Wall clock time and date at job start Wed Apr 1 2020 05:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40195 * 120.37288 * 2 1 4 4 C 1.35345 * 119.95332 * 179.76751 * 3 2 1 5 5 N 1.35769 * 120.69700 * 0.50436 * 4 3 2 6 6 C 1.46503 * 119.61954 * 179.76364 * 5 4 3 7 7 C 1.50697 * 109.47056 * 269.72696 * 6 5 4 8 8 O 1.21283 * 120.00221 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00210 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.62471 * 5.52985 * 9 7 6 11 11 C 1.53171 * 108.76486 * 233.62789 * 10 9 7 12 12 C 1.53033 * 109.33022 * 305.35874 * 11 10 9 13 13 C 1.53039 * 109.52553 * 61.36962 * 12 11 10 14 14 C 1.46923 * 120.63328 * 185.54939 * 9 7 6 15 15 H 1.08994 * 109.58748 * 246.15471 * 14 9 7 16 16 C 1.52999 * 109.58810 * 6.58479 * 14 9 7 17 17 C 1.52994 * 109.47599 * 178.13923 * 16 14 9 18 18 N 1.46496 * 109.47769 * 184.84890 * 17 16 14 19 19 C 1.36934 * 120.00337 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00136 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99855 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99755 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00107 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47085 * 90.00135 * 23 21 19 25 25 H 1.48502 * 109.47081 * 209.99739 * 23 21 19 26 26 H 1.48496 * 109.46999 * 330.00131 * 23 21 19 27 27 C 1.34650 * 120.75125 * 359.49015 * 5 4 3 28 28 O 1.22065 * 119.98833 * 180.27840 * 27 5 4 29 29 C 1.36401 * 120.36623 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47649 * 269.98359 * 1 2 3 31 31 H 1.09009 * 109.46856 * 29.98395 * 1 2 3 32 32 H 1.08996 * 109.47410 * 149.97783 * 1 2 3 33 33 H 1.08002 * 120.02122 * 0.03658 * 3 2 1 34 34 H 1.08000 * 119.65424 * 180.27343 * 4 3 2 35 35 H 1.08998 * 109.46579 * 149.73114 * 6 5 4 36 36 H 1.08997 * 109.47571 * 29.72709 * 6 5 4 37 37 H 1.08992 * 109.59268 * 353.41874 * 10 9 7 38 38 H 1.09001 * 109.58941 * 113.84692 * 10 9 7 39 39 H 1.09006 * 109.47574 * 185.40882 * 11 10 9 40 40 H 1.08998 * 109.49757 * 65.32263 * 11 10 9 41 41 H 1.09004 * 109.46023 * 301.35671 * 12 11 10 42 42 H 1.09001 * 109.46345 * 181.38398 * 12 11 10 43 43 H 1.08994 * 109.49606 * 58.59851 * 13 12 11 44 44 H 1.09008 * 109.49601 * 178.69038 * 13 12 11 45 45 H 1.09002 * 109.47070 * 298.14391 * 16 14 9 46 46 H 1.09007 * 109.46926 * 58.13854 * 16 14 9 47 47 H 1.09001 * 109.46996 * 304.85094 * 17 16 14 48 48 H 1.09004 * 109.46745 * 64.84499 * 17 16 14 49 49 H 0.97000 * 119.99494 * 0.02562 * 18 17 16 50 50 H 0.96996 * 119.99777 * 179.97438 * 22 21 19 51 51 H 1.08003 * 120.34671 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5692 1.1996 0.0048 5 7 4.2538 0.0272 -0.0007 6 6 5.7187 0.0440 -0.0006 7 6 6.2211 0.0497 -1.4214 8 8 5.4331 0.0410 -2.3433 9 7 7.5461 0.0644 -1.6677 10 6 8.5132 -0.0468 -0.5672 11 6 9.4927 1.1278 -0.6514 12 6 10.1265 1.1600 -2.0439 13 6 9.0357 1.3644 -3.0978 14 6 8.0508 0.1923 -3.0415 15 1 8.5600 -0.7270 -3.3309 16 6 6.8834 0.4572 -3.9943 17 6 7.4166 0.6360 -5.4171 18 7 6.3144 1.0037 -6.3093 19 6 6.5532 1.2178 -7.6405 20 1 7.5541 1.1153 -8.0329 21 6 5.5088 1.5668 -8.4857 22 7 5.7385 1.7731 -9.7652 23 14 3.7776 1.7449 -7.8069 24 1 3.5604 3.1463 -7.3665 25 1 2.7934 1.4002 -8.8642 26 1 3.6028 0.8298 -6.6505 27 6 3.6016 -1.1509 -0.0007 28 8 4.2311 -2.1967 -0.0005 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3634 -0.8897 -0.5141 33 1 1.6823 2.1486 0.0006 34 1 4.1104 2.1342 0.0092 35 1 6.0922 -0.8417 0.5132 36 1 6.0719 0.9381 0.5131 37 1 7.9867 -0.0159 0.3866 38 1 9.0601 -0.9856 -0.6547 39 1 10.2724 1.0055 0.1005 40 1 8.9580 2.0608 -0.4733 41 1 10.6401 0.2170 -2.2311 42 1 10.8422 1.9803 -2.0983 43 1 8.5054 2.2952 -2.8967 44 1 9.4901 1.4105 -4.0875 45 1 6.1942 -0.3869 -3.9680 46 1 6.3608 1.3627 -3.6857 47 1 8.1699 1.4239 -5.4265 48 1 7.8636 -0.2980 -5.7576 49 1 5.4154 1.0962 -5.9568 50 1 5.0086 2.0165 -10.3558 51 1 1.6682 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319778735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:43 Heat of formation + Delta-G solvation = -8.048114 kcal Electronic energy + Delta-G solvation = -31590.873648 eV Core-core repulsion = 27491.677876 eV Total energy + Delta-G solvation = -4099.195772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.75794 -40.44056 -37.62012 -37.17214 -35.69183 -35.21118 -33.25100 -32.83919 -31.03031 -30.58651 -29.61321 -28.21786 -27.32514 -24.97677 -24.16417 -23.91704 -22.39781 -21.71818 -21.15077 -20.77117 -19.35068 -17.79341 -17.75491 -17.58759 -17.03584 -16.22888 -16.13183 -15.47859 -15.35557 -14.76341 -14.68635 -14.46804 -14.40037 -14.28543 -13.98386 -13.83926 -13.60918 -13.56364 -13.36816 -12.93404 -12.82667 -12.73575 -12.57336 -12.36139 -12.26503 -12.00595 -11.84372 -11.58364 -11.39431 -11.28273 -11.07936 -10.89368 -10.82669 -10.50042 -10.37527 -10.15618 -10.08262 -10.01152 -9.50772 -8.98191 -8.78454 -8.66851 -8.13869 -7.10913 -5.68613 -3.02326 0.62544 1.71376 2.21417 2.40208 2.81892 3.45988 3.48189 3.52643 3.54480 4.13382 4.23876 4.30852 4.42182 4.47227 4.58884 4.68032 4.69154 4.70925 4.79151 4.89182 5.00474 5.03778 5.07335 5.08693 5.23451 5.25850 5.32838 5.41525 5.51007 5.55719 5.60119 5.65170 5.67691 5.74613 5.81906 5.84555 5.88186 5.95934 6.08713 6.13796 6.17602 6.27116 6.30799 6.40825 6.54485 6.86300 6.93319 7.02451 7.22631 7.88198 8.03093 8.08970 8.51540 9.31885 10.05205 10.26631 11.50097 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007241 B = 0.004012 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3865.808825 B = 6977.353565 C =10162.179978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 C -0.227 4.227 4 C 0.143 3.857 5 N -0.482 5.482 6 C 0.070 3.930 7 C 0.499 3.501 8 O -0.504 6.504 9 N -0.606 5.606 10 C 0.105 3.895 11 C -0.135 4.135 12 C -0.121 4.121 13 C -0.134 4.134 14 C 0.154 3.846 15 H 0.074 0.926 16 C -0.121 4.121 17 C 0.151 3.849 18 N -0.755 5.755 19 C -0.240 4.240 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.937 5.937 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.275 1.275 27 C 0.523 3.477 28 O -0.553 6.553 29 C -0.248 4.248 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.025 0.975 48 H 0.021 0.979 49 H 0.362 0.638 50 H 0.258 0.742 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 0.442 30.629 30.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 C -0.250 4.250 4 C 0.017 3.983 5 N -0.193 5.193 6 C -0.056 4.056 7 C 0.284 3.716 8 O -0.379 6.379 9 N -0.341 5.341 10 C -0.018 4.018 11 C -0.173 4.173 12 C -0.159 4.159 13 C -0.172 4.172 14 C 0.051 3.949 15 H 0.092 0.908 16 C -0.158 4.158 17 C 0.024 3.976 18 N -0.400 5.400 19 C -0.370 4.370 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.586 5.586 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.201 1.201 27 C 0.326 3.674 28 O -0.436 6.436 29 C -0.269 4.269 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.177 0.823 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.195 0.805 50 H 0.068 0.932 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.808 -0.240 29.909 29.921 hybrid contribution -1.121 0.305 0.300 1.200 sum -0.313 0.064 30.209 30.211 Atomic orbital electron populations 1.20933 0.90337 1.03780 1.02943 1.20213 0.96827 0.92659 0.89063 1.20534 0.92364 0.98987 1.13137 1.21860 0.93637 0.89402 0.93410 1.45035 1.07080 1.07314 1.59822 1.21890 0.79907 1.06706 0.97100 1.20624 0.82721 0.77306 0.90901 1.90884 1.55400 1.47636 1.43939 1.48128 1.04753 1.72956 1.08250 1.21791 0.91301 0.99330 0.89377 1.21925 0.98638 0.98486 0.98238 1.21542 0.97899 1.02310 0.94113 1.22086 0.96443 0.98489 1.00152 1.21314 0.95516 0.98262 0.79796 0.90760 1.22284 0.96008 1.04128 0.93429 1.20794 0.91220 0.97194 0.88421 1.42699 1.05771 1.85154 1.06388 1.19086 0.96303 1.38863 0.82768 0.89303 1.24645 0.97448 1.01828 0.95320 1.69707 1.31371 1.54504 1.02986 0.86555 0.86056 0.78010 0.78139 1.21172 1.21747 1.20072 1.17065 0.89354 0.82378 0.78610 1.90948 1.69152 1.30262 1.53226 1.21915 0.92249 0.99587 1.13188 0.90157 0.90661 0.90747 0.83687 0.82251 0.85567 0.86419 0.90155 0.90781 0.90682 0.91456 0.91663 0.91520 0.91414 0.89567 0.89098 0.91581 0.95705 0.96092 0.80538 0.93174 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.03 36.00 0.36 -0.47 16 2 C 0.02 0.15 5.89 -104.55 -0.62 -0.46 16 3 C -0.23 -1.94 9.71 -39.88 -0.39 -2.33 16 4 C 0.14 1.27 10.28 -16.84 -0.17 1.09 16 5 N -0.48 -5.50 2.07 -121.07 -0.25 -5.75 16 6 C 0.07 0.65 4.17 -5.19 -0.02 0.63 16 7 C 0.50 6.56 7.60 -10.99 -0.08 6.48 16 8 O -0.50 -9.07 11.98 5.56 0.07 -9.00 16 9 N -0.61 -6.79 2.97 -165.24 -0.49 -7.28 16 10 C 0.11 0.73 6.35 -3.72 -0.02 0.71 16 11 C -0.13 -0.83 6.08 -26.63 -0.16 -0.99 16 12 C -0.12 -0.97 5.88 -26.69 -0.16 -1.13 16 13 C -0.13 -1.50 4.81 -26.61 -0.13 -1.63 16 14 C 0.15 2.04 3.03 -67.60 -0.20 1.84 16 15 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.12 -2.17 3.29 -26.73 -0.09 -2.26 16 17 C 0.15 3.19 6.02 -4.05 -0.02 3.16 16 18 N -0.75 -19.80 5.41 -59.91 -0.32 -20.12 16 19 C -0.24 -7.25 10.47 -15.06 -0.16 -7.41 16 20 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 21 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 22 N -0.94 -30.67 13.97 55.49 0.78 -29.89 16 23 Si 0.88 23.71 27.74 -169.99 -4.71 19.00 16 24 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 26 H -0.27 -7.24 6.52 56.52 0.37 -6.87 16 27 C 0.52 7.60 7.40 -15.45 -0.11 7.48 16 28 O -0.55 -9.91 16.64 4.86 0.08 -9.82 16 29 C -0.25 -3.04 9.65 -39.38 -0.38 -3.42 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.44 8.10 -51.92 -0.42 0.02 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.16 0.86 8.03 -52.49 -0.42 0.44 16 35 H 0.13 1.14 6.96 -51.93 -0.36 0.78 16 36 H 0.12 0.58 7.78 -51.93 -0.40 0.17 16 37 H 0.08 0.37 5.93 -51.93 -0.31 0.06 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 1.05 6.63 -51.92 -0.34 0.71 16 45 H 0.09 1.89 6.24 -51.93 -0.32 1.57 16 46 H 0.07 1.26 7.24 -51.92 -0.38 0.89 16 47 H 0.03 0.51 6.29 -51.93 -0.33 0.18 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.36 9.55 5.53 -40.82 -0.23 9.33 16 50 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 51 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -40.43 400.27 -9.46 -49.88 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.17 Total: 5.68 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.46 Total: 1.29 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.29 Total: -63.05 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.15 Total: -18.83 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.71 Total: 19.00 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -40.43 -9.46 -49.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319778735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.834 kcal (2) G-P(sol) polarization free energy of solvation -40.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds