Wall clock time and date at job start Wed Apr 1 2020 08:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35451 * 126.77704 * 2 1 4 4 C 1.41378 * 103.98670 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.80696 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46908 * 94.99458 * 5 4 3 7 7 C 1.46810 * 111.00266 * 45.31471 * 6 5 4 8 8 C 1.53256 * 109.44423 * 189.19382 * 7 6 5 9 9 C 1.53209 * 108.62213 * 304.39501 * 8 7 6 10 10 C 1.52766 * 117.79804 * 266.02134 * 9 8 7 11 11 C 1.52734 * 117.84782 * 197.01011 * 9 8 7 12 12 H 1.09003 * 117.50552 * 215.21915 * 11 9 8 13 13 C 1.50697 * 117.50572 * 0.27697 * 11 9 8 14 14 O 1.21286 * 120.00182 * 359.97438 * 13 11 9 15 15 N 1.34778 * 120.00024 * 180.02562 * 13 11 9 16 16 C 1.46501 * 120.00158 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47592 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47459 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00025 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99904 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00246 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99704 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47515 * 59.99441 * 22 20 18 24 24 H 1.48508 * 109.46953 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47030 * 299.99166 * 22 20 18 26 26 C 1.53217 * 114.73063 * 51.42993 * 9 8 7 27 27 C 1.46816 * 110.99793 * 170.00435 * 6 5 4 28 28 N 1.30176 * 106.39342 * 0.25601 * 4 3 2 29 29 O 1.20920 * 111.60722 * 359.54216 * 28 4 3 30 30 H 1.08997 * 109.47341 * 89.99783 * 1 2 3 31 31 H 1.08996 * 109.47407 * 210.00583 * 1 2 3 32 32 H 1.09004 * 109.46847 * 330.00170 * 1 2 3 33 33 H 1.07996 * 128.00663 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.46503 * 335.00193 * 5 4 3 35 35 H 1.08990 * 109.47308 * 214.99734 * 5 4 3 36 36 H 1.09001 * 109.47291 * 309.18674 * 7 6 5 37 37 H 1.08999 * 109.47292 * 69.20206 * 7 6 5 38 38 H 1.08998 * 109.61021 * 184.65575 * 8 7 6 39 39 H 1.09002 * 109.75642 * 64.22572 * 8 7 6 40 40 H 1.08994 * 117.50372 * 359.64162 * 10 9 8 41 41 H 1.09004 * 117.50018 * 144.66579 * 10 9 8 42 42 H 0.97001 * 120.00022 * 359.97438 * 15 13 11 43 43 H 1.09000 * 109.46686 * 300.00287 * 16 15 13 44 44 H 1.09002 * 109.46784 * 59.99463 * 16 15 13 45 45 H 1.09000 * 109.46863 * 300.00360 * 17 16 15 46 46 H 1.09002 * 109.46656 * 59.99637 * 17 16 15 47 47 H 0.97000 * 120.00163 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.60852 * 188.83658 * 26 9 8 49 49 H 1.08993 * 109.61438 * 68.31752 * 26 9 8 50 50 H 1.09002 * 109.47356 * 290.79831 * 27 6 5 51 51 H 1.08996 * 109.47233 * 50.81441 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9212 1.2999 0.0003 6 7 5.4042 1.4447 1.3801 7 6 5.2989 0.1754 2.1103 8 6 5.5911 0.4155 3.5955 9 6 6.9654 1.0807 3.7224 10 6 8.1751 0.1776 3.9568 11 6 7.6449 1.0592 5.0901 12 1 8.2387 1.9291 5.3709 13 6 6.9155 0.3775 6.2189 14 8 5.8302 -0.1270 6.0226 15 7 7.4687 0.3296 7.4470 16 6 6.7594 -0.3326 8.5446 17 6 7.5995 -0.2466 9.8203 18 6 6.8702 -0.9282 10.9492 19 1 5.9038 -1.3775 10.7743 20 6 7.4361 -0.9774 12.2054 21 7 8.6127 -0.4299 12.4185 22 14 6.5323 -1.8230 13.6045 23 1 6.3053 -3.2488 13.2572 24 1 7.3478 -1.7394 14.8428 25 1 5.2254 -1.1533 13.8259 26 6 7.1600 2.3224 2.8461 27 6 6.7751 1.9696 1.4052 28 7 3.4763 -0.7564 -0.0047 29 8 2.3095 -1.0736 0.0007 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 2.0345 2.1270 0.0004 34 1 4.7631 2.2868 -0.4347 35 1 5.6606 0.7574 -0.5885 36 1 4.2916 -0.2257 1.9983 37 1 6.0203 -0.5360 1.7083 38 1 5.5950 -0.5366 4.1261 39 1 4.8282 1.0679 4.0203 40 1 7.9961 -0.8952 4.0277 41 1 9.1173 0.4674 3.4916 42 1 8.3365 0.7334 7.6042 43 1 5.8005 0.1597 8.7067 44 1 6.5920 -1.3791 8.2900 45 1 8.5583 -0.7391 9.6578 46 1 7.7673 0.7999 10.0750 47 1 9.0111 -0.4648 13.3023 48 1 8.2039 2.6341 2.8800 49 1 6.5227 3.1291 3.2080 50 1 7.4605 1.2144 1.0204 51 1 6.8333 2.8635 0.7843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272773043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:42:02 Heat of formation + Delta-G solvation = 46.416706 kcal Electronic energy + Delta-G solvation = -30018.687154 eV Core-core repulsion = 25921.853153 eV Total energy + Delta-G solvation = -4096.834001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -45.22036 -40.39396 -38.67263 -36.63834 -34.78292 -34.36611 -33.56361 -32.82860 -31.04648 -30.61516 -29.54360 -28.14632 -26.38701 -25.26085 -23.77252 -23.32739 -23.16938 -22.11477 -20.88047 -20.17979 -19.76642 -18.69263 -17.99400 -17.43436 -16.85835 -16.28310 -16.10280 -15.48877 -15.29870 -15.00605 -14.80854 -14.53467 -14.32445 -14.29074 -14.02651 -13.72837 -13.61337 -13.49426 -13.09560 -12.94204 -12.83627 -12.76434 -12.35637 -12.26152 -12.23624 -11.94964 -11.57593 -11.36132 -11.23829 -11.19171 -11.01451 -10.69906 -10.65087 -10.37329 -10.32328 -9.97350 -9.85351 -9.67980 -9.56892 -9.38257 -9.01039 -8.53927 -8.50789 -8.32448 -6.08622 -4.11525 1.17722 1.89085 2.81927 2.83636 3.31658 3.35269 3.38226 3.57581 3.66193 3.87196 3.93785 4.10206 4.41700 4.53787 4.64324 4.69164 4.76914 4.80326 4.84625 4.86978 4.97468 5.07400 5.10670 5.17764 5.26423 5.28187 5.31239 5.34559 5.36561 5.44204 5.45958 5.54637 5.64216 5.66932 5.73448 5.81025 5.88870 5.94243 6.12273 6.26543 6.36384 6.37322 6.56820 6.75537 6.77417 6.86968 6.99822 7.52691 7.62664 7.89494 7.99469 8.07050 8.29015 8.72278 8.94289 9.53125 11.02882 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.001877 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.838495 B =14913.429179 C =16492.463795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.035 4.035 3 C -0.219 4.219 4 C 0.024 3.976 5 C 0.133 3.867 6 N -0.532 5.532 7 C 0.056 3.944 8 C -0.071 4.071 9 C -0.088 4.088 10 C -0.149 4.149 11 C -0.181 4.181 12 H 0.120 0.880 13 C 0.534 3.466 14 O -0.545 6.545 15 N -0.719 5.719 16 C 0.122 3.878 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.078 4.078 27 C 0.063 3.937 28 N -0.361 5.361 29 O 0.100 5.900 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.171 0.829 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.397 0.603 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.262 0.738 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.036 0.964 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.074 7.141 -30.049 31.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.241 4.241 4 C -0.135 4.135 5 C 0.005 3.995 6 N -0.259 5.259 7 C -0.072 4.072 8 C -0.109 4.109 9 C -0.089 4.089 10 C -0.186 4.186 11 C -0.203 4.203 12 H 0.138 0.862 13 C 0.320 3.680 14 O -0.424 6.424 15 N -0.368 5.368 16 C 0.000 4.000 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.115 4.115 27 C -0.065 4.065 28 N -0.065 5.065 29 O 0.033 5.967 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.189 0.811 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.231 0.769 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.055 0.945 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.155 6.100 -29.788 31.481 hybrid contribution 0.349 0.051 0.686 0.772 sum -7.806 6.152 -29.101 30.752 Atomic orbital electron populations 1.20341 0.83993 1.04864 1.03983 1.24528 0.96447 0.86155 1.02728 1.22372 0.91102 1.01006 1.09624 1.23340 0.97327 0.89910 1.02878 1.20410 0.89536 0.98597 0.90942 1.61945 1.22707 1.29238 1.11970 1.22316 1.01164 0.88959 0.94764 1.21382 0.93590 1.02514 0.93387 1.21471 0.94628 0.98064 0.94746 1.23074 0.98021 0.97870 0.99682 1.22344 1.05131 1.02964 0.89815 0.86167 1.19605 0.85591 0.79644 0.83186 1.90628 1.21265 1.47690 1.82836 1.46302 1.23036 1.57805 1.09633 1.21709 0.96143 0.95919 0.86220 1.19318 0.95318 0.97900 0.89943 1.21013 1.04697 1.36459 0.93894 0.92326 1.25000 0.94985 0.95473 0.98859 1.69945 1.16083 1.44580 1.22687 0.86567 0.79666 0.80120 0.81146 1.20117 1.21240 1.20102 1.21224 1.01131 0.96053 0.93115 1.22048 0.87714 0.99341 0.97353 1.73915 0.97033 1.16375 1.19206 1.84827 1.11279 1.33252 1.67354 0.89480 0.89735 0.88955 0.81128 0.88500 0.93155 0.90870 0.94917 0.88619 0.90866 0.88403 0.88136 0.76925 0.92609 0.92672 0.95967 0.95959 0.92801 0.91074 0.90324 0.94532 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.45 36.01 0.38 0.08 16 2 C -0.03 -0.28 7.49 -35.30 -0.26 -0.55 16 3 C -0.22 -1.84 11.06 -39.38 -0.44 -2.27 16 4 C 0.02 0.25 5.26 -82.10 -0.43 -0.18 16 5 C 0.13 1.19 5.86 -4.98 -0.03 1.16 16 6 N -0.53 -5.52 4.73 -235.89 -1.12 -6.64 16 7 C 0.06 0.70 5.02 -3.74 -0.02 0.68 16 8 C -0.07 -1.00 4.32 -26.49 -0.11 -1.12 16 9 C -0.09 -1.05 2.02 -154.55 -0.31 -1.36 16 10 C -0.15 -1.68 9.63 -26.82 -0.26 -1.94 16 11 C -0.18 -2.33 5.92 -91.88 -0.54 -2.87 16 12 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 13 C 0.53 9.20 7.59 -10.99 -0.08 9.12 16 14 O -0.55 -11.06 13.13 5.55 0.07 -10.99 16 15 N -0.72 -12.87 5.56 -60.29 -0.33 -13.21 16 16 C 0.12 2.66 5.61 -4.04 -0.02 2.63 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.08 -0.72 5.87 -26.49 -0.16 -0.88 16 27 C 0.06 0.54 5.45 -3.74 -0.02 0.52 16 28 N -0.36 -4.37 10.77 33.42 0.36 -4.01 16 29 O 0.10 1.09 11.20 17.17 0.19 1.28 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.07 1.02 5.58 -51.93 -0.29 0.73 16 37 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 38 H 0.10 1.59 6.00 -51.93 -0.31 1.28 16 39 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 40 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.40 6.22 8.47 -40.82 -0.35 5.87 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 51 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 LS Contribution 411.19 15.07 6.20 6.20 Total: -1.00 -33.21 411.19 -10.29 -43.50 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.51 Total: 3.09 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.87 Total: -10.21 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.35 Total: -49.42 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.27 Total: -9.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.21 -10.29 -43.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272773043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.918 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds