 -2.5385 18 6 -0.5540 -5.3709 -3.4262 19 6 -1.8575 -3.7361 -2.0352 20 7 -2.4457 -4.8595 -1.3017 21 6 -3.6954 -4.7409 -0.7546 22 1 -4.2475 -3.8193 -0.8642 23 6 -4.2525 -5.8053 -0.0590 24 7 -3.5793 -6.9284 0.0750 25 14 -5.9575 -5.6436 0.6867 26 1 -6.4986 -4.2916 0.3965 27 1 -6.8541 -6.6715 0.0995 28 1 -5.8755 -5.8395 2.1564 29 6 0.4831 -4.3811 -1.3481 30 1 -0.3633 0.0044 1.0277 31 1 -0.3634 0.8877 -0.5177 32 1 -0.3633 -0.8922 -0.5099 33 1 1.6935 2.1314 0.0004 34 1 4.5032 2.6424 -0.8973 35 1 4.5931 -2.7568 -1.0287 36 1 5.3590 -2.2884 0.5082 37 1 3.8415 -3.2186 0.5173 38 1 2.3135 -3.1192 -2.9530 39 1 1.6123 -1.5284 -2.5235 40 1 -0.3771 -3.7144 -5.2564 41 1 1.2347 -4.2228 -4.6976 42 1 0.9764 -2.5584 -5.2735 43 1 0.4472 -5.6604 -3.7455 44 1 -1.0069 -6.1876 -2.8642 45 1 -1.1649 -5.1501 -4.3015 46 1 -1.7750 -2.8734 -1.3741 47 1 -2.4934 -3.4840 -2.8839 48 1 -1.9496 -5.6872 -1.2029 49 1 -3.9687 -7.6721 0.5607 50 1 -0.0865 -4.6420 -0.4562 51 1 1.1928 -5.1724 -1.5899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183472984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:32 Heat of formation + Delta-G solvation = -54.158256 kcal Electronic energy + Delta-G solvation = -32206.769638 eV Core-core repulsion = 28105.574379 eV Total energy + Delta-G solvation = -4101.195258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.19920 -41.10676 -39.54136 -38.12954 -36.49470 -35.43699 -34.69302 -33.16380 -32.87818 -31.17646 -29.27565 -29.10736 -28.05092 -27.24052 -26.69068 -25.26423 -24.39317 -22.48648 -22.41724 -20.93605 -19.74020 -19.48086 -19.23036 -18.36682 -18.24223 -17.32825 -16.76082 -16.68371 -16.56864 -15.98620 -15.36455 -15.30058 -15.19291 -15.08453 -14.85353 -14.56085 -14.50624 -14.40337 -14.22029 -14.02289 -13.79622 -13.42115 -13.28602 -13.15309 -13.08199 -12.98711 -12.92201 -12.85886 -12.66402 -12.61865 -12.61157 -12.30698 -12.05257 -11.95968 -11.62564 -11.35999 -11.25501 -11.17147 -10.96118 -10.67556 -10.58002 -9.92411 -9.82863 -8.98268 -7.95860 -5.23120 -0.36502 -0.00988 1.36138 1.43707 1.45506 1.54668 1.78570 2.32080 2.52082 2.54305 3.24833 3.34287 3.37595 3.42587 3.55340 3.64606 3.78498 3.94008 4.12792 4.16828 4.20675 4.22029 4.34693 4.36111 4.39355 4.47462 4.52699 4.53149 4.57598 4.63802 4.72208 4.79259 4.82735 4.86288 4.89198 4.91854 4.99690 5.03257 5.05628 5.11152 5.14591 5.21859 5.31731 5.36540 5.42103 5.46564 5.48609 5.68178 6.26876 6.43178 6.54384 6.77116 6.95583 7.33538 8.10518 8.33284 9.27878 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003161 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.079778 B = 8855.975257 C = 9706.521862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.010 3.990 3 C -0.184 4.184 4 C 0.333 3.667 5 O -0.484 6.484 6 N -0.523 5.523 7 C 0.190 3.810 8 C -0.109 4.109 9 C -0.199 4.199 10 C 0.591 3.409 11 O -0.582 6.582 12 N -0.606 5.606 13 C 0.107 3.893 14 C -0.087 4.087 15 H 0.081 0.919 16 C -0.137 4.137 17 C -0.067 4.067 18 C -0.127 4.127 19 C 0.170 3.830 20 N -0.739 5.739 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.969 3.031 26 H -0.266 1.266 27 H -0.290 1.290 28 H -0.298 1.298 29 C 0.114 3.886 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.177 0.823 34 H 0.426 0.574 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.031 0.969 45 H 0.069 0.931 46 H 0.001 0.999 47 H 0.025 0.975 48 H 0.376 0.624 49 H 0.250 0.750 50 H 0.045 0.955 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.552 17.278 -12.322 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.002 3.998 3 C -0.205 4.205 4 C 0.154 3.846 5 O -0.295 6.295 6 N -0.243 5.243 7 C 0.051 3.949 8 C -0.166 4.166 9 C -0.204 4.204 10 C 0.380 3.620 11 O -0.462 6.462 12 N -0.338 5.338 13 C -0.014 4.014 14 C -0.107 4.107 15 H 0.100 0.900 16 C -0.194 4.194 17 C -0.068 4.068 18 C -0.184 4.184 19 C 0.044 3.956 20 N -0.382 5.382 21 C -0.374 4.374 22 H 0.089 0.911 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.191 1.191 27 H -0.217 1.217 28 H -0.225 1.225 29 C -0.008 4.008 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.195 0.805 34 H 0.289 0.711 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.018 0.982 47 H 0.043 0.957 48 H 0.209 0.791 49 H 0.059 0.941 50 H 0.063 0.937 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.152 17.199 -11.073 27.348 hybrid contribution -1.950 -0.620 0.801 2.197 sum 16.203 16.580 -10.272 25.356 Atomic orbital electron populations 1.20964 0.88910 1.04518 1.03612 1.20370 0.97296 0.90899 0.91240 1.22086 0.93355 0.99728 1.05331 1.19432 0.87512 0.85163 0.92499 1.84695 1.75708 1.32988 1.36152 1.67037 1.42088 0.98177 1.17039 1.21144 0.88765 0.93831 0.91147 1.20870 1.00265 0.90616 1.04890 1.20540 0.95225 0.93375 1.11301 1.17805 0.77884 0.84125 0.82215 1.90847 1.56553 1.66559 1.32279 1.48952 1.56180 1.22424 1.06203 1.22763 0.98577 1.00917 0.79173 1.22110 0.95724 0.96825 0.96030 0.90039 1.21872 1.02330 1.02276 0.92915 1.21605 0.93283 0.97513 0.94447 1.21822 1.02601 0.95262 0.98720 1.20769 0.92211 0.89446 0.93183 1.42584 1.17128 1.14134 1.64370 1.19612 0.93648 0.98206 1.25898 0.91092 1.25519 1.02411 0.96180 1.02619 1.69811 1.39263 1.04548 1.48183 0.85128 0.80043 0.77639 0.77308 1.19084 1.21663 1.22510 1.22447 0.94430 0.85609 0.98354 0.90509 0.86836 0.92679 0.80549 0.71131 0.87428 0.88831 0.92072 0.88102 0.89428 0.91945 0.91065 0.90659 0.89733 0.95015 0.91206 0.98158 0.95726 0.79086 0.94093 0.93657 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.68 71.23 0.69 -2.02 16 2 C 0.01 0.22 5.95 -19.44 -0.12 0.10 16 3 C -0.18 -3.19 9.73 22.43 0.22 -2.98 16 4 C 0.33 6.40 7.74 84.82 0.66 7.06 16 5 O -0.48 -6.96 13.55 -87.96 -1.19 -8.15 16 6 N -0.52 -12.14 10.28 -295.89 -3.04 -15.18 16 7 C 0.19 4.59 6.82 42.91 0.29 4.88 16 8 C -0.11 -2.25 9.78 71.24 0.70 -1.56 16 9 C -0.20 -5.31 4.55 -19.99 -0.09 -5.40 16 10 C 0.59 19.62 4.42 86.72 0.38 20.00 16 11 O -0.58 -25.93 17.37 -3.97 -0.07 -25.99 16 12 N -0.61 -17.17 3.32 -811.62 -2.69 -19.86 16 13 C 0.11 1.98 6.45 86.54 0.56 2.54 16 14 C -0.09 -1.71 3.31 -9.89 -0.03 -1.75 16 15 H 0.08 1.64 7.71 -2.39 -0.02 1.63 16 16 C -0.14 -1.85 7.94 71.98 0.57 -1.28 16 17 C -0.07 -1.95 0.73 -51.28 -0.04 -1.99 16 18 C -0.13 -3.43 7.11 71.98 0.51 -2.91 16 19 C 0.17 6.75 4.94 86.38 0.43 7.17 16 20 N -0.74 -37.93 4.79 -343.45 -1.64 -39.57 16 21 C -0.24 -13.85 9.99 84.04 0.84 -13.01 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 24 N -0.97 -60.66 13.06 21.66 0.28 -60.38 16 25 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 29 C 0.11 3.74 5.92 86.54 0.51 4.25 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.11 1.63 8.10 -2.39 -0.02 1.61 16 32 H 0.05 1.48 7.19 -2.39 -0.02 1.47 16 33 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.43 1.31 9.06 -74.05 -0.67 0.63 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.53 7.06 -2.38 -0.02 1.51 16 38 H 0.10 1.38 7.83 -2.39 -0.02 1.36 16 39 H 0.09 1.40 7.44 -2.38 -0.02 1.38 16 40 H 0.06 0.93 6.80 -2.39 -0.02 0.92 16 41 H 0.07 0.85 6.76 -2.39 -0.02 0.83 16 42 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.08 1.71 6.76 -2.39 -0.02 1.70 16 44 H 0.03 1.10 6.74 -2.39 -0.02 1.08 16 45 H 0.07 1.75 6.80 -2.39 -0.02 1.74 16 46 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.38 20.46 5.99 -92.71 -0.55 19.91 16 49 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 50 H 0.04 2.01 6.94 -2.39 -0.02 1.99 16 51 H 0.09 2.50 7.84 -2.38 -0.02 2.48 16 Total: -1.00 -81.95 405.85 -0.04 -81.99 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.26 Total: 28.35 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.55 Total: 9.16 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -7.09 Total: -134.99 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.26 Total: -34.15 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -81.95 -0.04 -81.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183472984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.831 kcal (2) G-P(sol) polarization free energy of solvation -81.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds