Wall clock time and date at job start Wed Apr 1 2020 05:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35924 * 117.00016 * 2 1 4 4 C 1.38857 * 120.40452 * 359.97438 * 3 2 1 5 5 N 1.31876 * 120.99770 * 179.72153 * 4 3 2 6 6 C 1.31684 * 121.94425 * 0.27820 * 5 4 3 7 7 C 1.39521 * 120.69022 * 0.02562 * 6 5 4 8 8 C 1.47853 * 120.52992 * 179.97438 * 7 6 5 9 9 O 1.21564 * 120.00067 * 234.43941 * 8 7 6 10 10 N 1.34776 * 120.00206 * 54.44166 * 8 7 6 11 11 C 1.46923 * 120.63036 * 5.29915 * 10 8 7 12 12 C 1.53624 * 108.54349 * 126.36887 * 11 10 8 13 13 C 1.53041 * 109.24267 * 54.85454 * 12 11 10 14 14 C 1.52994 * 109.46049 * 178.48787 * 13 12 11 15 15 H 1.08996 * 109.47460 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.47064 * 60.07248 * 14 13 12 17 17 N 1.46501 * 109.47232 * 300.07153 * 14 13 12 18 18 C 1.36938 * 119.99932 * 204.99436 * 17 14 13 19 19 H 1.08002 * 120.00084 * 0.02562 * 18 17 14 20 20 C 1.38813 * 120.00326 * 179.97438 * 18 17 14 21 21 N 1.31621 * 119.99464 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00341 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47203 * 90.00477 * 22 20 18 24 24 H 1.48498 * 109.46920 * 210.00130 * 22 20 18 25 25 H 1.48496 * 109.47052 * 330.00285 * 22 20 18 26 26 C 1.53038 * 109.53868 * 298.51428 * 13 12 11 27 27 C 1.46931 * 120.63145 * 185.57794 * 10 8 7 28 28 C 1.38845 * 120.40800 * 180.29419 * 3 2 1 29 29 C 1.50698 * 120.87915 * 359.97438 * 28 3 2 30 30 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47291 * 299.99967 * 1 2 3 32 32 H 1.08996 * 109.47424 * 59.99901 * 1 2 3 33 33 H 1.07994 * 119.49768 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.65640 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.58684 * 246.20500 * 11 10 8 36 36 H 1.09001 * 109.58407 * 6.62566 * 11 10 8 37 37 H 1.09002 * 109.63314 * 294.86508 * 12 11 10 38 38 H 1.08997 * 109.45574 * 174.74134 * 12 11 10 39 39 H 1.09004 * 109.45339 * 58.53535 * 13 12 11 40 40 H 1.09005 * 109.46653 * 299.99735 * 16 14 13 41 41 H 1.08995 * 109.46908 * 59.99878 * 16 14 13 42 42 H 1.08996 * 109.46985 * 179.97438 * 16 14 13 43 43 H 0.97000 * 120.00275 * 25.00228 * 17 14 13 44 44 H 0.97001 * 119.99930 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.49681 * 301.41047 * 26 13 12 46 46 H 1.08998 * 109.49279 * 181.31573 * 26 13 12 47 47 H 1.09004 * 109.58730 * 353.37489 * 27 10 8 48 48 H 1.08999 * 109.58494 * 113.79484 * 27 10 8 49 49 H 1.09005 * 109.47170 * 275.18853 * 29 28 3 50 50 H 1.08993 * 109.47363 * 35.18623 * 29 28 3 51 51 H 1.09001 * 109.47611 * 155.19205 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5621 0.0050 6 6 3.1952 3.6892 0.0057 7 6 4.0198 2.5637 0.0002 8 6 5.4910 2.7105 0.0005 9 8 6.1564 2.1657 -0.8587 10 7 6.0944 3.4483 0.9534 11 6 5.3181 4.0168 2.0636 12 6 5.9705 3.5871 3.3864 13 6 7.4454 3.9954 3.3774 14 6 8.0909 3.6034 4.7079 15 1 9.1413 3.8945 4.7019 16 6 7.9835 2.0893 4.9004 17 7 7.4005 4.2854 5.8054 18 6 8.0552 4.5209 6.9848 19 1 9.0807 4.2043 7.1058 20 6 7.4013 5.1676 8.0246 21 7 6.1518 5.5540 7.8769 22 14 8.2946 5.4895 9.6332 23 1 8.9711 6.8099 9.5681 24 1 7.3169 5.4889 10.7510 25 1 9.3057 4.4258 9.8594 26 6 8.1667 3.2829 2.2311 27 6 7.5402 3.7045 0.8983 28 6 3.4320 1.2936 -0.0061 29 6 4.2809 0.0485 -0.0124 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2197 2.3226 -0.0014 34 1 3.6365 4.6749 0.0099 35 1 5.3172 5.1042 1.9897 36 1 4.2943 3.6449 2.0217 37 1 5.8931 2.5056 3.4986 38 1 5.4626 4.0763 4.2175 39 1 7.5226 5.0740 3.2404 40 1 6.9333 1.7975 4.9062 41 1 8.4972 1.5819 4.0839 42 1 8.4438 1.8100 5.8481 43 1 6.4796 4.5700 5.6966 44 1 5.6946 6.0055 8.6035 45 1 8.0687 2.2043 2.3541 46 1 9.2219 3.5561 2.2396 47 1 7.9831 3.1264 0.0872 48 1 7.7169 4.7670 0.7313 49 1 4.4135 -0.3060 1.0099 50 1 3.7891 -0.7237 -0.6037 51 1 5.2544 0.2746 -0.4475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267487861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:24 Heat of formation + Delta-G solvation = -47.018131 kcal Electronic energy + Delta-G solvation = -31470.869278 eV Core-core repulsion = 27369.983638 eV Total energy + Delta-G solvation = -4100.885639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.25540 -41.01759 -39.45277 -38.87282 -36.90149 -34.92312 -34.70122 -32.89163 -31.96796 -31.45269 -29.86714 -28.95262 -28.49475 -26.82526 -25.86904 -24.63534 -24.38445 -23.43180 -22.67683 -21.00479 -19.94612 -19.28841 -18.92995 -18.58473 -17.61239 -17.38378 -17.02760 -16.88648 -16.67879 -16.19095 -15.91200 -15.44510 -15.35033 -15.22578 -15.02308 -14.86496 -14.45192 -14.33832 -14.20468 -13.99386 -13.87288 -13.74726 -13.58970 -13.11563 -13.02965 -12.93606 -12.86763 -12.76445 -12.74830 -12.65088 -12.37137 -12.15132 -11.99876 -11.76277 -11.59719 -11.43213 -11.23296 -11.07489 -10.87029 -10.58682 -10.43187 -9.73261 -9.52053 -8.94824 -7.90696 -5.16907 -0.38975 0.07338 1.40939 1.48438 1.48892 1.57040 1.81497 2.23139 2.55653 2.58603 3.21194 3.40069 3.42847 3.46945 3.58725 3.77148 3.80164 3.89263 3.93503 4.11951 4.15860 4.26086 4.31710 4.35924 4.38844 4.39916 4.48108 4.54469 4.60225 4.60919 4.66679 4.73407 4.76994 4.79310 4.87611 4.94632 4.97989 5.01920 5.07443 5.09409 5.14204 5.26449 5.31771 5.34036 5.42789 5.53326 5.59227 5.72239 6.12556 6.23529 6.33053 6.72104 6.94500 7.39431 8.18259 8.40941 9.32774 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.002604 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.786495 B =10751.066726 C =11688.295071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.073 3.927 4 C 0.038 3.962 5 N -0.466 5.466 6 C 0.097 3.903 7 C -0.153 4.153 8 C 0.572 3.428 9 O -0.562 6.562 10 N -0.593 5.593 11 C 0.111 3.889 12 C -0.120 4.120 13 C -0.080 4.080 14 C 0.172 3.828 15 H 0.041 0.959 16 C -0.157 4.157 17 N -0.735 5.735 18 C -0.233 4.233 19 H 0.071 0.929 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.966 3.034 23 H -0.288 1.288 24 H -0.298 1.298 25 H -0.273 1.273 26 C -0.118 4.118 27 C 0.113 3.887 28 C -0.044 4.044 29 C -0.117 4.117 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.192 0.808 34 H 0.177 0.823 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.028 0.972 43 H 0.375 0.625 44 H 0.249 0.751 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.086 0.914 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 -9.108 -20.063 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.025 3.975 4 C -0.119 4.119 5 N -0.175 5.175 6 C -0.061 4.061 7 C -0.159 4.159 8 C 0.360 3.640 9 O -0.442 6.442 10 N -0.324 5.324 11 C -0.011 4.011 12 C -0.159 4.159 13 C -0.099 4.099 14 C 0.064 3.936 15 H 0.059 0.941 16 C -0.216 4.216 17 N -0.376 5.376 18 C -0.366 4.366 19 H 0.089 0.911 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.796 3.204 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.198 1.198 26 C -0.157 4.157 27 C -0.008 4.008 28 C -0.053 4.053 29 C -0.173 4.173 30 H 0.142 0.858 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.208 0.792 34 H 0.194 0.806 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.209 0.791 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.098 0.902 50 H 0.104 0.896 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.364 -8.858 -20.369 24.105 hybrid contribution 0.269 -0.221 1.366 1.409 sum -9.095 -9.078 -19.003 22.940 Atomic orbital electron populations 1.23504 0.75611 1.06325 1.02826 1.86090 1.23938 1.24848 1.88169 1.19748 0.91870 0.86927 0.98996 1.23529 1.02094 0.86370 0.99937 1.67609 1.11758 1.26736 1.11423 1.23007 0.88504 0.98373 0.96230 1.20635 0.94305 0.94562 1.06361 1.18120 0.86822 0.77872 0.81215 1.90741 1.66067 1.48247 1.39169 1.48114 1.09613 1.50495 1.24162 1.22017 0.95038 0.99485 0.84561 1.21922 0.96126 1.01311 0.96500 1.21252 0.94597 1.00020 0.94018 1.20420 0.95034 0.91112 0.87059 0.94070 1.22384 1.00645 0.98425 1.00157 1.42687 1.13854 1.69218 1.11875 1.19593 0.96070 1.29103 0.91797 0.91095 1.25441 0.97126 1.02631 1.01588 1.69792 1.11767 1.47140 1.33233 0.85248 0.77318 0.77928 0.79948 1.21556 1.22470 1.19833 1.21927 1.00354 1.00695 0.92701 1.21761 0.78363 1.02213 0.98473 1.19865 0.91916 0.95512 0.98029 1.20806 0.99397 0.93769 1.03363 0.85838 0.91208 0.90924 0.79175 0.80639 0.89198 0.89564 0.92003 0.91938 0.91346 0.93897 0.91382 0.95269 0.79139 0.94205 0.91521 0.89120 0.89141 0.89472 0.90210 0.89561 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.32 -5.35 9.76 -92.69 -0.90 -6.25 16 3 C 0.07 1.44 6.68 22.56 0.15 1.60 16 4 C 0.04 0.69 10.21 84.83 0.87 1.56 16 5 N -0.47 -10.11 10.34 -194.40 -2.01 -12.12 16 6 C 0.10 2.09 8.96 85.02 0.76 2.85 16 7 C -0.15 -3.65 4.60 -20.01 -0.09 -3.74 16 8 C 0.57 14.85 6.59 86.79 0.57 15.42 16 9 O -0.56 -17.54 14.63 -3.92 -0.06 -17.60 16 10 N -0.59 -13.70 2.97 -821.47 -2.44 -16.14 16 11 C 0.11 2.52 5.64 86.51 0.49 3.01 16 12 C -0.12 -3.40 4.83 30.82 0.15 -3.26 16 13 C -0.08 -2.29 2.14 -10.77 -0.02 -2.32 16 14 C 0.17 6.34 2.72 44.99 0.12 6.47 16 15 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 16 C -0.16 -5.38 8.79 71.98 0.63 -4.75 16 17 N -0.73 -35.39 5.04 -322.94 -1.63 -37.02 16 18 C -0.23 -12.69 9.93 84.03 0.83 -11.86 16 19 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 20 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 21 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 22 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 26 C -0.12 -2.71 4.96 30.67 0.15 -2.56 16 27 C 0.11 2.42 6.44 86.36 0.56 2.98 16 28 C -0.04 -1.03 5.96 -19.30 -0.12 -1.14 16 29 C -0.12 -2.58 9.49 71.24 0.68 -1.90 16 30 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.42 7.68 -2.38 -0.02 0.40 16 32 H 0.07 0.37 7.67 -2.39 -0.02 0.35 16 33 H 0.19 2.12 6.30 -2.91 -0.02 2.10 16 34 H 0.18 3.14 7.78 -2.91 -0.02 3.12 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.91 5.38 -2.39 -0.01 1.89 16 37 H 0.06 1.82 6.51 -2.39 -0.02 1.80 16 38 H 0.06 2.11 6.46 -2.39 -0.02 2.09 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.50 6.46 -2.38 -0.02 1.49 16 41 H 0.07 1.92 6.46 -2.39 -0.02 1.90 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.38 19.16 6.04 -92.71 -0.56 18.60 16 44 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.07 1.60 6.51 -2.39 -0.02 1.59 16 46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.09 2.02 7.00 -2.39 -0.02 2.01 16 48 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 50 H 0.09 1.69 7.78 -2.39 -0.02 1.67 16 51 H 0.07 1.90 5.72 -2.39 -0.01 1.88 16 Total: -1.00 -69.96 394.90 2.98 -66.98 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: 0.40 Total: 32.38 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 7.31 Total: -0.27 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -5.79 Total: -123.15 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.96 Total: -23.85 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -69.96 2.98 -66.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267487861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.966 kcal (2) G-P(sol) polarization free energy of solvation -69.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds