Wall clock time and date at job start Wed Apr 1 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35923 * 117.00310 * 2 1 4 4 C 1.38859 * 120.40226 * 0.02562 * 3 2 1 5 5 N 1.31880 * 120.99773 * 179.97438 * 4 3 2 6 6 C 1.31693 * 121.93968 * 359.69818 * 5 4 3 7 7 C 1.39522 * 120.68941 * 0.58983 * 6 5 4 8 8 C 1.47858 * 120.52970 * 179.70080 * 7 6 5 9 9 O 1.21549 * 119.99878 * 126.02711 * 8 7 6 10 10 N 1.34775 * 119.99761 * 306.03119 * 8 7 6 11 11 C 1.46925 * 120.63146 * 354.24855 * 10 8 7 12 12 C 1.53196 * 108.77140 * 233.63318 * 11 10 8 13 13 C 1.53044 * 109.31184 * 305.36347 * 12 11 10 14 14 C 1.53037 * 109.53742 * 61.37062 * 13 12 11 15 15 H 1.09000 * 109.49804 * 58.61634 * 14 13 12 16 16 C 1.52996 * 109.49644 * 178.68171 * 14 13 12 17 17 H 1.09001 * 109.47234 * 59.99605 * 16 14 13 18 18 C 1.53001 * 109.47312 * 299.99828 * 16 14 13 19 19 N 1.46498 * 109.47145 * 179.97438 * 16 14 13 20 20 C 1.36940 * 120.00402 * 204.99754 * 19 16 14 21 21 H 1.07996 * 119.99419 * 0.02562 * 20 19 16 22 22 C 1.38814 * 120.00052 * 180.02562 * 20 19 16 23 23 N 1.31621 * 119.99537 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00085 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46930 * 90.00059 * 24 22 20 26 26 H 1.48497 * 109.46936 * 209.99998 * 24 22 20 27 27 H 1.48498 * 109.47044 * 329.99912 * 24 22 20 28 28 C 1.46930 * 120.62721 * 174.27241 * 10 8 7 29 29 C 1.38834 * 120.40538 * 180.02562 * 3 2 1 30 30 C 1.50702 * 120.88457 * 0.02562 * 29 3 2 31 31 H 1.08995 * 109.47572 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47009 * 299.99958 * 1 2 3 33 33 H 1.09003 * 109.47065 * 59.99654 * 1 2 3 34 34 H 1.07995 * 119.50032 * 359.95421 * 4 3 2 35 35 H 1.07997 * 119.64932 * 180.31509 * 6 5 4 36 36 H 1.08994 * 109.58605 * 113.85218 * 11 10 8 37 37 H 1.08995 * 109.70535 * 353.48798 * 11 10 8 38 38 H 1.09005 * 109.49520 * 185.41407 * 12 11 10 39 39 H 1.08999 * 109.50095 * 65.31527 * 12 11 10 40 40 H 1.08998 * 109.46203 * 301.34294 * 13 12 11 41 41 H 1.09005 * 109.44592 * 181.38355 * 13 12 11 42 42 H 1.08994 * 109.47010 * 59.99740 * 18 16 14 43 43 H 1.09003 * 109.47416 * 180.02562 * 18 16 14 44 44 H 1.09001 * 109.46789 * 300.00050 * 18 16 14 45 45 H 0.97001 * 120.00109 * 25.00388 * 19 16 14 46 46 H 0.96998 * 119.99616 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.58390 * 6.57958 * 28 10 8 48 48 H 1.09000 * 109.58235 * 246.15410 * 28 10 8 49 49 H 1.09000 * 109.46606 * 274.93880 * 30 29 3 50 50 H 1.09002 * 109.46588 * 34.93326 * 30 29 3 51 51 H 1.08997 * 109.47600 * 154.93606 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1954 3.6891 0.0070 7 6 4.0199 2.5636 0.0006 8 6 5.4912 2.7102 0.0006 9 8 6.1578 2.1500 0.8487 10 7 6.0931 3.4653 -0.9396 11 6 5.3166 4.0458 -2.0436 12 6 5.9688 3.6433 -3.3701 13 6 7.4430 4.0541 -3.3544 14 6 8.1656 3.3242 -2.2199 15 1 8.0699 2.2475 -2.3608 16 6 9.6461 3.7103 -2.2257 17 1 9.7413 4.7868 -2.0836 18 6 10.2710 3.3154 -3.5652 19 7 10.3371 3.0118 -1.1391 20 6 11.4855 3.5366 -0.6088 21 1 11.8813 4.4657 -0.9914 22 6 12.1405 2.8744 0.4204 23 7 13.2440 3.3792 0.9304 24 14 11.4561 1.2670 1.0816 25 1 12.0332 0.1318 0.3177 26 1 11.8127 1.1302 2.5166 27 1 9.9782 1.2612 0.9361 28 6 7.5384 3.7230 -0.8804 29 6 3.4320 1.2934 -0.0005 30 6 4.2810 0.0483 -0.0017 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 0.2197 2.3226 0.0002 35 1 3.6367 4.6748 0.0123 36 1 5.3104 5.1320 -1.9543 37 1 4.2938 3.6705 -2.0106 38 1 5.4599 4.1455 -4.1928 39 1 5.8933 2.5637 -3.4998 40 1 7.5185 5.1304 -3.2000 41 1 7.9032 3.7908 -4.3068 42 1 9.7567 3.8354 -4.3734 43 1 11.3258 3.5901 -3.5692 44 1 10.1757 2.2389 -3.7073 45 1 9.9814 2.1774 -0.7953 46 1 13.7015 2.9167 1.6498 47 1 7.9823 3.1326 -0.0788 48 1 7.7132 4.7830 -0.6962 49 1 4.4129 -0.3023 1.0219 50 1 3.7892 -0.7261 -0.5905 51 1 5.2546 0.2727 -0.4373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268172671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:10 Heat of formation + Delta-G solvation = -24.259885 kcal Electronic energy + Delta-G solvation = -31723.969718 eV Core-core repulsion = 27624.070951 eV Total energy + Delta-G solvation = -4099.898768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.41583 -40.06628 -38.48808 -37.77422 -35.63880 -34.09752 -33.09690 -31.84718 -31.26516 -30.08135 -28.65475 -28.18064 -27.93669 -25.73509 -24.43291 -23.31451 -23.00089 -22.50718 -21.10076 -19.85480 -19.47286 -18.24002 -17.83856 -17.45731 -16.77772 -16.57783 -16.31793 -15.98704 -15.22499 -14.90520 -14.65727 -14.46265 -14.18640 -14.06274 -14.03731 -13.49384 -13.34850 -13.12469 -13.07696 -12.97725 -12.94582 -12.74662 -12.41941 -12.40092 -12.21847 -12.03810 -11.90726 -11.58125 -11.21188 -11.12771 -10.97128 -10.79373 -10.67486 -10.42890 -10.29645 -10.09491 -9.86629 -9.76794 -9.53210 -9.48901 -8.89930 -8.82650 -8.59747 -7.21900 -5.71717 -3.07053 0.42195 0.84816 2.43251 2.70814 2.98411 3.35473 3.45784 3.53089 3.55010 3.99234 4.12662 4.26547 4.39259 4.51328 4.64791 4.65285 4.66659 4.76073 4.82216 4.89947 4.93404 5.04523 5.11558 5.21260 5.24041 5.35775 5.41683 5.48518 5.53204 5.57507 5.62177 5.70216 5.80542 5.82698 5.87034 5.90749 6.03021 6.04706 6.07729 6.14118 6.30160 6.34973 6.40437 6.52829 6.59537 6.72386 6.83406 7.02256 7.32992 7.47848 8.03994 8.07241 8.47432 9.26070 9.99205 10.18388 11.46539 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003030 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.103855 B = 9238.620531 C =10356.057251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.071 3.929 4 C 0.032 3.968 5 N -0.453 5.453 6 C 0.098 3.902 7 C -0.137 4.137 8 C 0.562 3.438 9 O -0.517 6.517 10 N -0.602 5.602 11 C 0.103 3.897 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.106 4.106 15 H 0.069 0.931 16 C 0.185 3.815 17 H 0.056 0.944 18 C -0.165 4.165 19 N -0.749 5.749 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.935 5.935 24 Si 0.878 3.122 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.271 1.271 28 C 0.120 3.880 29 C -0.026 4.026 30 C -0.110 4.110 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.103 0.897 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.802 -2.289 -8.442 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.024 3.976 4 C -0.125 4.125 5 N -0.162 5.162 6 C -0.060 4.060 7 C -0.142 4.142 8 C 0.348 3.652 9 O -0.392 6.392 10 N -0.335 5.335 11 C -0.020 4.020 12 C -0.171 4.171 13 C -0.152 4.152 14 C -0.127 4.127 15 H 0.088 0.912 16 C 0.076 3.924 17 H 0.074 0.926 18 C -0.225 4.225 19 N -0.392 5.392 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.583 5.583 24 Si 0.708 3.292 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.197 1.197 28 C -0.001 4.001 29 C -0.035 4.035 30 C -0.166 4.166 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.121 0.879 48 H 0.091 0.909 49 H 0.103 0.897 50 H 0.094 0.906 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.674 -1.907 -7.907 29.805 hybrid contribution -0.170 -1.757 0.533 1.844 sum -28.844 -3.664 -7.374 29.996 Atomic orbital electron populations 1.23155 0.77861 1.04568 1.01604 1.86107 1.21618 1.25521 1.88496 1.19717 0.92159 0.86100 0.99635 1.23031 1.00651 0.87054 1.01755 1.67553 1.11710 1.25927 1.11003 1.22830 0.88402 0.98133 0.96681 1.20795 0.95107 0.93872 1.04454 1.17996 0.86280 0.79019 0.81955 1.90871 1.64983 1.45764 1.37627 1.48133 1.09794 1.50339 1.25221 1.21861 0.95136 0.98634 0.86373 1.21916 0.96938 1.01883 0.96377 1.21626 0.93943 1.00493 0.99176 1.21810 0.96389 1.00505 0.93953 0.91237 1.20144 0.87625 0.96427 0.88251 0.92576 1.22449 1.01638 1.00498 0.97915 1.42831 1.29180 1.26495 1.40676 1.19029 0.98640 1.06108 1.13284 0.89241 1.24638 0.97128 0.98429 0.98742 1.69700 1.18996 1.40253 1.29320 0.86636 0.79116 0.84991 0.78464 1.21277 1.21808 1.19717 1.21786 0.76899 1.01969 0.99421 1.19716 0.90921 0.95532 0.97326 1.20723 0.98728 0.93416 1.03776 0.87723 0.92304 0.92310 0.82130 0.81870 0.90866 0.90236 0.90756 0.91664 0.91511 0.90968 0.93933 0.92362 0.93731 0.80586 0.93138 0.87893 0.90888 0.89716 0.90574 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.70 9.76 -19.50 -0.19 -2.89 16 3 C 0.07 0.73 6.68 -39.13 -0.26 0.47 16 4 C 0.03 0.30 10.21 -17.30 -0.18 0.12 16 5 N -0.45 -4.88 10.34 -12.79 -0.13 -5.01 16 6 C 0.10 1.07 8.96 -17.13 -0.15 0.92 16 7 C -0.14 -1.72 4.61 -104.84 -0.48 -2.20 16 8 C 0.56 8.50 6.18 -12.32 -0.08 8.42 16 9 O -0.52 -10.04 15.46 5.32 0.08 -9.96 16 10 N -0.60 -8.07 2.97 -173.88 -0.52 -8.58 16 11 C 0.10 1.00 5.59 -3.71 -0.02 0.98 16 12 C -0.13 -1.23 6.08 -26.61 -0.16 -1.39 16 13 C -0.11 -1.27 4.85 -26.69 -0.13 -1.40 16 14 C -0.11 -1.58 1.97 -90.50 -0.18 -1.76 16 15 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 16 C 0.19 3.37 2.47 -67.93 -0.17 3.20 16 17 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 18 C -0.17 -2.75 9.14 37.16 0.34 -2.41 16 19 N -0.75 -17.42 4.33 -53.43 -0.23 -17.65 16 20 C -0.24 -6.73 10.41 -15.06 -0.16 -6.88 16 21 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -29.71 13.97 55.49 0.78 -28.94 16 24 Si 0.88 22.98 27.74 -169.99 -4.71 18.27 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 27 H -0.27 -6.91 6.52 56.52 0.37 -6.54 16 28 C 0.12 1.91 5.48 -3.71 -0.02 1.89 16 29 C -0.03 -0.31 5.96 -103.76 -0.62 -0.93 16 30 C -0.11 -1.31 9.10 36.01 0.33 -0.99 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 33 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 34 H 0.16 0.98 6.30 -52.49 -0.33 0.65 16 35 H 0.16 1.51 7.76 -52.49 -0.41 1.10 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.71 5.40 -51.93 -0.28 0.43 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 42 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.36 8.57 5.48 -40.82 -0.22 8.34 16 46 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 47 H 0.10 2.05 6.51 -51.93 -0.34 1.71 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.08 0.78 7.77 -51.93 -0.40 0.37 16 51 H 0.07 1.01 6.70 -51.93 -0.35 0.66 16 LS Contribution 398.22 15.07 6.00 6.00 Total: -1.00 -34.87 398.22 -8.00 -42.86 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.03 Total: 6.67 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.04 Total: -0.78 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.11 Total: -60.18 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.11 Total: -12.85 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.27 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.87 -8.00 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268172671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.605 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds