Wall clock time and date at job start Wed Apr 1 2020 05:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35916 * 117.00209 * 2 1 4 4 C 1.38847 * 120.40876 * 359.71726 * 3 2 1 5 5 N 1.31887 * 121.00451 * 179.74786 * 4 3 2 6 6 C 1.31685 * 121.93660 * 0.54666 * 5 4 3 7 7 C 1.39522 * 120.69121 * 359.72063 * 6 5 4 8 8 C 1.47856 * 120.52945 * 179.97438 * 7 6 5 9 9 O 1.21545 * 120.00446 * 229.89868 * 8 7 6 10 10 N 1.34772 * 119.99786 * 49.90020 * 8 7 6 11 11 C 1.46931 * 120.63214 * 5.33500 * 10 8 7 12 12 C 1.53624 * 108.54430 * 126.36324 * 11 10 8 13 13 C 1.53045 * 109.23969 * 54.86386 * 12 11 10 14 14 C 1.53039 * 109.53545 * 298.50828 * 13 12 11 15 15 H 1.09012 * 109.52526 * 301.40037 * 14 13 12 16 16 C 1.52995 * 109.50121 * 181.32023 * 14 13 12 17 17 N 1.46501 * 109.47491 * 175.16242 * 16 14 13 18 18 C 1.46497 * 120.00328 * 89.99650 * 17 16 14 19 19 C 1.36934 * 119.99789 * 269.99574 * 17 16 14 20 20 H 1.08000 * 120.00240 * 18.72097 * 19 17 16 21 21 C 1.38807 * 120.00057 * 198.71955 * 19 17 16 22 22 N 1.31615 * 120.00265 * 15.53436 * 21 19 17 23 23 Si 1.86799 * 120.00197 * 195.53489 * 21 19 17 24 24 H 1.48502 * 109.47256 * 89.99737 * 23 21 19 25 25 H 1.48504 * 109.47258 * 210.00233 * 23 21 19 26 26 H 1.48503 * 109.47272 * 330.00052 * 23 21 19 27 27 C 1.46924 * 120.63290 * 185.61494 * 10 8 7 28 28 C 1.38853 * 120.40579 * 179.97438 * 3 2 1 29 29 C 1.50696 * 120.87803 * 359.97438 * 28 3 2 30 30 H 1.09004 * 109.46559 * 60.00165 * 1 2 3 31 31 H 1.08997 * 109.47206 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47063 * 300.00251 * 1 2 3 33 33 H 1.08002 * 119.49423 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.64940 * 179.74697 * 6 5 4 35 35 H 1.08993 * 109.58857 * 246.20030 * 11 10 8 36 36 H 1.09009 * 109.58277 * 6.62857 * 11 10 8 37 37 H 1.08996 * 109.63990 * 294.87079 * 12 11 10 38 38 H 1.09006 * 109.45704 * 174.73675 * 12 11 10 39 39 H 1.08998 * 109.46071 * 178.49009 * 13 12 11 40 40 H 1.08999 * 109.44909 * 58.51890 * 13 12 11 41 41 H 1.09001 * 109.47023 * 295.16034 * 16 14 13 42 42 H 1.08995 * 109.47264 * 55.15904 * 16 14 13 43 43 H 1.09004 * 109.47058 * 95.31047 * 18 17 16 44 44 H 1.08995 * 109.47385 * 215.31656 * 18 17 16 45 45 H 1.09005 * 109.46798 * 335.32047 * 18 17 16 46 46 H 0.97005 * 120.00741 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.58567 * 353.37180 * 27 10 8 48 48 H 1.09002 * 109.59073 * 113.65852 * 27 10 8 49 49 H 1.09000 * 109.47436 * 89.49908 * 29 28 3 50 50 H 1.08996 * 109.47096 * 209.49928 * 29 28 3 51 51 H 1.09001 * 109.47280 * 329.49781 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2983 2.3809 -0.0059 5 7 1.8848 3.5621 -0.0010 6 6 3.1955 3.6891 -0.0010 7 6 4.0200 2.5635 -0.0005 8 6 5.4912 2.7102 -0.0011 9 8 6.1630 2.0952 -0.8059 10 7 6.0874 3.5258 0.8909 11 6 5.3027 4.1850 1.9438 12 6 5.9452 3.8683 3.3028 13 6 7.4201 4.2756 3.2706 14 6 8.1501 3.4698 2.1936 15 1 8.0517 2.4051 2.4058 16 6 9.6310 3.8538 2.1844 17 7 10.3507 3.0016 1.2347 18 6 10.4868 3.4157 -0.1639 19 6 10.8962 1.8177 1.6543 20 1 10.5565 1.3621 2.5727 21 6 11.8857 1.2033 0.8993 22 7 12.5153 1.8809 -0.0370 23 14 12.3239 -0.5854 1.2122 24 1 11.4781 -1.4588 0.3595 25 1 13.7549 -0.8092 0.8842 26 1 12.0871 -0.9104 2.6418 27 6 7.5335 3.7775 0.8254 28 6 3.4322 1.2934 0.0005 29 6 4.2810 0.0483 0.0017 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.2198 2.3225 -0.0101 34 1 3.6368 4.6748 -0.0011 35 1 5.3024 5.2624 1.7789 36 1 4.2793 3.8101 1.9256 37 1 5.8671 2.8000 3.5049 38 1 5.4310 4.4253 4.0861 39 1 7.8729 4.0771 4.2420 40 1 7.4981 5.3389 3.0439 41 1 9.7339 4.8973 1.8864 42 1 10.0478 3.7183 3.1823 43 1 11.4423 3.9220 -0.3016 44 1 10.4445 2.5379 -0.8086 45 1 9.6749 4.0957 -0.4221 46 1 13.2066 1.4514 -0.5649 47 1 7.9825 3.1337 0.0691 48 1 7.7114 4.8218 0.5687 49 1 4.4787 -0.2577 -1.0256 50 1 5.2244 0.2522 0.5080 51 1 3.7538 -0.7504 0.5236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317044428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:30 Heat of formation + Delta-G solvation = -32.126429 kcal Electronic energy + Delta-G solvation = -31833.722021 eV Core-core repulsion = 27733.482135 eV Total energy + Delta-G solvation = -4100.239887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 48.82 seconds Orbital eigenvalues (eV) -42.26288 -40.96900 -39.23232 -38.74522 -37.24754 -34.94739 -34.59550 -33.20514 -32.13924 -31.34168 -29.11138 -28.53725 -28.22527 -27.29124 -26.64673 -24.50944 -24.03654 -23.36261 -22.44576 -21.37358 -20.34087 -19.05099 -18.67483 -18.59742 -17.61528 -17.38444 -17.05864 -16.92986 -16.85717 -16.18599 -15.79154 -15.54498 -15.22654 -15.18713 -14.92226 -14.79953 -14.75927 -14.23899 -14.05283 -14.03181 -13.89293 -13.87054 -13.72758 -13.11236 -13.07258 -12.99382 -12.84507 -12.76613 -12.56328 -12.39462 -12.31876 -12.08716 -11.95256 -11.87539 -11.73380 -11.55894 -11.38643 -11.28938 -10.64908 -10.61217 -10.45079 -9.67213 -9.52297 -8.78818 -7.82523 -5.26197 -0.42029 0.04462 1.40668 1.44834 1.46692 1.51332 1.83217 2.23627 2.49557 2.55008 3.22235 3.29853 3.38060 3.45892 3.55865 3.65950 3.87555 3.90642 3.99035 4.09659 4.11291 4.15436 4.34956 4.37204 4.40836 4.42139 4.49773 4.53900 4.59665 4.61993 4.76819 4.77688 4.80813 4.85818 4.89466 4.93868 4.95596 5.01547 5.06555 5.13887 5.22442 5.28465 5.36684 5.43670 5.53126 5.58820 5.61515 5.71464 6.13206 6.30377 6.32580 6.69097 7.00986 7.15374 7.90098 8.31207 9.20754 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.003005 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.886762 B = 9316.429409 C =10473.084885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.076 3.924 4 C 0.044 3.956 5 N -0.459 5.459 6 C 0.103 3.897 7 C -0.150 4.150 8 C 0.557 3.443 9 O -0.573 6.573 10 N -0.597 5.597 11 C 0.098 3.902 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.108 4.108 15 H 0.036 0.964 16 C 0.156 3.844 17 N -0.618 5.618 18 C 0.183 3.817 19 C -0.253 4.253 20 H 0.068 0.932 21 C -0.058 4.058 22 N -0.939 5.939 23 Si 0.961 3.039 24 H -0.295 1.295 25 H -0.292 1.292 26 H -0.266 1.266 27 C 0.127 3.873 28 C -0.047 4.047 29 C -0.102 4.102 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.198 0.802 34 H 0.182 0.818 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.003 0.997 44 H 0.005 0.995 45 H 0.031 0.969 46 H 0.246 0.754 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.048 0.952 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.227 5.058 5.562 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.028 3.972 4 C -0.113 4.113 5 N -0.168 5.168 6 C -0.055 4.055 7 C -0.155 4.155 8 C 0.344 3.656 9 O -0.453 6.453 10 N -0.329 5.329 11 C -0.023 4.023 12 C -0.165 4.165 13 C -0.144 4.144 14 C -0.130 4.130 15 H 0.055 0.945 16 C 0.029 3.971 17 N -0.341 5.341 18 C 0.037 3.963 19 C -0.383 4.383 20 H 0.086 0.914 21 C -0.253 4.253 22 N -0.587 5.587 23 Si 0.790 3.210 24 H -0.222 1.222 25 H -0.218 1.218 26 H -0.190 1.190 27 C 0.005 3.995 28 C -0.055 4.055 29 C -0.159 4.159 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.214 0.786 34 H 0.199 0.801 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.021 0.979 44 H 0.024 0.976 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.067 0.933 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.182 5.237 5.067 30.078 hybrid contribution 1.409 -2.050 -0.431 2.525 sum -27.772 3.186 4.636 28.336 Atomic orbital electron populations 1.23525 0.75395 1.06321 1.03043 1.86105 1.24149 1.24934 1.88151 1.19691 0.91352 0.87186 0.98981 1.23575 1.02146 0.86065 0.99548 1.67661 1.11296 1.26476 1.11346 1.23035 0.88414 0.98083 0.95989 1.20608 0.93445 0.94879 1.06589 1.18460 0.87403 0.78732 0.80958 1.90828 1.66137 1.47057 1.41251 1.48212 1.09026 1.45665 1.29962 1.22321 0.95007 0.98928 0.86047 1.21966 0.95996 1.01556 0.96987 1.21516 0.94700 1.00276 0.97948 1.21997 0.96902 0.99329 0.94741 0.94522 1.20941 0.89751 0.93373 0.92990 1.44142 1.62901 1.21523 1.05563 1.20514 0.95526 0.95788 0.84424 1.19472 1.13631 0.97947 1.07293 0.91374 1.25646 0.97487 1.02221 0.99923 1.70247 1.26225 1.35776 1.26456 0.85347 0.76501 0.81065 0.78111 1.22237 1.21849 1.19026 1.21624 0.78425 1.00860 0.98553 1.19820 0.92180 0.95140 0.98407 1.20578 0.97882 0.94469 1.02938 0.90941 0.86062 0.90607 0.78564 0.80081 0.87927 0.89042 0.93439 0.87373 0.91131 0.89709 0.92424 0.93212 0.97886 0.97608 0.95051 0.94468 0.92395 0.90098 0.90879 0.93307 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.19 16 2 O -0.32 -5.49 9.68 -92.60 -0.90 -6.38 16 3 C 0.08 1.52 6.68 22.56 0.15 1.67 16 4 C 0.04 0.72 10.21 84.83 0.87 1.58 16 5 N -0.46 -8.85 10.34 -194.40 -2.01 -10.86 16 6 C 0.10 2.12 8.77 85.02 0.75 2.87 16 7 C -0.15 -3.96 4.78 -20.01 -0.10 -4.05 16 8 C 0.56 18.50 6.35 86.79 0.55 19.05 16 9 O -0.57 -25.01 15.28 -3.86 -0.06 -25.07 16 10 N -0.60 -17.06 2.97 -821.44 -2.44 -19.50 16 11 C 0.10 1.81 5.38 86.51 0.47 2.28 16 12 C -0.13 -2.33 6.10 30.82 0.19 -2.14 16 13 C -0.11 -2.37 5.17 30.62 0.16 -2.21 16 14 C -0.11 -3.59 2.55 -10.72 -0.03 -3.62 16 15 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 16 C 0.16 6.12 5.14 86.38 0.44 6.56 16 17 N -0.62 -31.98 2.77 -726.96 -2.01 -33.99 16 18 C 0.18 9.60 7.94 127.77 1.01 10.62 16 19 C -0.25 -14.54 9.68 84.03 0.81 -13.73 16 20 H 0.07 3.82 7.88 -2.91 -0.02 3.79 16 21 C -0.06 -3.46 5.06 84.86 0.43 -3.03 16 22 N -0.94 -58.59 10.60 21.65 0.23 -58.36 16 23 Si 0.96 47.97 29.58 68.60 2.03 50.00 16 24 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 25 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 27 C 0.13 4.31 4.45 86.37 0.38 4.69 16 28 C -0.05 -1.21 5.96 -19.30 -0.12 -1.33 16 29 C -0.10 -2.88 8.96 71.23 0.64 -2.24 16 30 H 0.07 0.31 7.66 -2.38 -0.02 0.29 16 31 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.27 7.69 -2.39 -0.02 0.25 16 33 H 0.20 1.65 6.30 -2.91 -0.02 1.63 16 34 H 0.18 2.93 7.44 -2.91 -0.02 2.91 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.53 5.19 -2.38 -0.01 1.52 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 41 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 42 H 0.05 1.95 8.04 -2.39 -0.02 1.93 16 43 H 0.00 0.16 7.43 -2.38 -0.02 0.15 16 44 H 0.01 0.31 7.13 -2.39 -0.02 0.29 16 45 H 0.03 1.41 6.28 -2.38 -0.01 1.39 16 46 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 47 H 0.06 2.57 5.35 -2.39 -0.01 2.55 16 48 H 0.08 2.39 8.10 -2.39 -0.02 2.38 16 49 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.05 1.62 6.86 -2.39 -0.02 1.60 16 51 H 0.09 2.14 7.64 -2.39 -0.02 2.12 16 Total: -1.00 -79.54 396.01 3.50 -76.04 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.93 Total: 9.95 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 7.72 Total: 18.17 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -6.23 Total: -122.71 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.96 Total: -31.45 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -79.54 3.50 -76.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317044428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.916 kcal (2) G-P(sol) polarization free energy of solvation -79.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 48.82 seconds