Wall clock time and date at job start Wed Apr 1 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40190 * 120.36694 * 2 1 4 4 C 1.35353 * 119.94730 * 179.76385 * 3 2 1 5 5 N 1.35761 * 120.70187 * 0.51868 * 4 3 2 6 6 C 1.46498 * 119.62538 * 179.75754 * 5 4 3 7 7 C 1.50696 * 109.46747 * 269.72129 * 6 5 4 8 8 O 1.21280 * 120.00520 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99819 * 179.97438 * 7 6 5 10 10 C 1.46929 * 120.62687 * 0.02562 * 9 7 6 11 11 C 1.53196 * 108.77486 * 126.36877 * 10 9 7 12 12 C 1.53037 * 109.31315 * 54.63188 * 11 10 9 13 13 H 1.09004 * 109.46115 * 58.65830 * 12 11 10 14 14 C 1.52998 * 109.46185 * 178.62778 * 12 11 10 15 15 N 1.46501 * 109.46883 * 295.00100 * 14 12 11 16 16 C 1.36939 * 119.99928 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99708 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00220 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00293 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47190 * 90.00216 * 20 18 16 22 22 H 1.48495 * 109.47427 * 210.00165 * 20 18 16 23 23 H 1.48503 * 109.46944 * 330.00234 * 20 18 16 24 24 C 1.53043 * 109.53875 * 298.63222 * 12 11 10 25 25 H 1.09003 * 109.49674 * 181.31610 * 24 12 11 26 26 C 1.52990 * 109.49766 * 301.41530 * 24 12 11 27 27 C 1.46918 * 120.63391 * 179.97438 * 9 7 6 28 28 C 1.34660 * 120.74875 * 359.47537 * 5 4 3 29 29 O 1.22057 * 119.98845 * 180.27950 * 28 5 4 30 30 C 1.36393 * 120.36366 * 180.02562 * 2 1 3 31 31 H 1.09010 * 109.47379 * 269.98179 * 1 2 3 32 32 H 1.09003 * 109.47051 * 29.97773 * 1 2 3 33 33 H 1.08997 * 109.47279 * 149.97973 * 1 2 3 34 34 H 1.08000 * 120.03010 * 0.04362 * 3 2 1 35 35 H 1.07996 * 119.64750 * 180.27104 * 4 3 2 36 36 H 1.09005 * 109.46977 * 149.72291 * 6 5 4 37 37 H 1.09001 * 109.47211 * 29.72430 * 6 5 4 38 38 H 1.08998 * 109.59209 * 6.57692 * 10 9 7 39 39 H 1.09003 * 109.58217 * 246.14973 * 10 9 7 40 40 H 1.08998 * 109.49640 * 174.58442 * 11 10 9 41 41 H 1.08994 * 109.49723 * 294.64754 * 11 10 9 42 42 H 1.08997 * 109.47082 * 54.99600 * 14 12 11 43 43 H 1.08997 * 109.47279 * 175.00254 * 14 12 11 44 44 H 0.97004 * 120.00525 * 359.97438 * 15 14 12 45 45 H 0.96998 * 119.99984 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.46999 * 60.00050 * 26 24 12 47 47 H 1.09000 * 109.47347 * 179.97438 * 26 24 12 48 48 H 1.08992 * 109.47474 * 299.99634 * 26 24 12 49 49 H 1.09008 * 109.58859 * 113.84030 * 27 9 7 50 50 H 1.09002 * 109.58786 * 353.42232 * 27 9 7 51 51 H 1.08001 * 120.35462 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0273 -0.0009 6 6 5.7187 0.0442 -0.0008 7 6 6.2209 0.0499 -1.4216 8 8 5.4329 0.0413 -2.3435 9 7 7.5460 0.0656 -1.6679 10 6 8.5129 0.0768 -0.5617 11 6 9.4987 -1.0795 -0.7568 12 6 10.1319 -0.9758 -2.1461 13 1 10.6406 -0.0166 -2.2427 14 6 11.1425 -2.1095 -2.3317 15 7 12.2491 -1.9366 -1.3873 16 6 13.2801 -2.8376 -1.3684 17 1 13.2773 -3.6758 -2.0494 18 6 14.3290 -2.6735 -0.4741 19 7 14.3322 -1.6522 0.3562 20 14 15.7358 -3.9021 -0.4487 21 1 16.7964 -3.4597 -1.3893 22 1 16.2954 -3.9858 0.9242 23 1 15.2341 -5.2376 -0.8610 24 6 9.0419 -1.0849 -3.2148 25 1 9.4962 -1.0345 -4.2044 26 6 8.3045 -2.4162 -3.0581 27 6 8.0510 0.0708 -3.0476 28 6 3.6017 -1.1508 -0.0008 29 8 4.2311 -2.1966 -0.0008 30 6 2.1965 -1.1768 -0.0005 31 1 -0.3634 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6822 2.1486 0.0007 35 1 4.1103 2.1343 0.0093 36 1 6.0922 -0.8416 0.5130 37 1 6.0718 0.9382 0.5130 38 1 7.9868 -0.0473 0.3848 39 1 9.0548 1.0225 -0.5596 40 1 10.2781 -1.0252 0.0033 41 1 8.9691 -2.0280 -0.6677 42 1 10.6535 -3.0659 -2.1471 43 1 11.5281 -2.0893 -3.3509 44 1 12.2515 -1.1839 -0.7754 45 1 15.0649 -1.5377 0.9814 46 1 7.8493 -2.4651 -2.0688 47 1 7.5280 -2.4933 -3.8191 48 1 9.0104 -3.2385 -3.1743 49 1 8.5551 1.0162 -3.2487 50 1 7.2200 -0.0572 -3.7413 51 1 1.6682 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185234029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:09 Heat of formation + Delta-G solvation = -26.301829 kcal Electronic energy + Delta-G solvation = -31106.083379 eV Core-core repulsion = 27006.096066 eV Total energy + Delta-G solvation = -4099.987313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.76241 -40.29591 -38.14264 -37.21833 -35.52533 -35.02090 -33.48898 -31.86956 -30.78074 -30.35244 -29.72111 -27.82678 -27.03766 -25.96400 -23.97075 -23.70085 -23.05150 -22.06970 -21.38938 -20.16117 -18.43396 -17.88380 -17.78214 -17.54104 -16.95850 -16.27266 -15.93136 -15.62713 -15.24676 -14.98223 -14.61537 -14.45528 -14.26082 -14.08896 -13.94421 -13.79583 -13.65373 -13.48764 -13.07431 -12.92912 -12.67005 -12.55046 -12.52062 -12.36253 -12.18910 -12.02917 -11.91553 -11.56735 -11.38401 -11.05481 -10.93822 -10.76983 -10.47566 -10.37267 -10.23002 -10.15565 -10.13106 -9.98771 -9.70267 -9.64471 -8.86427 -8.68984 -8.20232 -6.91111 -5.77588 -3.05193 0.56602 1.65382 2.19295 2.36208 2.88604 3.43293 3.44902 3.48847 3.50217 4.17527 4.18894 4.28945 4.42865 4.58401 4.65297 4.74875 4.80448 4.91610 4.92710 4.98733 5.06172 5.08704 5.16888 5.20495 5.24186 5.39030 5.46813 5.51447 5.59302 5.66674 5.70791 5.77118 5.78279 5.82638 5.86244 6.04003 6.08786 6.09676 6.18925 6.25132 6.30165 6.39211 6.44498 6.47211 6.65007 6.80571 6.82640 6.94431 7.21198 7.70391 7.84878 7.93925 8.42086 9.53292 10.11361 10.46038 11.45450 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002087 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.748707 B =13414.228060 C =13686.495348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.014 3.986 3 C -0.231 4.231 4 C 0.145 3.855 5 N -0.482 5.482 6 C 0.070 3.930 7 C 0.505 3.495 8 O -0.534 6.534 9 N -0.600 5.600 10 C 0.103 3.897 11 C -0.129 4.129 12 C -0.088 4.088 13 H 0.072 0.928 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.098 4.098 25 H 0.082 0.918 26 C -0.145 4.145 27 C 0.118 3.882 28 C 0.521 3.479 29 O -0.548 6.548 30 C -0.247 4.247 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.022 0.978 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.238 11.055 0.148 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.254 4.254 4 C 0.018 3.982 5 N -0.192 5.192 6 C -0.056 4.056 7 C 0.291 3.709 8 O -0.411 6.411 9 N -0.333 5.333 10 C -0.020 4.020 11 C -0.167 4.167 12 C -0.107 4.107 13 H 0.090 0.910 14 C 0.030 3.970 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.118 4.118 25 H 0.100 0.900 26 C -0.202 4.202 27 C -0.004 4.004 28 C 0.323 3.677 29 O -0.430 6.430 30 C -0.268 4.268 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.108 0.892 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.111 10.206 -0.379 28.038 hybrid contribution 1.040 -0.314 0.259 1.116 sum -25.072 9.892 -0.120 26.953 Atomic orbital electron populations 1.20924 0.90389 1.03553 1.03034 1.20193 0.96745 0.92668 0.89382 1.20499 0.92316 0.98892 1.13688 1.21873 0.93616 0.89475 0.93220 1.45073 1.07189 1.07303 1.59655 1.21880 0.79602 1.07328 0.96759 1.20556 0.82573 0.76819 0.90981 1.90724 1.54814 1.49875 1.45699 1.48073 1.04824 1.72245 1.08180 1.21956 0.91104 1.00471 0.88443 1.21984 0.98348 0.97707 0.98700 1.21297 0.95128 1.00601 0.93632 0.90989 1.20716 0.88139 0.94734 0.93383 1.42372 1.21576 1.31482 1.42164 1.19235 0.98258 1.04035 1.15259 0.91287 1.24716 0.98970 0.98459 0.98929 1.69646 1.33336 1.30688 1.24715 0.86196 0.82589 0.80688 0.76780 1.21782 1.21798 1.20801 1.21472 0.95441 0.95000 0.99883 0.89962 1.21856 0.99814 0.96815 1.01730 1.21702 0.97886 0.98469 0.82307 1.17101 0.89363 0.82460 0.78741 1.90981 1.69084 1.30207 1.52685 1.21924 0.92246 0.99574 1.13095 0.90130 0.90794 0.90827 0.83779 0.82267 0.85083 0.86108 0.90240 0.90592 0.89188 0.91119 0.95998 0.96468 0.78340 0.93587 0.92530 0.93407 0.91889 0.91334 0.89231 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.03 36.01 0.36 -0.25 16 2 C 0.01 0.11 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.58 9.71 -39.88 -0.39 -1.97 16 4 C 0.15 1.09 10.28 -16.84 -0.17 0.92 16 5 N -0.48 -5.21 2.07 -121.06 -0.25 -5.46 16 6 C 0.07 0.68 4.16 -5.20 -0.02 0.66 16 7 C 0.50 6.41 7.76 -10.98 -0.09 6.32 16 8 O -0.53 -8.71 15.84 5.56 0.09 -8.62 16 9 N -0.60 -7.01 2.41 -172.79 -0.42 -7.42 16 10 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 11 C -0.13 -1.81 4.90 -26.61 -0.13 -1.94 16 12 C -0.09 -1.32 1.96 -90.58 -0.18 -1.50 16 13 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.16 3.09 5.18 -4.04 -0.02 3.07 16 15 N -0.73 -17.98 5.32 -59.91 -0.32 -18.30 16 16 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 C -0.10 -1.29 2.72 -90.52 -0.25 -1.54 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 C -0.14 -2.06 8.38 37.15 0.31 -1.74 16 27 C 0.12 1.43 5.82 -3.73 -0.02 1.41 16 28 C 0.52 7.23 7.40 -15.44 -0.11 7.11 16 29 O -0.55 -9.76 16.64 4.87 0.08 -9.68 16 30 C -0.25 -2.73 9.65 -39.38 -0.38 -3.11 16 31 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 33 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.16 0.64 8.03 -52.49 -0.42 0.21 16 36 H 0.13 1.38 6.94 -51.93 -0.36 1.02 16 37 H 0.12 0.65 7.81 -51.93 -0.41 0.24 16 38 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.44 7.15 -51.93 -0.37 1.07 16 41 H 0.07 1.06 6.34 -51.93 -0.33 0.74 16 42 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 9.70 6.85 -40.82 -0.28 9.42 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.06 0.86 5.97 -51.93 -0.31 0.55 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.92 6.58 -51.93 -0.34 0.58 16 49 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 50 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 51 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -36.82 402.70 -9.05 -45.87 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.03 Total: 6.47 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.97 Total: 0.73 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.26 Total: -58.23 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.17 Total: -18.30 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.82 -9.05 -45.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185234029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.570 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds