Wall clock time and date at job start Wed Apr 1 2020 08:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35451 * 126.77704 * 2 1 4 4 C 1.41378 * 103.98670 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.80696 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46908 * 94.99458 * 5 4 3 7 7 C 1.46810 * 111.00266 * 45.31471 * 6 5 4 8 8 C 1.53256 * 109.44423 * 189.19382 * 7 6 5 9 9 C 1.53209 * 108.62213 * 304.39501 * 8 7 6 10 10 C 1.52766 * 117.79804 * 266.02134 * 9 8 7 11 11 C 1.52734 * 117.84782 * 197.01011 * 9 8 7 12 12 H 1.09003 * 117.50552 * 215.21915 * 11 9 8 13 13 C 1.50697 * 117.50572 * 0.27697 * 11 9 8 14 14 O 1.21286 * 120.00182 * 359.97438 * 13 11 9 15 15 N 1.34778 * 120.00024 * 180.02562 * 13 11 9 16 16 C 1.46501 * 120.00158 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47592 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47459 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00025 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99904 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00246 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99704 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47515 * 59.99441 * 22 20 18 24 24 H 1.48508 * 109.46953 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47030 * 299.99166 * 22 20 18 26 26 C 1.53217 * 114.73063 * 51.42993 * 9 8 7 27 27 C 1.46816 * 110.99793 * 170.00435 * 6 5 4 28 28 N 1.30176 * 106.39342 * 0.25601 * 4 3 2 29 29 O 1.20920 * 111.60722 * 359.54216 * 28 4 3 30 30 H 1.08997 * 109.47341 * 89.99783 * 1 2 3 31 31 H 1.08996 * 109.47407 * 210.00583 * 1 2 3 32 32 H 1.09004 * 109.46847 * 330.00170 * 1 2 3 33 33 H 1.07996 * 128.00663 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.46503 * 335.00193 * 5 4 3 35 35 H 1.08990 * 109.47308 * 214.99734 * 5 4 3 36 36 H 1.09001 * 109.47291 * 309.18674 * 7 6 5 37 37 H 1.08999 * 109.47292 * 69.20206 * 7 6 5 38 38 H 1.08998 * 109.61021 * 184.65575 * 8 7 6 39 39 H 1.09002 * 109.75642 * 64.22572 * 8 7 6 40 40 H 1.08994 * 117.50372 * 359.64162 * 10 9 8 41 41 H 1.09004 * 117.50018 * 144.66579 * 10 9 8 42 42 H 0.97001 * 120.00022 * 359.97438 * 15 13 11 43 43 H 1.09000 * 109.46686 * 300.00287 * 16 15 13 44 44 H 1.09002 * 109.46784 * 59.99463 * 16 15 13 45 45 H 1.09000 * 109.46863 * 300.00360 * 17 16 15 46 46 H 1.09002 * 109.46656 * 59.99637 * 17 16 15 47 47 H 0.97000 * 120.00163 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.60852 * 188.83658 * 26 9 8 49 49 H 1.08993 * 109.61438 * 68.31752 * 26 9 8 50 50 H 1.09002 * 109.47356 * 290.79831 * 27 6 5 51 51 H 1.08996 * 109.47233 * 50.81441 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9212 1.2999 0.0003 6 7 5.4042 1.4447 1.3801 7 6 5.2989 0.1754 2.1103 8 6 5.5911 0.4155 3.5955 9 6 6.9654 1.0807 3.7224 10 6 8.1751 0.1776 3.9568 11 6 7.6449 1.0592 5.0901 12 1 8.2387 1.9291 5.3709 13 6 6.9155 0.3775 6.2189 14 8 5.8302 -0.1270 6.0226 15 7 7.4687 0.3296 7.4470 16 6 6.7594 -0.3326 8.5446 17 6 7.5995 -0.2466 9.8203 18 6 6.8702 -0.9282 10.9492 19 1 5.9038 -1.3775 10.7743 20 6 7.4361 -0.9774 12.2054 21 7 8.6127 -0.4299 12.4185 22 14 6.5323 -1.8230 13.6045 23 1 6.3053 -3.2488 13.2572 24 1 7.3478 -1.7394 14.8428 25 1 5.2254 -1.1533 13.8259 26 6 7.1600 2.3224 2.8461 27 6 6.7751 1.9696 1.4052 28 7 3.4763 -0.7564 -0.0047 29 8 2.3095 -1.0736 0.0007 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 2.0345 2.1270 0.0004 34 1 4.7631 2.2868 -0.4347 35 1 5.6606 0.7574 -0.5885 36 1 4.2916 -0.2257 1.9983 37 1 6.0203 -0.5360 1.7083 38 1 5.5950 -0.5366 4.1261 39 1 4.8282 1.0679 4.0203 40 1 7.9961 -0.8952 4.0277 41 1 9.1173 0.4674 3.4916 42 1 8.3365 0.7334 7.6042 43 1 5.8005 0.1597 8.7067 44 1 6.5920 -1.3791 8.2900 45 1 8.5583 -0.7391 9.6578 46 1 7.7673 0.7999 10.0750 47 1 9.0111 -0.4648 13.3023 48 1 8.2039 2.6341 2.8800 49 1 6.5227 3.1291 3.2080 50 1 7.4605 1.2144 1.0204 51 1 6.8333 2.8635 0.7843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272773043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:42:01 Heat of formation + Delta-G solvation = 24.853890 kcal Electronic energy + Delta-G solvation = -30019.622187 eV Core-core repulsion = 25921.853153 eV Total energy + Delta-G solvation = -4097.769034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.94370 -41.52949 -39.80817 -37.66381 -36.48365 -35.09543 -34.83013 -34.18355 -32.04284 -31.78599 -31.06178 -28.65728 -27.42317 -26.83367 -24.85071 -24.55778 -23.92018 -23.07022 -22.65461 -21.11738 -20.85456 -19.64157 -18.75841 -18.62851 -18.15071 -17.90563 -17.06505 -16.53313 -16.51524 -16.35595 -16.24749 -15.85983 -15.53047 -15.10580 -14.89111 -14.77131 -14.45127 -14.31313 -14.22759 -14.09789 -13.94867 -13.74553 -13.27373 -13.26851 -13.14771 -13.05801 -12.95003 -12.76190 -12.62983 -12.53225 -12.27733 -12.10869 -12.02713 -11.67329 -11.57912 -11.46946 -11.15111 -10.97449 -10.81907 -10.62046 -10.43501 -10.22379 -10.00986 -9.33643 -8.25966 -6.36842 0.50991 1.21128 1.39854 1.42357 1.50402 1.52470 2.21437 2.24507 2.42870 2.77609 2.96611 3.08264 3.18763 3.49848 3.58351 3.65919 3.83193 3.89197 4.07683 4.13137 4.19867 4.24466 4.27178 4.40335 4.44683 4.45023 4.48341 4.54990 4.58473 4.62842 4.72397 4.73949 4.79536 4.81724 4.85395 4.88874 4.91866 5.00678 5.04705 5.06102 5.15056 5.26248 5.27771 5.35245 5.42002 5.52087 5.55031 5.76547 5.95162 6.08033 6.13947 6.64966 6.75768 7.29503 7.31603 7.32305 8.85532 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.001877 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.838495 B =14913.429179 C =16492.463795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.035 4.035 3 C -0.228 4.228 4 C 0.013 3.987 5 C 0.134 3.866 6 N -0.538 5.538 7 C 0.071 3.929 8 C -0.065 4.065 9 C -0.089 4.089 10 C -0.134 4.134 11 C -0.186 4.186 12 H 0.152 0.848 13 C 0.528 3.472 14 O -0.582 6.582 15 N -0.716 5.716 16 C 0.142 3.858 17 C 0.024 3.976 18 C -0.549 4.549 19 H 0.057 0.943 20 C 0.007 3.993 21 N -0.925 5.925 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.268 1.268 26 C -0.071 4.071 27 C 0.061 3.939 28 N -0.399 5.399 29 O 0.078 5.922 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.196 0.804 34 H 0.126 0.874 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.024 0.976 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.137 0.863 42 H 0.410 0.590 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.008 0.992 46 H 0.009 0.991 47 H 0.266 0.734 48 H 0.101 0.899 49 H 0.074 0.926 50 H 0.039 0.961 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.780 8.893 -31.412 33.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C -0.250 4.250 4 C -0.145 4.145 5 C 0.006 3.994 6 N -0.264 5.264 7 C -0.057 4.057 8 C -0.103 4.103 9 C -0.090 4.090 10 C -0.171 4.171 11 C -0.207 4.207 12 H 0.169 0.831 13 C 0.317 3.683 14 O -0.463 6.463 15 N -0.366 5.366 16 C 0.018 3.982 17 C -0.014 4.014 18 C -0.588 4.588 19 H 0.075 0.925 20 C -0.192 4.192 21 N -0.564 5.564 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.193 1.193 26 C -0.109 4.109 27 C -0.066 4.066 28 N -0.106 5.106 29 O 0.014 5.986 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.213 0.787 34 H 0.143 0.857 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.155 0.845 42 H 0.246 0.754 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.075 0.925 48 H 0.119 0.881 49 H 0.093 0.907 50 H 0.058 0.942 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.859 7.863 -31.174 33.097 hybrid contribution 0.193 -0.503 1.076 1.203 sum -7.667 7.360 -30.098 31.919 Atomic orbital electron populations 1.20560 0.81147 1.05815 1.05526 1.25314 0.98001 0.85419 1.01059 1.22734 0.90287 1.02239 1.09724 1.23779 0.98775 0.89748 1.02239 1.20564 0.88845 0.99885 0.90057 1.61943 1.24268 1.27446 1.12731 1.22010 0.99671 0.90072 0.93982 1.21149 0.94811 1.00389 0.93961 1.21573 0.93407 0.99490 0.94537 1.23180 0.99172 0.96699 0.98060 1.22349 1.05869 1.04082 0.88389 0.83058 1.20437 0.85313 0.78946 0.83639 1.90633 1.23097 1.49141 1.83386 1.46144 1.23449 1.57815 1.09182 1.21181 0.95306 0.95447 0.86221 1.19122 0.94862 0.96467 0.90924 1.21426 1.05062 1.37049 0.95247 0.92488 1.25883 0.95801 0.96013 1.01502 1.70047 1.17372 1.45466 1.23525 0.85493 0.78578 0.79116 0.77826 1.19426 1.20391 1.19325 1.21273 1.02918 0.94104 0.92590 1.22184 0.86462 1.00480 0.97443 1.73898 0.97861 1.17678 1.21182 1.84771 1.11392 1.34519 1.67951 0.87480 0.89423 0.87292 0.78717 0.85653 0.93172 0.92892 0.95803 0.92072 0.93360 0.90281 0.84465 0.75420 0.93823 0.93977 0.97344 0.97249 0.92481 0.88107 0.90710 0.94224 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 71.24 0.74 0.26 16 2 C -0.03 -0.55 7.49 25.04 0.19 -0.36 16 3 C -0.23 -3.63 11.06 22.40 0.25 -3.38 16 4 C 0.01 0.26 5.26 43.58 0.23 0.49 16 5 C 0.13 2.19 5.86 85.56 0.50 2.70 16 6 N -0.54 -10.45 4.73 -900.23 -4.26 -14.71 16 7 C 0.07 1.84 5.02 86.41 0.43 2.27 16 8 C -0.07 -1.92 4.32 30.75 0.13 -1.79 16 9 C -0.09 -2.01 2.02 -52.21 -0.11 -2.12 16 10 C -0.13 -2.76 9.63 30.53 0.29 -2.47 16 11 C -0.19 -4.50 5.92 -11.61 -0.07 -4.57 16 12 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 13 C 0.53 18.46 7.59 87.66 0.67 19.13 16 14 O -0.58 -24.75 13.13 -3.05 -0.04 -24.79 16 15 N -0.72 -25.95 5.56 -463.06 -2.57 -28.53 16 16 C 0.14 6.39 5.61 86.38 0.48 6.87 16 17 C 0.02 1.23 5.09 29.85 0.15 1.38 16 18 C -0.55 -31.39 9.11 25.60 0.23 -31.15 16 19 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 20 C 0.01 0.40 5.46 84.65 0.46 0.86 16 21 N -0.92 -54.75 13.29 21.45 0.28 -54.46 16 22 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C -0.07 -1.09 5.87 30.75 0.18 -0.91 16 27 C 0.06 0.86 5.45 86.41 0.47 1.34 16 28 N -0.40 -10.08 10.77 -49.55 -0.53 -10.62 16 29 O 0.08 1.77 11.20 71.62 0.80 2.57 16 30 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 0.82 8.08 -2.39 -0.02 0.80 16 36 H 0.05 1.58 5.58 -2.39 -0.01 1.57 16 37 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 38 H 0.06 2.20 6.00 -2.39 -0.01 2.19 16 39 H 0.05 1.62 8.12 -2.39 -0.02 1.60 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.41 12.70 8.47 -92.71 -0.79 11.92 16 43 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 47 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.10 1.01 8.08 -2.39 -0.02 0.99 16 49 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.04 0.56 8.12 -2.39 -0.02 0.54 16 51 H 0.11 0.94 8.09 -2.39 -0.02 0.92 16 Total: -1.00 -75.54 411.19 1.10 -74.44 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.14 Total: 21.29 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 5.25 Total: -11.45 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -7.08 Total: -108.31 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.76 Total: -22.22 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -75.54 1.10 -74.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272773043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.299 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds