Wall clock time and date at job start Wed Apr 1 2020 05:29:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.40190 * 120.36694 * 2 1
4 4 C 1.35353 * 119.94730 * 179.76385 * 3 2 1
5 5 N 1.35761 * 120.70187 * 0.51868 * 4 3 2
6 6 C 1.46498 * 119.62538 * 179.75754 * 5 4 3
7 7 C 1.50696 * 109.46747 * 269.72129 * 6 5 4
8 8 O 1.21280 * 120.00520 * 0.02562 * 7 6 5
9 9 N 1.34783 * 119.99819 * 179.97438 * 7 6 5
10 10 C 1.46929 * 120.62687 * 0.02562 * 9 7 6
11 11 C 1.53196 * 108.77486 * 126.36877 * 10 9 7
12 12 C 1.53037 * 109.31315 * 54.63188 * 11 10 9
13 13 H 1.09004 * 109.46115 * 58.65830 * 12 11 10
14 14 C 1.52998 * 109.46185 * 178.62778 * 12 11 10
15 15 N 1.46501 * 109.46883 * 295.00100 * 14 12 11
16 16 C 1.36939 * 119.99928 * 179.97438 * 15 14 12
17 17 H 1.08001 * 119.99708 * 359.97438 * 16 15 14
18 18 C 1.38810 * 120.00220 * 179.97438 * 16 15 14
19 19 N 1.31619 * 119.99896 * 0.02562 * 18 16 15
20 20 Si 1.86798 * 120.00293 * 180.02562 * 18 16 15
21 21 H 1.48500 * 109.47190 * 90.00216 * 20 18 16
22 22 H 1.48495 * 109.47427 * 210.00165 * 20 18 16
23 23 H 1.48503 * 109.46944 * 330.00234 * 20 18 16
24 24 C 1.53043 * 109.53875 * 298.63222 * 12 11 10
25 25 H 1.09003 * 109.49674 * 181.31610 * 24 12 11
26 26 C 1.52990 * 109.49766 * 301.41530 * 24 12 11
27 27 C 1.46918 * 120.63391 * 179.97438 * 9 7 6
28 28 C 1.34660 * 120.74875 * 359.47537 * 5 4 3
29 29 O 1.22057 * 119.98845 * 180.27950 * 28 5 4
30 30 C 1.36393 * 120.36366 * 180.02562 * 2 1 3
31 31 H 1.09010 * 109.47379 * 269.98179 * 1 2 3
32 32 H 1.09003 * 109.47051 * 29.97773 * 1 2 3
33 33 H 1.08997 * 109.47279 * 149.97973 * 1 2 3
34 34 H 1.08000 * 120.03010 * 0.04362 * 3 2 1
35 35 H 1.07996 * 119.64750 * 180.27104 * 4 3 2
36 36 H 1.09005 * 109.46977 * 149.72291 * 6 5 4
37 37 H 1.09001 * 109.47211 * 29.72430 * 6 5 4
38 38 H 1.08998 * 109.59209 * 6.57692 * 10 9 7
39 39 H 1.09003 * 109.58217 * 246.14973 * 10 9 7
40 40 H 1.08998 * 109.49640 * 174.58442 * 11 10 9
41 41 H 1.08994 * 109.49723 * 294.64754 * 11 10 9
42 42 H 1.08997 * 109.47082 * 54.99600 * 14 12 11
43 43 H 1.08997 * 109.47279 * 175.00254 * 14 12 11
44 44 H 0.97004 * 120.00525 * 359.97438 * 15 14 12
45 45 H 0.96998 * 119.99984 * 179.97438 * 19 18 16
46 46 H 1.09005 * 109.46999 * 60.00050 * 26 24 12
47 47 H 1.09000 * 109.47347 * 179.97438 * 26 24 12
48 48 H 1.08992 * 109.47474 * 299.99634 * 26 24 12
49 49 H 1.09008 * 109.58859 * 113.84030 * 27 9 7
50 50 H 1.09002 * 109.58786 * 353.42232 * 27 9 7
51 51 H 1.08001 * 120.35462 * 0.02562 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2157 1.2096 0.0000
4 6 3.5692 1.1997 0.0048
5 7 4.2538 0.0273 -0.0009
6 6 5.7187 0.0442 -0.0008
7 6 6.2209 0.0499 -1.4216
8 8 5.4329 0.0413 -2.3435
9 7 7.5460 0.0656 -1.6679
10 6 8.5129 0.0768 -0.5617
11 6 9.4987 -1.0795 -0.7568
12 6 10.1319 -0.9758 -2.1461
13 1 10.6406 -0.0166 -2.2427
14 6 11.1425 -2.1095 -2.3317
15 7 12.2491 -1.9366 -1.3873
16 6 13.2801 -2.8376 -1.3684
17 1 13.2773 -3.6758 -2.0494
18 6 14.3290 -2.6735 -0.4741
19 7 14.3322 -1.6522 0.3562
20 14 15.7358 -3.9021 -0.4487
21 1 16.7964 -3.4597 -1.3893
22 1 16.2954 -3.9858 0.9242
23 1 15.2341 -5.2376 -0.8610
24 6 9.0419 -1.0849 -3.2148
25 1 9.4962 -1.0345 -4.2044
26 6 8.3045 -2.4162 -3.0581
27 6 8.0510 0.0708 -3.0476
28 6 3.6017 -1.1508 -0.0008
29 8 4.2311 -2.1966 -0.0008
30 6 2.1965 -1.1768 -0.0005
31 1 -0.3634 -0.0003 1.0277
32 1 -0.3633 0.8902 -0.5135
33 1 -0.3634 -0.8898 -0.5141
34 1 1.6822 2.1486 0.0007
35 1 4.1103 2.1343 0.0093
36 1 6.0922 -0.8416 0.5130
37 1 6.0718 0.9382 0.5130
38 1 7.9868 -0.0473 0.3848
39 1 9.0548 1.0225 -0.5596
40 1 10.2781 -1.0252 0.0033
41 1 8.9691 -2.0280 -0.6677
42 1 10.6535 -3.0659 -2.1471
43 1 11.5281 -2.0893 -3.3509
44 1 12.2515 -1.1839 -0.7754
45 1 15.0649 -1.5377 0.9814
46 1 7.8493 -2.4651 -2.0688
47 1 7.5280 -2.4933 -3.8191
48 1 9.0104 -3.2385 -3.1743
49 1 8.5551 1.0162 -3.2487
50 1 7.2200 -0.0572 -3.7413
51 1 1.6682 -2.1189 -0.0014
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001185234029.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:08
Heat of formation + Delta-G solvation = -49.712740 kcal
Electronic energy + Delta-G solvation = -31107.098552 eV
Core-core repulsion = 27006.096066 eV
Total energy + Delta-G solvation = -4101.002486 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-42.58320 -41.30275 -39.29217 -38.10953 -36.61363 -36.24201 -34.93067 -33.30869
-31.97814 -31.44023 -30.50387 -28.65075 -28.51437 -26.99716 -25.44262 -24.65561
-24.21015 -23.14971 -22.52633 -21.18420 -19.70173 -19.08347 -18.58097 -18.52909
-18.35541 -17.04954 -16.89358 -16.83774 -16.53817 -16.13012 -15.85348 -15.54972
-15.40298 -15.18028 -15.04367 -14.99055 -14.75914 -14.40177 -14.15823 -13.98477
-13.77484 -13.66406 -13.50545 -13.33153 -13.03954 -12.99507 -12.87294 -12.82605
-12.72192 -12.48475 -12.45999 -12.19878 -12.07549 -11.92570 -11.59117 -11.48352
-11.26034 -11.13960 -11.09685 -10.90093 -10.53969 -9.70104 -8.98642 -8.96570
-7.95090 -5.22156 -0.11716 0.92125 1.37491 1.45787 1.46938 1.47640
1.56101 2.00984 2.55739 2.65789 3.31194 3.38238 3.61043 3.69064
3.71795 3.74845 3.80586 3.86367 4.02858 4.04966 4.13320 4.20104
4.29607 4.33426 4.38229 4.39908 4.45389 4.61648 4.66967 4.73203
4.76814 4.79852 4.82752 4.83826 4.90275 4.95544 5.05568 5.10459
5.14130 5.16450 5.17896 5.24016 5.30594 5.47235 5.49278 5.51910
5.58778 5.67056 6.05784 6.26082 6.28436 6.93484 7.00444 7.35247
8.11309 8.36509 9.28034
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.022169 B = 0.002087 C = 0.002045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1262.748707 B =13414.228060 C =13686.495348
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.034 3.966
3 C -0.229 4.229
4 C 0.140 3.860
5 N -0.483 5.483
6 C 0.068 3.932
7 C 0.503 3.497
8 O -0.575 6.575
9 N -0.597 5.597
10 C 0.109 3.891
11 C -0.126 4.126
12 C -0.076 4.076
13 H 0.077 0.923
14 C 0.158 3.842
15 N -0.740 5.740
16 C -0.246 4.246
17 H 0.068 0.932
18 C -0.072 4.072
19 N -0.964 5.964
20 Si 0.969 3.031
21 H -0.287 1.287
22 H -0.293 1.293
23 H -0.275 1.275
24 C -0.090 4.090
25 H 0.093 0.907
26 C -0.139 4.139
27 C 0.122 3.878
28 C 0.501 3.499
29 O -0.613 6.613
30 C -0.293 4.293
31 H 0.097 0.903
32 H 0.095 0.905
33 H 0.071 0.929
34 H 0.185 0.815
35 H 0.204 0.796
36 H 0.119 0.881
37 H 0.175 0.825
38 H 0.106 0.894
39 H 0.099 0.901
40 H 0.069 0.931
41 H 0.053 0.947
42 H 0.013 0.987
43 H 0.015 0.985
44 H 0.377 0.623
45 H 0.252 0.748
46 H 0.041 0.959
47 H 0.049 0.951
48 H 0.052 0.948
49 H 0.091 0.909
50 H 0.079 0.921
51 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.470 14.013 0.344 30.840
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.030 3.970
3 C -0.251 4.251
4 C 0.014 3.986
5 N -0.192 5.192
6 C -0.056 4.056
7 C 0.291 3.709
8 O -0.455 6.455
9 N -0.329 5.329
10 C -0.013 4.013
11 C -0.164 4.164
12 C -0.095 4.095
13 H 0.096 0.904
14 C 0.031 3.969
15 N -0.383 5.383
16 C -0.378 4.378
17 H 0.086 0.914
18 C -0.264 4.264
19 N -0.615 5.615
20 Si 0.798 3.202
21 H -0.214 1.214
22 H -0.220 1.220
23 H -0.200 1.200
24 C -0.110 4.110
25 H 0.111 0.889
26 C -0.197 4.197
27 C -0.001 4.001
28 C 0.306 3.694
29 O -0.501 6.501
30 C -0.315 4.315
31 H 0.116 0.884
32 H 0.114 0.886
33 H 0.090 0.910
34 H 0.202 0.798
35 H 0.221 0.779
36 H 0.137 0.863
37 H 0.192 0.808
38 H 0.124 0.876
39 H 0.118 0.882
40 H 0.088 0.912
41 H 0.072 0.928
42 H 0.031 0.969
43 H 0.033 0.967
44 H 0.210 0.790
45 H 0.060 0.940
46 H 0.060 0.940
47 H 0.068 0.932
48 H 0.071 0.929
49 H 0.110 0.890
50 H 0.097 0.903
51 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -27.368 13.198 -0.199 30.384
hybrid contribution 1.329 -1.182 0.151 1.786
sum -26.038 12.015 -0.048 28.677
Atomic orbital electron populations
1.21041 0.87963 1.04564 1.04348 1.20645 0.98528 0.92074 0.85767
1.21066 0.92383 0.99778 1.11917 1.22719 0.94441 0.89619 0.91833
1.45098 1.07751 1.07565 1.58754 1.22075 0.79267 1.09261 0.95027
1.21033 0.82380 0.75751 0.91766 1.90703 1.55772 1.51815 1.47192
1.48115 1.04884 1.71589 1.08319 1.22019 0.90411 0.99690 0.89171
1.21874 0.98446 0.98760 0.97319 1.21172 0.94546 0.98759 0.95043
0.90435 1.20834 0.87810 0.96263 0.91982 1.42515 1.22139 1.30735
1.42889 1.19579 0.99043 1.04341 1.14809 0.91361 1.25473 1.01467
1.00407 0.99086 1.69779 1.33983 1.32262 1.25458 0.85210 0.79633
0.78874 0.76461 1.21374 1.21995 1.20002 1.21409 0.94983 0.94904
0.99666 0.88917 1.21785 0.99602 0.97377 1.00893 1.21660 0.97137
0.98708 0.82554 1.17548 0.90355 0.82693 0.78777 1.90920 1.70275
1.32380 1.56551 1.21879 0.91481 1.00836 1.17281 0.88420 0.88578
0.91036 0.79820 0.77930 0.86288 0.80815 0.87552 0.88247 0.91230
0.92818 0.96936 0.96722 0.78980 0.93958 0.93983 0.93234 0.92886
0.89040 0.90284 0.84459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.90 10.03 71.24 0.71 -0.19 16
2 C 0.03 0.49 5.89 -19.82 -0.12 0.38 16
3 C -0.23 -2.32 9.71 22.08 0.21 -2.10 16
4 C 0.14 1.64 10.28 83.42 0.86 2.49 16
5 N -0.48 -9.92 2.07 -655.07 -1.36 -11.28 16
6 C 0.07 1.22 4.16 85.63 0.36 1.58 16
7 C 0.50 12.16 7.76 87.65 0.68 12.84 16
8 O -0.58 -18.53 15.84 -3.03 -0.05 -18.58 16
9 N -0.60 -12.92 2.41 -818.96 -1.97 -14.89 16
10 C 0.11 2.04 6.34 86.36 0.55 2.58 16
11 C -0.13 -3.49 4.90 30.67 0.15 -3.34 16
12 C -0.08 -2.26 1.96 -10.77 -0.02 -2.28 16
13 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
14 C 0.16 6.24 5.18 86.38 0.45 6.69 16
15 N -0.74 -36.82 5.32 -343.46 -1.83 -38.65 16
16 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16
17 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16
18 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16
19 N -0.96 -57.76 13.06 21.65 0.28 -57.47 16
20 Si 0.97 46.28 29.55 68.60 2.03 48.31 16
21 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16
22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16
23 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16
24 C -0.09 -2.30 2.72 -10.73 -0.03 -2.33 16
25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
26 C -0.14 -4.05 8.38 71.98 0.60 -3.44 16
27 C 0.12 2.74 5.82 86.35 0.50 3.24 16
28 C 0.50 14.59 7.40 84.82 0.63 15.22 16
29 O -0.61 -23.82 16.64 -5.50 -0.09 -23.92 16
30 C -0.29 -6.81 9.65 22.40 0.22 -6.60 16
31 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16
32 H 0.10 0.33 8.10 -2.39 -0.02 0.31 16
33 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16
34 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16
35 H 0.20 0.50 8.03 -2.91 -0.02 0.48 16
36 H 0.12 2.49 6.94 -2.38 -0.02 2.48 16
37 H 0.17 1.11 7.81 -2.39 -0.02 1.09 16
38 H 0.11 1.45 5.93 -2.39 -0.01 1.44 16
39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
40 H 0.07 2.24 7.15 -2.39 -0.02 2.23 16
41 H 0.05 1.67 6.34 -2.39 -0.02 1.65 16
42 H 0.01 0.53 6.74 -2.39 -0.02 0.51 16
43 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16
44 H 0.38 19.41 6.85 -92.71 -0.63 18.77 16
45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16
46 H 0.04 1.33 5.97 -2.38 -0.01 1.32 16
47 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
48 H 0.05 1.61 6.58 -2.39 -0.02 1.60 16
49 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16
50 H 0.08 2.01 7.01 -2.39 -0.02 1.99 16
51 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16
Total: -1.00 -85.14 402.70 4.38 -80.77
By element:
Atomic # 1 Polarization: 27.25 SS G_CDS: 0.30 Total: 27.55 kcal
Atomic # 6 Polarization: 1.10 SS G_CDS: 7.06 Total: 8.16 kcal
Atomic # 7 Polarization: -117.42 SS G_CDS: -4.88 Total: -122.30 kcal
Atomic # 8 Polarization: -42.35 SS G_CDS: -0.14 Total: -42.49 kcal
Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal
Total: -85.14 4.38 -80.77 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185234029.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.056 kcal
(2) G-P(sol) polarization free energy of solvation -85.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.088 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.768 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds