Wall clock time and date at job start Wed Apr 1 2020 05:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35922 * 117.00412 * 2 1 4 4 C 1.38856 * 120.40016 * 359.97438 * 3 2 1 5 5 N 1.31884 * 120.99823 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.94208 * 359.97438 * 5 4 3 7 7 C 1.39529 * 120.68886 * 0.02770 * 6 5 4 8 8 C 1.47857 * 120.52971 * 179.97438 * 7 6 5 9 9 O 1.21546 * 120.00500 * 126.36161 * 8 7 6 10 10 N 1.34778 * 119.99540 * 306.35424 * 8 7 6 11 11 C 1.46926 * 120.63193 * 354.02351 * 10 8 7 12 12 C 1.53196 * 108.77092 * 233.60730 * 11 10 8 13 13 C 1.53041 * 109.31566 * 305.36009 * 12 11 10 14 14 C 1.53040 * 109.53464 * 61.36735 * 13 12 11 15 15 H 1.08999 * 109.49926 * 58.62274 * 14 13 12 16 16 C 1.53003 * 109.49965 * 178.68492 * 14 13 12 17 17 N 1.46494 * 109.47265 * 184.93316 * 16 14 13 18 18 C 1.46495 * 120.00562 * 269.99976 * 17 16 14 19 19 C 1.36938 * 119.99820 * 90.00107 * 17 16 14 20 20 H 1.07999 * 120.00040 * 334.34394 * 19 17 16 21 21 C 1.38809 * 120.00370 * 154.61659 * 19 17 16 22 22 N 1.31625 * 119.99426 * 353.78659 * 21 19 17 23 23 Si 1.86795 * 120.00455 * 173.78484 * 21 19 17 24 24 H 1.48498 * 109.47212 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46972 * 119.99769 * 23 21 19 26 26 H 1.48499 * 109.47385 * 239.99807 * 23 21 19 27 27 C 1.46935 * 120.60434 * 174.03887 * 10 8 7 28 28 C 1.38842 * 120.40949 * 180.27942 * 3 2 1 29 29 C 1.50692 * 120.87824 * 0.02562 * 28 3 2 30 30 H 1.08997 * 109.47251 * 300.00058 * 1 2 3 31 31 H 1.08999 * 109.46773 * 59.99984 * 1 2 3 32 32 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.07997 * 119.50558 * 359.95565 * 4 3 2 34 34 H 1.08001 * 119.65691 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.59105 * 113.82276 * 11 10 8 36 36 H 1.09000 * 109.70197 * 353.45929 * 11 10 8 37 37 H 1.09000 * 109.49619 * 185.41383 * 12 11 10 38 38 H 1.08993 * 109.50242 * 65.31543 * 12 11 10 39 39 H 1.08998 * 109.46111 * 301.35302 * 13 12 11 40 40 H 1.08994 * 109.45079 * 181.37872 * 13 12 11 41 41 H 1.08998 * 109.46805 * 64.93459 * 16 14 13 42 42 H 1.08997 * 109.46721 * 304.93769 * 16 14 13 43 43 H 1.09004 * 109.47099 * 274.34046 * 18 17 16 44 44 H 1.09003 * 109.46993 * 34.33691 * 18 17 16 45 45 H 1.09001 * 109.47369 * 154.33622 * 18 17 16 46 46 H 0.97004 * 119.99501 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.61395 * 6.62095 * 27 10 8 48 48 H 1.08998 * 109.56633 * 246.19643 * 27 10 8 49 49 H 1.09007 * 109.47559 * 275.16068 * 29 28 3 50 50 H 1.08996 * 109.47378 * 35.16941 * 29 28 3 51 51 H 1.09005 * 109.47225 * 155.16597 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5621 0.0000 6 6 3.1953 3.6892 0.0015 7 6 4.0199 2.5636 0.0021 8 6 5.4911 2.7103 0.0032 9 8 6.1572 2.1496 0.8513 10 7 6.0937 3.4657 -0.9364 11 6 5.3188 4.0426 -2.0434 12 6 5.9763 3.6407 -3.3674 13 6 7.4491 4.0561 -3.3478 14 6 8.1706 3.3298 -2.2102 15 1 8.0787 2.2527 -2.3501 16 6 9.6498 3.7206 -2.2118 17 7 10.3629 2.9375 -1.1996 18 6 10.4828 3.4454 0.1692 19 6 10.9175 1.7307 -1.5331 20 1 10.5138 1.1600 -2.3564 21 6 11.9948 1.2382 -0.8095 22 7 12.5612 1.9828 0.1163 23 14 12.6407 -0.4813 -1.1496 24 1 11.8371 -1.1072 -2.2301 25 1 14.0618 -0.4014 -1.5733 26 1 12.5373 -1.3019 0.0837 27 6 7.5381 3.7274 -0.8727 28 6 3.4321 1.2935 -0.0058 29 6 4.2809 0.0484 -0.0129 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2197 2.3227 -0.0017 34 1 3.6367 4.6749 0.0023 35 1 5.3088 5.1290 -1.9554 36 1 4.2970 3.6641 -2.0131 37 1 5.4684 4.1404 -4.1923 38 1 5.9046 2.5607 -3.4962 39 1 7.5207 5.1328 -3.1942 40 1 7.9131 3.7932 -4.2984 41 1 9.7454 4.7822 -1.9836 42 1 10.0775 3.5202 -3.1941 43 1 11.3470 4.1062 0.2372 44 1 9.5809 3.9984 0.4318 45 1 10.6096 2.6094 0.8571 46 1 13.3143 1.6388 0.6217 47 1 7.9816 3.1389 -0.0695 48 1 7.7092 4.7880 -0.6886 49 1 4.4137 -0.3067 1.0092 50 1 3.7889 -0.7234 -0.6047 51 1 5.2543 0.2747 -0.4481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317044427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:26 Heat of formation + Delta-G solvation = -11.368305 kcal Electronic energy + Delta-G solvation = -31807.412884 eV Core-core repulsion = 27708.073137 eV Total energy + Delta-G solvation = -4099.339747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.32562 -39.91492 -38.34305 -37.49886 -35.49858 -34.00784 -33.12270 -31.71177 -31.04134 -29.89124 -28.16548 -27.96467 -26.42627 -25.53656 -25.42592 -23.54941 -22.72352 -22.31987 -20.96895 -19.98416 -19.26234 -18.08278 -17.73964 -16.72538 -16.56369 -16.48856 -16.23845 -15.87041 -15.05883 -14.93822 -14.56108 -14.43591 -14.13327 -13.98809 -13.68410 -13.42065 -13.30005 -13.14409 -12.99483 -12.97279 -12.71304 -12.46237 -12.36529 -12.32461 -11.92605 -11.85593 -11.55734 -11.24336 -11.00475 -10.87101 -10.79868 -10.61279 -10.46377 -10.29064 -10.15740 -9.87749 -9.84891 -9.75083 -9.67595 -9.41748 -8.75397 -8.50337 -8.40423 -6.61923 -5.66422 -3.13766 0.50325 0.92305 2.53221 2.81476 3.10047 3.42334 3.44029 3.49042 3.50880 4.06340 4.20663 4.35227 4.47835 4.54738 4.59127 4.70770 4.78859 4.84888 4.94567 5.01193 5.09318 5.11345 5.30245 5.33774 5.40992 5.48275 5.51256 5.57395 5.60161 5.73236 5.75799 5.89826 5.92664 5.95956 6.09437 6.12059 6.17381 6.19774 6.28265 6.41326 6.55548 6.72486 6.79577 6.79954 6.94426 7.00106 7.46571 7.51689 7.54848 7.80242 7.90236 8.20614 8.51074 9.32534 9.94936 10.44517 11.39522 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.002924 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.608786 B = 9572.981387 C =10602.648935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.071 3.929 4 C 0.031 3.969 5 N -0.454 5.454 6 C 0.097 3.903 7 C -0.136 4.136 8 C 0.561 3.439 9 O -0.515 6.515 10 N -0.601 5.601 11 C 0.104 3.896 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.122 4.122 15 H 0.073 0.927 16 C 0.159 3.841 17 N -0.601 5.601 18 C 0.160 3.840 19 C -0.249 4.249 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.909 5.909 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.121 3.879 28 C -0.025 4.025 29 C -0.111 4.111 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.050 0.950 43 H 0.014 0.986 44 H -0.005 1.005 45 H 0.061 0.939 46 H 0.251 0.749 47 H 0.108 0.892 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.453 2.819 -4.170 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.024 3.976 4 C -0.126 4.126 5 N -0.163 5.163 6 C -0.062 4.062 7 C -0.141 4.141 8 C 0.347 3.653 9 O -0.391 6.391 10 N -0.334 5.334 11 C -0.019 4.019 12 C -0.171 4.171 13 C -0.152 4.152 14 C -0.144 4.144 15 H 0.091 0.909 16 C 0.030 3.970 17 N -0.323 5.323 18 C 0.015 3.985 19 C -0.379 4.379 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.555 5.555 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.001 3.999 28 C -0.034 4.034 29 C -0.167 4.167 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.032 0.968 44 H 0.013 0.987 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.126 0.874 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.094 0.906 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.361 3.004 -3.578 25.787 hybrid contribution 0.541 -1.482 -0.166 1.586 sum -24.820 1.522 -3.744 25.147 Atomic orbital electron populations 1.23146 0.77938 1.04526 1.01557 1.86111 1.21552 1.25546 1.88502 1.19725 0.92187 0.86067 0.99649 1.23010 1.00598 0.87073 1.01957 1.67537 1.11742 1.25937 1.11093 1.22811 0.88398 0.98112 0.96844 1.20835 0.95273 0.93817 1.04191 1.17975 0.86163 0.79104 0.82089 1.90865 1.64938 1.45550 1.37724 1.48181 1.10020 1.50321 1.24903 1.21825 0.95098 0.98407 0.86540 1.21899 0.97091 1.01894 0.96187 1.21555 0.94055 1.00151 0.99431 1.22275 0.98443 1.00947 0.92718 0.90881 1.20709 0.88765 0.93880 0.93628 1.43866 1.62951 1.20239 1.05291 1.20898 0.93937 0.97815 0.85821 1.19191 1.08688 0.94866 1.15169 0.91689 1.25084 0.96689 0.98498 0.99340 1.70063 1.24195 1.35542 1.25676 0.86192 0.78482 0.84339 0.77588 1.20393 1.21756 1.21663 1.21948 0.76830 1.00615 1.00535 1.19741 0.90893 0.95613 0.97165 1.20730 0.98870 0.93340 1.03763 0.92341 0.92348 0.87757 0.82193 0.81954 0.91141 0.90406 0.91100 0.91664 0.92083 0.91720 0.94588 0.93164 0.96786 0.98716 0.92009 0.93856 0.87408 0.92055 0.89712 0.90617 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.90 9.76 -19.49 -0.19 -3.09 16 3 C 0.07 0.78 6.68 -39.13 -0.26 0.52 16 4 C 0.03 0.30 10.21 -17.30 -0.18 0.13 16 5 N -0.45 -5.13 10.34 -12.79 -0.13 -5.26 16 6 C 0.10 1.12 8.96 -17.13 -0.15 0.96 16 7 C -0.14 -1.81 4.62 -104.84 -0.48 -2.29 16 8 C 0.56 8.99 6.17 -12.32 -0.08 8.92 16 9 O -0.52 -10.42 15.48 5.33 0.08 -10.34 16 10 N -0.60 -8.72 2.97 -173.87 -0.52 -9.24 16 11 C 0.10 1.13 5.57 -3.71 -0.02 1.11 16 12 C -0.13 -1.43 6.08 -26.61 -0.16 -1.60 16 13 C -0.11 -1.44 5.17 -26.69 -0.14 -1.58 16 14 C -0.12 -2.05 2.54 -90.50 -0.23 -2.28 16 15 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.16 3.16 5.18 -4.04 -0.02 3.14 16 17 N -0.60 -15.12 2.76 -181.13 -0.50 -15.63 16 18 C 0.16 4.03 8.24 59.84 0.49 4.53 16 19 C -0.25 -6.93 9.66 -15.06 -0.15 -7.08 16 20 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 21 C 0.00 0.05 5.18 -17.43 -0.09 -0.04 16 22 N -0.91 -27.09 10.55 55.49 0.59 -26.51 16 23 Si 0.90 22.43 29.56 -169.99 -5.02 17.40 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 C 0.12 2.05 4.46 -3.70 -0.02 2.03 16 28 C -0.03 -0.32 5.96 -103.76 -0.62 -0.94 16 29 C -0.11 -1.44 9.10 36.00 0.33 -1.11 16 30 H 0.06 0.23 7.68 -51.93 -0.40 -0.16 16 31 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.16 1.06 6.30 -52.49 -0.33 0.73 16 34 H 0.16 1.58 7.75 -52.49 -0.41 1.17 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.78 5.40 -51.93 -0.28 0.50 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 42 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 43 H 0.01 0.37 7.84 -51.93 -0.41 -0.04 16 44 H -0.01 -0.12 5.88 -51.93 -0.31 -0.43 16 45 H 0.06 1.74 6.66 -51.93 -0.35 1.39 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 47 H 0.11 2.26 5.17 -51.93 -0.27 1.99 16 48 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 49 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.08 0.86 7.78 -51.93 -0.40 0.45 16 51 H 0.08 1.15 6.71 -51.93 -0.35 0.80 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -33.64 396.70 -8.58 -42.22 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.08 Total: -1.06 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.78 Total: 5.51 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.56 Total: -56.63 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.11 Total: -13.43 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.64 -8.58 -42.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317044427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.856 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds