Wall clock time and date at job start Wed Apr 1 2020 05:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35923 * 117.00310 * 2 1 4 4 C 1.38859 * 120.40226 * 0.02562 * 3 2 1 5 5 N 1.31880 * 120.99773 * 179.97438 * 4 3 2 6 6 C 1.31693 * 121.93968 * 359.69818 * 5 4 3 7 7 C 1.39522 * 120.68941 * 0.58983 * 6 5 4 8 8 C 1.47858 * 120.52970 * 179.70080 * 7 6 5 9 9 O 1.21549 * 119.99878 * 126.02711 * 8 7 6 10 10 N 1.34775 * 119.99761 * 306.03119 * 8 7 6 11 11 C 1.46925 * 120.63146 * 354.24855 * 10 8 7 12 12 C 1.53196 * 108.77140 * 233.63318 * 11 10 8 13 13 C 1.53044 * 109.31184 * 305.36347 * 12 11 10 14 14 C 1.53037 * 109.53742 * 61.37062 * 13 12 11 15 15 H 1.09000 * 109.49804 * 58.61634 * 14 13 12 16 16 C 1.52996 * 109.49644 * 178.68171 * 14 13 12 17 17 H 1.09001 * 109.47234 * 59.99605 * 16 14 13 18 18 C 1.53001 * 109.47312 * 299.99828 * 16 14 13 19 19 N 1.46498 * 109.47145 * 179.97438 * 16 14 13 20 20 C 1.36940 * 120.00402 * 204.99754 * 19 16 14 21 21 H 1.07996 * 119.99419 * 0.02562 * 20 19 16 22 22 C 1.38814 * 120.00052 * 180.02562 * 20 19 16 23 23 N 1.31621 * 119.99537 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00085 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46930 * 90.00059 * 24 22 20 26 26 H 1.48497 * 109.46936 * 209.99998 * 24 22 20 27 27 H 1.48498 * 109.47044 * 329.99912 * 24 22 20 28 28 C 1.46930 * 120.62721 * 174.27241 * 10 8 7 29 29 C 1.38834 * 120.40538 * 180.02562 * 3 2 1 30 30 C 1.50702 * 120.88457 * 0.02562 * 29 3 2 31 31 H 1.08995 * 109.47572 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47009 * 299.99958 * 1 2 3 33 33 H 1.09003 * 109.47065 * 59.99654 * 1 2 3 34 34 H 1.07995 * 119.50032 * 359.95421 * 4 3 2 35 35 H 1.07997 * 119.64932 * 180.31509 * 6 5 4 36 36 H 1.08994 * 109.58605 * 113.85218 * 11 10 8 37 37 H 1.08995 * 109.70535 * 353.48798 * 11 10 8 38 38 H 1.09005 * 109.49520 * 185.41407 * 12 11 10 39 39 H 1.08999 * 109.50095 * 65.31527 * 12 11 10 40 40 H 1.08998 * 109.46203 * 301.34294 * 13 12 11 41 41 H 1.09005 * 109.44592 * 181.38355 * 13 12 11 42 42 H 1.08994 * 109.47010 * 59.99740 * 18 16 14 43 43 H 1.09003 * 109.47416 * 180.02562 * 18 16 14 44 44 H 1.09001 * 109.46789 * 300.00050 * 18 16 14 45 45 H 0.97001 * 120.00109 * 25.00388 * 19 16 14 46 46 H 0.96998 * 119.99616 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.58390 * 6.57958 * 28 10 8 48 48 H 1.09000 * 109.58235 * 246.15410 * 28 10 8 49 49 H 1.09000 * 109.46606 * 274.93880 * 30 29 3 50 50 H 1.09002 * 109.46588 * 34.93326 * 30 29 3 51 51 H 1.08997 * 109.47600 * 154.93606 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1954 3.6891 0.0070 7 6 4.0199 2.5636 0.0006 8 6 5.4912 2.7102 0.0006 9 8 6.1578 2.1500 0.8487 10 7 6.0931 3.4653 -0.9396 11 6 5.3166 4.0458 -2.0436 12 6 5.9688 3.6433 -3.3701 13 6 7.4430 4.0541 -3.3544 14 6 8.1656 3.3242 -2.2199 15 1 8.0699 2.2475 -2.3608 16 6 9.6461 3.7103 -2.2257 17 1 9.7413 4.7868 -2.0836 18 6 10.2710 3.3154 -3.5652 19 7 10.3371 3.0118 -1.1391 20 6 11.4855 3.5366 -0.6088 21 1 11.8813 4.4657 -0.9914 22 6 12.1405 2.8744 0.4204 23 7 13.2440 3.3792 0.9304 24 14 11.4561 1.2670 1.0816 25 1 12.0332 0.1318 0.3177 26 1 11.8127 1.1302 2.5166 27 1 9.9782 1.2612 0.9361 28 6 7.5384 3.7230 -0.8804 29 6 3.4320 1.2934 -0.0005 30 6 4.2810 0.0483 -0.0017 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 0.2197 2.3226 0.0002 35 1 3.6367 4.6748 0.0123 36 1 5.3104 5.1320 -1.9543 37 1 4.2938 3.6705 -2.0106 38 1 5.4599 4.1455 -4.1928 39 1 5.8933 2.5637 -3.4998 40 1 7.5185 5.1304 -3.2000 41 1 7.9032 3.7908 -4.3068 42 1 9.7567 3.8354 -4.3734 43 1 11.3258 3.5901 -3.5692 44 1 10.1757 2.2389 -3.7073 45 1 9.9814 2.1774 -0.7953 46 1 13.7015 2.9167 1.6498 47 1 7.9823 3.1326 -0.0788 48 1 7.7132 4.7830 -0.6962 49 1 4.4129 -0.3023 1.0219 50 1 3.7892 -0.7261 -0.5905 51 1 5.2546 0.2727 -0.4373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268172671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:09 Heat of formation + Delta-G solvation = -48.212040 kcal Electronic energy + Delta-G solvation = -31725.008362 eV Core-core repulsion = 27624.070951 eV Total energy + Delta-G solvation = -4100.937411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.28240 -41.04366 -39.39116 -38.83909 -37.11893 -34.97579 -34.70825 -33.34864 -32.23552 -31.55096 -30.02543 -28.99691 -28.50188 -26.78547 -25.87806 -24.56582 -24.15768 -23.38267 -22.28776 -21.34213 -20.44194 -19.61267 -19.00405 -18.60461 -17.67351 -17.40801 -17.06191 -16.90560 -16.75652 -16.31734 -15.91346 -15.54427 -15.24293 -15.10859 -14.95229 -14.83663 -14.44640 -14.30901 -14.29743 -14.16242 -13.98752 -13.92391 -13.76346 -13.53514 -13.23021 -13.00752 -12.87683 -12.77911 -12.59773 -12.42687 -12.34427 -12.20014 -11.95019 -11.85164 -11.72341 -11.53922 -11.34345 -11.21456 -11.00095 -10.66075 -10.46368 -9.73051 -9.53940 -9.29284 -8.03226 -5.33220 -0.41950 0.03672 1.32221 1.37318 1.40588 1.42703 1.76826 2.21631 2.45432 2.52773 3.20203 3.29692 3.37045 3.44126 3.51752 3.55595 3.77575 3.86583 3.91918 4.07046 4.08680 4.12887 4.24411 4.35055 4.40021 4.40549 4.41155 4.53796 4.57166 4.58453 4.62617 4.72422 4.77592 4.81556 4.88783 4.90034 4.95122 4.99921 5.01552 5.03293 5.14299 5.25796 5.27336 5.34394 5.44744 5.51031 5.62237 5.79651 6.12008 6.22495 6.25860 6.68636 6.95106 7.08618 7.87249 8.03137 9.18669 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003030 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.103855 B = 9238.620531 C =10356.057251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.077 3.923 4 C 0.043 3.957 5 N -0.460 5.460 6 C 0.101 3.899 7 C -0.148 4.148 8 C 0.559 3.441 9 O -0.574 6.574 10 N -0.596 5.596 11 C 0.097 3.903 12 C -0.126 4.126 13 C -0.109 4.109 14 C -0.093 4.093 15 H 0.058 0.942 16 C 0.177 3.823 17 H 0.052 0.948 18 C -0.156 4.156 19 N -0.754 5.754 20 C -0.213 4.213 21 H 0.065 0.935 22 C -0.059 4.059 23 N -0.982 5.982 24 Si 0.940 3.060 25 H -0.278 1.278 26 H -0.299 1.299 27 H -0.267 1.267 28 C 0.124 3.876 29 C -0.046 4.046 30 C -0.103 4.103 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.031 0.969 44 H 0.044 0.956 45 H 0.359 0.641 46 H 0.256 0.744 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.108 -2.079 -10.814 34.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.029 3.971 4 C -0.115 4.115 5 N -0.169 5.169 6 C -0.057 4.057 7 C -0.153 4.153 8 C 0.347 3.653 9 O -0.454 6.454 10 N -0.327 5.327 11 C -0.024 4.024 12 C -0.164 4.164 13 C -0.147 4.147 14 C -0.113 4.113 15 H 0.077 0.923 16 C 0.069 3.931 17 H 0.070 0.930 18 C -0.215 4.215 19 N -0.397 5.397 20 C -0.345 4.345 21 H 0.083 0.917 22 C -0.251 4.251 23 N -0.634 5.634 24 Si 0.769 3.231 25 H -0.205 1.205 26 H -0.226 1.226 27 H -0.192 1.192 28 C 0.002 3.998 29 C -0.055 4.055 30 C -0.160 4.160 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.213 0.787 35 H 0.195 0.805 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.191 0.809 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.110 0.890 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -33.048 -1.677 -10.365 34.676 hybrid contribution 1.018 -1.781 1.198 2.375 sum -32.030 -3.457 -9.167 33.495 Atomic orbital electron populations 1.23523 0.75429 1.06336 1.03004 1.86104 1.24099 1.24864 1.88116 1.19691 0.91432 0.87120 0.98871 1.23574 1.02148 0.86120 0.99627 1.67653 1.11308 1.26591 1.11303 1.22977 0.88450 0.98069 0.96203 1.20570 0.93316 0.94882 1.06568 1.18459 0.87392 0.78209 0.81274 1.90832 1.66448 1.48178 1.39918 1.48178 1.08916 1.49744 1.25844 1.22195 0.95203 0.99826 0.85147 1.21906 0.95642 1.01841 0.97021 1.21621 0.94819 1.00634 0.97577 1.21659 0.94214 1.00352 0.95124 0.92350 1.20455 0.89580 0.95670 0.87394 0.93029 1.22309 1.00250 1.00965 0.97989 1.42936 1.28153 1.26670 1.41915 1.19036 0.99082 1.04509 1.11824 0.91702 1.25283 0.97932 1.01832 1.00021 1.69844 1.20885 1.42050 1.30613 0.85630 0.78561 0.81630 0.77271 1.20474 1.22603 1.19249 1.21523 0.78623 1.01112 0.98583 1.19808 0.92131 0.95114 0.98468 1.20610 0.97912 0.94299 1.03153 0.86001 0.91101 0.90575 0.78683 0.80500 0.88572 0.89006 0.87236 0.92436 0.90248 0.89640 0.89804 0.94955 0.93732 0.80853 0.93551 0.92581 0.90581 0.90819 0.89024 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.87 9.76 -92.68 -0.90 -5.77 16 3 C 0.08 1.40 6.68 22.56 0.15 1.56 16 4 C 0.04 0.65 10.21 84.83 0.87 1.52 16 5 N -0.46 -8.56 10.34 -194.39 -2.01 -10.57 16 6 C 0.10 2.01 8.96 85.02 0.76 2.78 16 7 C -0.15 -3.63 4.61 -20.00 -0.09 -3.73 16 8 C 0.56 17.32 6.18 86.79 0.54 17.86 16 9 O -0.57 -23.70 15.46 -3.87 -0.06 -23.76 16 10 N -0.60 -15.67 2.97 -822.30 -2.44 -18.12 16 11 C 0.10 1.61 5.59 86.36 0.48 2.09 16 12 C -0.13 -1.85 6.08 30.67 0.19 -1.67 16 13 C -0.11 -2.03 4.85 30.62 0.15 -1.89 16 14 C -0.09 -2.68 1.97 -10.72 -0.02 -2.70 16 15 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 16 C 0.18 6.35 2.47 44.99 0.11 6.47 16 17 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 18 C -0.16 -4.97 9.14 71.98 0.66 -4.31 16 19 N -0.75 -35.79 4.33 -322.95 -1.40 -37.18 16 20 C -0.21 -12.29 10.41 84.03 0.87 -11.42 16 21 H 0.07 4.02 8.06 -2.91 -0.02 3.99 16 22 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 23 N -0.98 -64.78 13.97 21.65 0.30 -64.47 16 24 Si 0.94 49.49 27.74 68.60 1.90 51.39 16 25 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 27 H -0.27 -13.70 6.52 99.48 0.65 -13.05 16 28 C 0.12 3.98 5.48 86.36 0.47 4.46 16 29 C -0.05 -1.09 5.96 -19.30 -0.12 -1.20 16 30 C -0.10 -2.54 9.10 71.24 0.65 -1.89 16 31 H 0.12 0.25 8.14 -2.39 -0.02 0.24 16 32 H 0.07 0.24 7.67 -2.39 -0.02 0.22 16 33 H 0.08 0.17 7.67 -2.39 -0.02 0.16 16 34 H 0.20 1.48 6.30 -2.91 -0.02 1.46 16 35 H 0.18 2.88 7.76 -2.91 -0.02 2.86 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.36 5.40 -2.39 -0.01 1.35 16 38 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 1.43 6.36 -2.38 -0.02 1.41 16 42 H 0.08 1.99 6.40 -2.39 -0.02 1.97 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.36 17.40 5.48 -92.71 -0.51 16.89 16 46 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 47 H 0.06 2.35 6.51 -2.39 -0.02 2.34 16 48 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.09 1.85 7.77 -2.39 -0.02 1.84 16 51 H 0.05 1.49 6.70 -2.39 -0.02 1.48 16 Total: -1.00 -80.89 398.22 3.02 -77.87 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.38 Total: 24.69 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 7.25 Total: 5.93 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -5.55 Total: -130.34 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.96 Total: -29.53 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 1.90 Total: 51.39 kcal Total: -80.89 3.02 -77.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268172671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.658 kcal (2) G-P(sol) polarization free energy of solvation -80.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds