Wall clock time and date at job start Wed Apr 1 2020 05:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40190 * 120.36694 * 2 1 4 4 C 1.35353 * 119.94730 * 179.76385 * 3 2 1 5 5 N 1.35761 * 120.70187 * 0.51868 * 4 3 2 6 6 C 1.46498 * 119.62538 * 179.75754 * 5 4 3 7 7 C 1.50696 * 109.46747 * 269.72129 * 6 5 4 8 8 O 1.21280 * 120.00520 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99819 * 179.97438 * 7 6 5 10 10 C 1.46929 * 120.62687 * 0.02562 * 9 7 6 11 11 C 1.53196 * 108.77486 * 126.36877 * 10 9 7 12 12 C 1.53037 * 109.31315 * 54.63188 * 11 10 9 13 13 H 1.09004 * 109.46115 * 58.65830 * 12 11 10 14 14 C 1.52998 * 109.46185 * 178.62778 * 12 11 10 15 15 N 1.46501 * 109.46883 * 295.00100 * 14 12 11 16 16 C 1.36939 * 119.99928 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99708 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00220 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00293 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47190 * 90.00216 * 20 18 16 22 22 H 1.48495 * 109.47427 * 210.00165 * 20 18 16 23 23 H 1.48503 * 109.46944 * 330.00234 * 20 18 16 24 24 C 1.53043 * 109.53875 * 298.63222 * 12 11 10 25 25 H 1.09003 * 109.49674 * 181.31610 * 24 12 11 26 26 C 1.52990 * 109.49766 * 301.41530 * 24 12 11 27 27 C 1.46918 * 120.63391 * 179.97438 * 9 7 6 28 28 C 1.34660 * 120.74875 * 359.47537 * 5 4 3 29 29 O 1.22057 * 119.98845 * 180.27950 * 28 5 4 30 30 C 1.36393 * 120.36366 * 180.02562 * 2 1 3 31 31 H 1.09010 * 109.47379 * 269.98179 * 1 2 3 32 32 H 1.09003 * 109.47051 * 29.97773 * 1 2 3 33 33 H 1.08997 * 109.47279 * 149.97973 * 1 2 3 34 34 H 1.08000 * 120.03010 * 0.04362 * 3 2 1 35 35 H 1.07996 * 119.64750 * 180.27104 * 4 3 2 36 36 H 1.09005 * 109.46977 * 149.72291 * 6 5 4 37 37 H 1.09001 * 109.47211 * 29.72430 * 6 5 4 38 38 H 1.08998 * 109.59209 * 6.57692 * 10 9 7 39 39 H 1.09003 * 109.58217 * 246.14973 * 10 9 7 40 40 H 1.08998 * 109.49640 * 174.58442 * 11 10 9 41 41 H 1.08994 * 109.49723 * 294.64754 * 11 10 9 42 42 H 1.08997 * 109.47082 * 54.99600 * 14 12 11 43 43 H 1.08997 * 109.47279 * 175.00254 * 14 12 11 44 44 H 0.97004 * 120.00525 * 359.97438 * 15 14 12 45 45 H 0.96998 * 119.99984 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.46999 * 60.00050 * 26 24 12 47 47 H 1.09000 * 109.47347 * 179.97438 * 26 24 12 48 48 H 1.08992 * 109.47474 * 299.99634 * 26 24 12 49 49 H 1.09008 * 109.58859 * 113.84030 * 27 9 7 50 50 H 1.09002 * 109.58786 * 353.42232 * 27 9 7 51 51 H 1.08001 * 120.35462 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0273 -0.0009 6 6 5.7187 0.0442 -0.0008 7 6 6.2209 0.0499 -1.4216 8 8 5.4329 0.0413 -2.3435 9 7 7.5460 0.0656 -1.6679 10 6 8.5129 0.0768 -0.5617 11 6 9.4987 -1.0795 -0.7568 12 6 10.1319 -0.9758 -2.1461 13 1 10.6406 -0.0166 -2.2427 14 6 11.1425 -2.1095 -2.3317 15 7 12.2491 -1.9366 -1.3873 16 6 13.2801 -2.8376 -1.3684 17 1 13.2773 -3.6758 -2.0494 18 6 14.3290 -2.6735 -0.4741 19 7 14.3322 -1.6522 0.3562 20 14 15.7358 -3.9021 -0.4487 21 1 16.7964 -3.4597 -1.3893 22 1 16.2954 -3.9858 0.9242 23 1 15.2341 -5.2376 -0.8610 24 6 9.0419 -1.0849 -3.2148 25 1 9.4962 -1.0345 -4.2044 26 6 8.3045 -2.4162 -3.0581 27 6 8.0510 0.0708 -3.0476 28 6 3.6017 -1.1508 -0.0008 29 8 4.2311 -2.1966 -0.0008 30 6 2.1965 -1.1768 -0.0005 31 1 -0.3634 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6822 2.1486 0.0007 35 1 4.1103 2.1343 0.0093 36 1 6.0922 -0.8416 0.5130 37 1 6.0718 0.9382 0.5130 38 1 7.9868 -0.0473 0.3848 39 1 9.0548 1.0225 -0.5596 40 1 10.2781 -1.0252 0.0033 41 1 8.9691 -2.0280 -0.6677 42 1 10.6535 -3.0659 -2.1471 43 1 11.5281 -2.0893 -3.3509 44 1 12.2515 -1.1839 -0.7754 45 1 15.0649 -1.5377 0.9814 46 1 7.8493 -2.4651 -2.0688 47 1 7.5280 -2.4933 -3.8191 48 1 9.0104 -3.2385 -3.1743 49 1 8.5551 1.0162 -3.2487 50 1 7.2200 -0.0572 -3.7413 51 1 1.6682 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185234029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:08 Heat of formation + Delta-G solvation = -49.712740 kcal Electronic energy + Delta-G solvation = -31107.098552 eV Core-core repulsion = 27006.096066 eV Total energy + Delta-G solvation = -4101.002486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.58320 -41.30275 -39.29217 -38.10953 -36.61363 -36.24201 -34.93067 -33.30869 -31.97814 -31.44023 -30.50387 -28.65075 -28.51437 -26.99716 -25.44262 -24.65561 -24.21015 -23.14971 -22.52633 -21.18420 -19.70173 -19.08347 -18.58097 -18.52909 -18.35541 -17.04954 -16.89358 -16.83774 -16.53817 -16.13012 -15.85348 -15.54972 -15.40298 -15.18028 -15.04367 -14.99055 -14.75914 -14.40177 -14.15823 -13.98477 -13.77484 -13.66406 -13.50545 -13.33153 -13.03954 -12.99507 -12.87294 -12.82605 -12.72192 -12.48475 -12.45999 -12.19878 -12.07549 -11.92570 -11.59117 -11.48352 -11.26034 -11.13960 -11.09685 -10.90093 -10.53969 -9.70104 -8.98642 -8.96570 -7.95090 -5.22156 -0.11716 0.92125 1.37491 1.45787 1.46938 1.47640 1.56101 2.00984 2.55739 2.65789 3.31194 3.38238 3.61043 3.69064 3.71795 3.74845 3.80586 3.86367 4.02858 4.04966 4.13320 4.20104 4.29607 4.33426 4.38229 4.39908 4.45389 4.61648 4.66967 4.73203 4.76814 4.79852 4.82752 4.83826 4.90275 4.95544 5.05568 5.10459 5.14130 5.16450 5.17896 5.24016 5.30594 5.47235 5.49278 5.51910 5.58778 5.67056 6.05784 6.26082 6.28436 6.93484 7.00444 7.35247 8.11309 8.36509 9.28034 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002087 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.748707 B =13414.228060 C =13686.495348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.034 3.966 3 C -0.229 4.229 4 C 0.140 3.860 5 N -0.483 5.483 6 C 0.068 3.932 7 C 0.503 3.497 8 O -0.575 6.575 9 N -0.597 5.597 10 C 0.109 3.891 11 C -0.126 4.126 12 C -0.076 4.076 13 H 0.077 0.923 14 C 0.158 3.842 15 N -0.740 5.740 16 C -0.246 4.246 17 H 0.068 0.932 18 C -0.072 4.072 19 N -0.964 5.964 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.275 1.275 24 C -0.090 4.090 25 H 0.093 0.907 26 C -0.139 4.139 27 C 0.122 3.878 28 C 0.501 3.499 29 O -0.613 6.613 30 C -0.293 4.293 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.185 0.815 35 H 0.204 0.796 36 H 0.119 0.881 37 H 0.175 0.825 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.013 0.987 43 H 0.015 0.985 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.041 0.959 47 H 0.049 0.951 48 H 0.052 0.948 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.470 14.013 0.344 30.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 C -0.251 4.251 4 C 0.014 3.986 5 N -0.192 5.192 6 C -0.056 4.056 7 C 0.291 3.709 8 O -0.455 6.455 9 N -0.329 5.329 10 C -0.013 4.013 11 C -0.164 4.164 12 C -0.095 4.095 13 H 0.096 0.904 14 C 0.031 3.969 15 N -0.383 5.383 16 C -0.378 4.378 17 H 0.086 0.914 18 C -0.264 4.264 19 N -0.615 5.615 20 Si 0.798 3.202 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.200 1.200 24 C -0.110 4.110 25 H 0.111 0.889 26 C -0.197 4.197 27 C -0.001 4.001 28 C 0.306 3.694 29 O -0.501 6.501 30 C -0.315 4.315 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.202 0.798 35 H 0.221 0.779 36 H 0.137 0.863 37 H 0.192 0.808 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.110 0.890 50 H 0.097 0.903 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.368 13.198 -0.199 30.384 hybrid contribution 1.329 -1.182 0.151 1.786 sum -26.038 12.015 -0.048 28.677 Atomic orbital electron populations 1.21041 0.87963 1.04564 1.04348 1.20645 0.98528 0.92074 0.85767 1.21066 0.92383 0.99778 1.11917 1.22719 0.94441 0.89619 0.91833 1.45098 1.07751 1.07565 1.58754 1.22075 0.79267 1.09261 0.95027 1.21033 0.82380 0.75751 0.91766 1.90703 1.55772 1.51815 1.47192 1.48115 1.04884 1.71589 1.08319 1.22019 0.90411 0.99690 0.89171 1.21874 0.98446 0.98760 0.97319 1.21172 0.94546 0.98759 0.95043 0.90435 1.20834 0.87810 0.96263 0.91982 1.42515 1.22139 1.30735 1.42889 1.19579 0.99043 1.04341 1.14809 0.91361 1.25473 1.01467 1.00407 0.99086 1.69779 1.33983 1.32262 1.25458 0.85210 0.79633 0.78874 0.76461 1.21374 1.21995 1.20002 1.21409 0.94983 0.94904 0.99666 0.88917 1.21785 0.99602 0.97377 1.00893 1.21660 0.97137 0.98708 0.82554 1.17548 0.90355 0.82693 0.78777 1.90920 1.70275 1.32380 1.56551 1.21879 0.91481 1.00836 1.17281 0.88420 0.88578 0.91036 0.79820 0.77930 0.86288 0.80815 0.87552 0.88247 0.91230 0.92818 0.96936 0.96722 0.78980 0.93958 0.93983 0.93234 0.92886 0.89040 0.90284 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.03 71.24 0.71 -0.19 16 2 C 0.03 0.49 5.89 -19.82 -0.12 0.38 16 3 C -0.23 -2.32 9.71 22.08 0.21 -2.10 16 4 C 0.14 1.64 10.28 83.42 0.86 2.49 16 5 N -0.48 -9.92 2.07 -655.07 -1.36 -11.28 16 6 C 0.07 1.22 4.16 85.63 0.36 1.58 16 7 C 0.50 12.16 7.76 87.65 0.68 12.84 16 8 O -0.58 -18.53 15.84 -3.03 -0.05 -18.58 16 9 N -0.60 -12.92 2.41 -818.96 -1.97 -14.89 16 10 C 0.11 2.04 6.34 86.36 0.55 2.58 16 11 C -0.13 -3.49 4.90 30.67 0.15 -3.34 16 12 C -0.08 -2.26 1.96 -10.77 -0.02 -2.28 16 13 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 14 C 0.16 6.24 5.18 86.38 0.45 6.69 16 15 N -0.74 -36.82 5.32 -343.46 -1.83 -38.65 16 16 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 17 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 18 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 19 N -0.96 -57.76 13.06 21.65 0.28 -57.47 16 20 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 24 C -0.09 -2.30 2.72 -10.73 -0.03 -2.33 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 C -0.14 -4.05 8.38 71.98 0.60 -3.44 16 27 C 0.12 2.74 5.82 86.35 0.50 3.24 16 28 C 0.50 14.59 7.40 84.82 0.63 15.22 16 29 O -0.61 -23.82 16.64 -5.50 -0.09 -23.92 16 30 C -0.29 -6.81 9.65 22.40 0.22 -6.60 16 31 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.10 0.33 8.10 -2.39 -0.02 0.31 16 33 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 34 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 35 H 0.20 0.50 8.03 -2.91 -0.02 0.48 16 36 H 0.12 2.49 6.94 -2.38 -0.02 2.48 16 37 H 0.17 1.11 7.81 -2.39 -0.02 1.09 16 38 H 0.11 1.45 5.93 -2.39 -0.01 1.44 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 2.24 7.15 -2.39 -0.02 2.23 16 41 H 0.05 1.67 6.34 -2.39 -0.02 1.65 16 42 H 0.01 0.53 6.74 -2.39 -0.02 0.51 16 43 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.38 19.41 6.85 -92.71 -0.63 18.77 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.04 1.33 5.97 -2.38 -0.01 1.32 16 47 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.05 1.61 6.58 -2.39 -0.02 1.60 16 49 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 50 H 0.08 2.01 7.01 -2.39 -0.02 1.99 16 51 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -85.14 402.70 4.38 -80.77 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.30 Total: 27.55 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 7.06 Total: 8.16 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -4.88 Total: -122.30 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.14 Total: -42.49 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -85.14 4.38 -80.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185234029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.056 kcal (2) G-P(sol) polarization free energy of solvation -85.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds