Wall clock time and date at job start Wed Apr 1 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35922 * 117.00412 * 2 1 4 4 C 1.38856 * 120.40016 * 359.97438 * 3 2 1 5 5 N 1.31884 * 120.99823 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.94208 * 359.97438 * 5 4 3 7 7 C 1.39529 * 120.68886 * 0.02770 * 6 5 4 8 8 C 1.47857 * 120.52971 * 179.97438 * 7 6 5 9 9 O 1.21546 * 120.00500 * 126.36161 * 8 7 6 10 10 N 1.34778 * 119.99540 * 306.35424 * 8 7 6 11 11 C 1.46926 * 120.63193 * 354.02351 * 10 8 7 12 12 C 1.53196 * 108.77092 * 233.60730 * 11 10 8 13 13 C 1.53041 * 109.31566 * 305.36009 * 12 11 10 14 14 C 1.53040 * 109.53464 * 61.36735 * 13 12 11 15 15 H 1.08999 * 109.49926 * 58.62274 * 14 13 12 16 16 C 1.53003 * 109.49965 * 178.68492 * 14 13 12 17 17 N 1.46494 * 109.47265 * 184.93316 * 16 14 13 18 18 C 1.46495 * 120.00562 * 269.99976 * 17 16 14 19 19 C 1.36938 * 119.99820 * 90.00107 * 17 16 14 20 20 H 1.07999 * 120.00040 * 334.34394 * 19 17 16 21 21 C 1.38809 * 120.00370 * 154.61659 * 19 17 16 22 22 N 1.31625 * 119.99426 * 353.78659 * 21 19 17 23 23 Si 1.86795 * 120.00455 * 173.78484 * 21 19 17 24 24 H 1.48498 * 109.47212 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46972 * 119.99769 * 23 21 19 26 26 H 1.48499 * 109.47385 * 239.99807 * 23 21 19 27 27 C 1.46935 * 120.60434 * 174.03887 * 10 8 7 28 28 C 1.38842 * 120.40949 * 180.27942 * 3 2 1 29 29 C 1.50692 * 120.87824 * 0.02562 * 28 3 2 30 30 H 1.08997 * 109.47251 * 300.00058 * 1 2 3 31 31 H 1.08999 * 109.46773 * 59.99984 * 1 2 3 32 32 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.07997 * 119.50558 * 359.95565 * 4 3 2 34 34 H 1.08001 * 119.65691 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.59105 * 113.82276 * 11 10 8 36 36 H 1.09000 * 109.70197 * 353.45929 * 11 10 8 37 37 H 1.09000 * 109.49619 * 185.41383 * 12 11 10 38 38 H 1.08993 * 109.50242 * 65.31543 * 12 11 10 39 39 H 1.08998 * 109.46111 * 301.35302 * 13 12 11 40 40 H 1.08994 * 109.45079 * 181.37872 * 13 12 11 41 41 H 1.08998 * 109.46805 * 64.93459 * 16 14 13 42 42 H 1.08997 * 109.46721 * 304.93769 * 16 14 13 43 43 H 1.09004 * 109.47099 * 274.34046 * 18 17 16 44 44 H 1.09003 * 109.46993 * 34.33691 * 18 17 16 45 45 H 1.09001 * 109.47369 * 154.33622 * 18 17 16 46 46 H 0.97004 * 119.99501 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.61395 * 6.62095 * 27 10 8 48 48 H 1.08998 * 109.56633 * 246.19643 * 27 10 8 49 49 H 1.09007 * 109.47559 * 275.16068 * 29 28 3 50 50 H 1.08996 * 109.47378 * 35.16941 * 29 28 3 51 51 H 1.09005 * 109.47225 * 155.16597 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5621 0.0000 6 6 3.1953 3.6892 0.0015 7 6 4.0199 2.5636 0.0021 8 6 5.4911 2.7103 0.0032 9 8 6.1572 2.1496 0.8513 10 7 6.0937 3.4657 -0.9364 11 6 5.3188 4.0426 -2.0434 12 6 5.9763 3.6407 -3.3674 13 6 7.4491 4.0561 -3.3478 14 6 8.1706 3.3298 -2.2102 15 1 8.0787 2.2527 -2.3501 16 6 9.6498 3.7206 -2.2118 17 7 10.3629 2.9375 -1.1996 18 6 10.4828 3.4454 0.1692 19 6 10.9175 1.7307 -1.5331 20 1 10.5138 1.1600 -2.3564 21 6 11.9948 1.2382 -0.8095 22 7 12.5612 1.9828 0.1163 23 14 12.6407 -0.4813 -1.1496 24 1 11.8371 -1.1072 -2.2301 25 1 14.0618 -0.4014 -1.5733 26 1 12.5373 -1.3019 0.0837 27 6 7.5381 3.7274 -0.8727 28 6 3.4321 1.2935 -0.0058 29 6 4.2809 0.0484 -0.0129 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2197 2.3227 -0.0017 34 1 3.6367 4.6749 0.0023 35 1 5.3088 5.1290 -1.9554 36 1 4.2970 3.6641 -2.0131 37 1 5.4684 4.1404 -4.1923 38 1 5.9046 2.5607 -3.4962 39 1 7.5207 5.1328 -3.1942 40 1 7.9131 3.7932 -4.2984 41 1 9.7454 4.7822 -1.9836 42 1 10.0775 3.5202 -3.1941 43 1 11.3470 4.1062 0.2372 44 1 9.5809 3.9984 0.4318 45 1 10.6096 2.6094 0.8571 46 1 13.3143 1.6388 0.6217 47 1 7.9816 3.1389 -0.0695 48 1 7.7092 4.7880 -0.6886 49 1 4.4137 -0.3067 1.0092 50 1 3.7889 -0.7234 -0.6047 51 1 5.2543 0.2747 -0.4481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317044427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:21 Heat of formation + Delta-G solvation = -33.100519 kcal Electronic energy + Delta-G solvation = -31808.355263 eV Core-core repulsion = 27708.073137 eV Total energy + Delta-G solvation = -4100.282126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 5.29 seconds Orbital eigenvalues (eV) -42.25243 -40.97365 -39.23574 -38.73847 -37.23649 -34.96577 -34.57465 -33.22326 -32.11990 -31.36837 -29.10668 -28.53868 -28.22187 -27.29066 -26.64100 -24.52220 -23.99173 -23.37875 -22.45079 -21.38191 -20.33763 -19.04062 -18.66073 -18.58549 -17.64930 -17.38819 -17.07650 -16.94572 -16.86210 -16.17607 -15.78528 -15.52161 -15.22191 -15.19287 -14.93473 -14.79634 -14.74792 -14.23594 -14.04663 -14.02725 -13.89582 -13.88235 -13.71751 -13.13618 -13.02874 -12.99597 -12.83990 -12.76345 -12.57737 -12.38317 -12.30589 -12.09090 -11.98926 -11.86827 -11.73302 -11.55137 -11.38360 -11.28081 -10.63975 -10.60791 -10.45133 -9.67802 -9.52603 -8.69551 -7.84064 -5.32986 -0.39981 0.04896 1.41731 1.43505 1.44270 1.53304 1.83162 2.23688 2.48916 2.54762 3.22630 3.31183 3.38211 3.46160 3.56085 3.66363 3.88295 3.90167 3.98886 4.09853 4.12405 4.16079 4.35402 4.37250 4.40939 4.41964 4.48869 4.53890 4.60240 4.62174 4.77788 4.78030 4.82594 4.86328 4.89634 4.95578 4.95819 5.01511 5.07273 5.13581 5.22839 5.28601 5.37248 5.43862 5.53237 5.58180 5.61765 5.71576 6.13468 6.30694 6.36578 6.69763 7.00435 7.16549 7.89271 8.33010 9.20383 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.002924 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.608786 B = 9572.981387 C =10602.648935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.077 3.923 4 C 0.043 3.957 5 N -0.459 5.459 6 C 0.102 3.898 7 C -0.148 4.148 8 C 0.558 3.442 9 O -0.573 6.573 10 N -0.597 5.597 11 C 0.100 3.900 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.107 4.107 15 H 0.036 0.964 16 C 0.156 3.844 17 N -0.618 5.618 18 C 0.179 3.821 19 C -0.254 4.254 20 H 0.065 0.935 21 C -0.056 4.056 22 N -0.941 5.941 23 Si 0.966 3.034 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.295 1.295 27 C 0.127 3.873 28 C -0.048 4.048 29 C -0.103 4.103 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.197 0.803 34 H 0.181 0.819 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.049 0.951 43 H -0.006 1.006 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.247 0.753 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.090 0.910 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.151 4.065 -6.196 30.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.029 3.971 4 C -0.114 4.114 5 N -0.168 5.168 6 C -0.056 4.056 7 C -0.153 4.153 8 C 0.346 3.654 9 O -0.453 6.453 10 N -0.329 5.329 11 C -0.021 4.021 12 C -0.165 4.165 13 C -0.145 4.145 14 C -0.129 4.129 15 H 0.055 0.945 16 C 0.029 3.971 17 N -0.341 5.341 18 C 0.034 3.966 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.251 4.251 22 N -0.588 5.588 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.214 1.214 26 H -0.222 1.222 27 C 0.005 3.995 28 C -0.057 4.057 29 C -0.159 4.159 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.214 0.786 34 H 0.198 0.802 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.012 0.988 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.108 0.892 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -29.112 4.282 -5.672 29.967 hybrid contribution 1.521 -1.891 0.441 2.466 sum -27.591 2.391 -5.231 28.184 Atomic orbital electron populations 1.23524 0.75410 1.06321 1.03032 1.86107 1.24134 1.24920 1.88128 1.19691 0.91358 0.87166 0.98904 1.23570 1.02134 0.86071 0.99669 1.67650 1.11297 1.26513 1.11297 1.22993 0.88399 0.98042 0.96148 1.20604 0.93414 0.94884 1.06420 1.18459 0.87366 0.78193 0.81407 1.90829 1.66461 1.47896 1.40078 1.48230 1.09215 1.49822 1.25592 1.22155 0.95048 0.99983 0.84905 1.21891 0.95946 1.01276 0.97392 1.21514 0.94779 1.00784 0.97375 1.21994 0.96868 0.99260 0.94817 0.94533 1.20929 0.89859 0.94228 0.92053 1.44084 1.63485 1.20337 1.06221 1.20563 0.94319 0.96019 0.85677 1.19475 1.08269 0.96088 1.14635 0.91762 1.25844 0.97410 1.02185 0.99644 1.70227 1.24689 1.37103 1.26778 0.85208 0.77921 0.80087 0.77311 1.19165 1.21365 1.22213 1.21651 0.78410 1.00595 0.98824 1.19804 0.92177 0.95093 0.98592 1.20590 0.97786 0.94442 1.03117 0.90990 0.90591 0.86048 0.78594 0.80244 0.88099 0.89182 0.87353 0.93399 0.89781 0.91129 0.92659 0.93273 0.98810 0.95838 0.95846 0.94379 0.92212 0.90189 0.90741 0.89152 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.19 16 2 O -0.32 -5.41 9.76 -92.67 -0.90 -6.32 16 3 C 0.08 1.53 6.68 22.56 0.15 1.68 16 4 C 0.04 0.70 10.21 84.83 0.87 1.57 16 5 N -0.46 -8.92 10.34 -194.39 -2.01 -10.92 16 6 C 0.10 2.13 8.96 85.03 0.76 2.89 16 7 C -0.15 -3.89 4.62 -20.00 -0.09 -3.98 16 8 C 0.56 18.51 6.17 86.79 0.54 19.04 16 9 O -0.57 -24.97 15.48 -3.86 -0.06 -25.03 16 10 N -0.60 -17.12 2.97 -822.27 -2.44 -19.57 16 11 C 0.10 1.88 5.57 86.36 0.48 2.36 16 12 C -0.13 -2.35 6.08 30.67 0.19 -2.16 16 13 C -0.11 -2.41 5.17 30.62 0.16 -2.25 16 14 C -0.11 -3.61 2.54 -10.71 -0.03 -3.64 16 15 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 16 C 0.16 6.20 5.18 86.38 0.45 6.65 16 17 N -0.62 -32.15 2.76 -726.96 -2.01 -34.16 16 18 C 0.18 9.48 8.24 127.77 1.05 10.53 16 19 C -0.25 -14.61 9.66 84.03 0.81 -13.80 16 20 H 0.06 3.62 7.84 -2.91 -0.02 3.60 16 21 C -0.06 -3.33 5.18 84.86 0.44 -2.89 16 22 N -0.94 -58.38 10.55 21.65 0.23 -58.16 16 23 Si 0.97 47.54 29.56 68.60 2.03 49.57 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 27 C 0.13 4.33 4.46 86.36 0.39 4.71 16 28 C -0.05 -1.23 5.96 -19.31 -0.12 -1.34 16 29 C -0.10 -2.84 9.10 71.23 0.65 -2.19 16 30 H 0.07 0.31 7.68 -2.39 -0.02 0.29 16 31 H 0.08 0.26 7.67 -2.39 -0.02 0.24 16 32 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.20 1.65 6.30 -2.91 -0.02 1.63 16 34 H 0.18 2.98 7.75 -2.91 -0.02 2.96 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.53 5.40 -2.39 -0.01 1.52 16 37 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 42 H 0.05 1.95 8.04 -2.39 -0.02 1.94 16 43 H -0.01 -0.36 7.84 -2.38 -0.02 -0.38 16 44 H 0.02 1.08 5.88 -2.39 -0.01 1.07 16 45 H 0.02 1.38 6.66 -2.39 -0.02 1.36 16 46 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.06 2.65 5.17 -2.39 -0.01 2.64 16 48 H 0.08 2.40 8.13 -2.39 -0.02 2.38 16 49 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 50 H 0.09 2.11 7.78 -2.39 -0.02 2.09 16 51 H 0.05 1.57 6.71 -2.38 -0.02 1.56 16 Total: -1.00 -78.95 396.70 3.56 -75.39 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.93 Total: 10.83 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 7.80 Total: 18.36 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -6.24 Total: -122.81 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.96 Total: -31.35 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -78.95 3.56 -75.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317044427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.291 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.29 seconds