Wall clock time and date at job start Wed Apr 1 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40195 * 120.37288 * 2 1 4 4 C 1.35345 * 119.95332 * 179.76751 * 3 2 1 5 5 N 1.35769 * 120.69700 * 0.50436 * 4 3 2 6 6 C 1.46503 * 119.61954 * 179.76364 * 5 4 3 7 7 C 1.50697 * 109.47056 * 269.72696 * 6 5 4 8 8 O 1.21283 * 120.00221 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00210 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.62471 * 5.52985 * 9 7 6 11 11 C 1.53171 * 108.76486 * 233.62789 * 10 9 7 12 12 C 1.53033 * 109.33022 * 305.35874 * 11 10 9 13 13 C 1.53039 * 109.52553 * 61.36962 * 12 11 10 14 14 C 1.46923 * 120.63328 * 185.54939 * 9 7 6 15 15 H 1.08994 * 109.58748 * 246.15471 * 14 9 7 16 16 C 1.52999 * 109.58810 * 6.58479 * 14 9 7 17 17 C 1.52994 * 109.47599 * 178.13923 * 16 14 9 18 18 N 1.46496 * 109.47769 * 184.84890 * 17 16 14 19 19 C 1.36934 * 120.00337 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00136 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99855 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99755 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00107 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47085 * 90.00135 * 23 21 19 25 25 H 1.48502 * 109.47081 * 209.99739 * 23 21 19 26 26 H 1.48496 * 109.46999 * 330.00131 * 23 21 19 27 27 C 1.34650 * 120.75125 * 359.49015 * 5 4 3 28 28 O 1.22065 * 119.98833 * 180.27840 * 27 5 4 29 29 C 1.36401 * 120.36623 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47649 * 269.98359 * 1 2 3 31 31 H 1.09009 * 109.46856 * 29.98395 * 1 2 3 32 32 H 1.08996 * 109.47410 * 149.97783 * 1 2 3 33 33 H 1.08002 * 120.02122 * 0.03658 * 3 2 1 34 34 H 1.08000 * 119.65424 * 180.27343 * 4 3 2 35 35 H 1.08998 * 109.46579 * 149.73114 * 6 5 4 36 36 H 1.08997 * 109.47571 * 29.72709 * 6 5 4 37 37 H 1.08992 * 109.59268 * 353.41874 * 10 9 7 38 38 H 1.09001 * 109.58941 * 113.84692 * 10 9 7 39 39 H 1.09006 * 109.47574 * 185.40882 * 11 10 9 40 40 H 1.08998 * 109.49757 * 65.32263 * 11 10 9 41 41 H 1.09004 * 109.46023 * 301.35671 * 12 11 10 42 42 H 1.09001 * 109.46345 * 181.38398 * 12 11 10 43 43 H 1.08994 * 109.49606 * 58.59851 * 13 12 11 44 44 H 1.09008 * 109.49601 * 178.69038 * 13 12 11 45 45 H 1.09002 * 109.47070 * 298.14391 * 16 14 9 46 46 H 1.09007 * 109.46926 * 58.13854 * 16 14 9 47 47 H 1.09001 * 109.46996 * 304.85094 * 17 16 14 48 48 H 1.09004 * 109.46745 * 64.84499 * 17 16 14 49 49 H 0.97000 * 119.99494 * 0.02562 * 18 17 16 50 50 H 0.96996 * 119.99777 * 179.97438 * 22 21 19 51 51 H 1.08003 * 120.34671 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5692 1.1996 0.0048 5 7 4.2538 0.0272 -0.0007 6 6 5.7187 0.0440 -0.0006 7 6 6.2211 0.0497 -1.4214 8 8 5.4331 0.0410 -2.3433 9 7 7.5461 0.0644 -1.6677 10 6 8.5132 -0.0468 -0.5672 11 6 9.4927 1.1278 -0.6514 12 6 10.1265 1.1600 -2.0439 13 6 9.0357 1.3644 -3.0978 14 6 8.0508 0.1923 -3.0415 15 1 8.5600 -0.7270 -3.3309 16 6 6.8834 0.4572 -3.9943 17 6 7.4166 0.6360 -5.4171 18 7 6.3144 1.0037 -6.3093 19 6 6.5532 1.2178 -7.6405 20 1 7.5541 1.1153 -8.0329 21 6 5.5088 1.5668 -8.4857 22 7 5.7385 1.7731 -9.7652 23 14 3.7776 1.7449 -7.8069 24 1 3.5604 3.1463 -7.3665 25 1 2.7934 1.4002 -8.8642 26 1 3.6028 0.8298 -6.6505 27 6 3.6016 -1.1509 -0.0007 28 8 4.2311 -2.1967 -0.0005 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3634 -0.8897 -0.5141 33 1 1.6823 2.1486 0.0006 34 1 4.1104 2.1342 0.0092 35 1 6.0922 -0.8417 0.5132 36 1 6.0719 0.9381 0.5131 37 1 7.9867 -0.0159 0.3866 38 1 9.0601 -0.9856 -0.6547 39 1 10.2724 1.0055 0.1005 40 1 8.9580 2.0608 -0.4733 41 1 10.6401 0.2170 -2.2311 42 1 10.8422 1.9803 -2.0983 43 1 8.5054 2.2952 -2.8967 44 1 9.4901 1.4105 -4.0875 45 1 6.1942 -0.3869 -3.9680 46 1 6.3608 1.3627 -3.6857 47 1 8.1699 1.4239 -5.4265 48 1 7.8636 -0.2980 -5.7576 49 1 5.4154 1.0962 -5.9568 50 1 5.0086 2.0165 -10.3558 51 1 1.6682 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319778735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:42 Heat of formation + Delta-G solvation = -35.818687 kcal Electronic energy + Delta-G solvation = -31592.077871 eV Core-core repulsion = 27491.677876 eV Total energy + Delta-G solvation = -4100.399995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.62803 -41.39157 -38.57750 -38.11747 -37.21626 -36.28793 -34.66881 -33.91849 -32.90143 -31.34248 -30.43555 -29.56319 -28.15633 -26.16548 -25.33792 -24.68641 -23.94640 -22.75182 -22.26120 -21.87501 -20.23803 -19.76388 -18.56951 -18.51746 -18.10797 -17.18715 -17.06575 -16.67188 -16.35309 -16.32928 -15.86970 -15.58127 -15.34548 -15.20711 -15.09626 -14.91450 -14.85317 -14.56269 -14.28245 -14.16455 -14.05899 -13.79596 -13.60162 -13.37240 -13.13423 -12.98718 -12.95265 -12.87961 -12.67990 -12.50344 -12.30543 -12.18673 -11.94749 -11.91748 -11.85275 -11.56409 -11.43182 -11.12278 -11.02957 -10.86449 -10.09981 -9.63709 -9.34535 -9.00420 -8.09275 -5.42029 -0.15046 0.89128 1.30700 1.33667 1.41984 1.42455 1.45620 1.96167 2.41900 2.63294 3.21412 3.27626 3.57848 3.61581 3.69299 3.80649 3.83309 3.88060 3.98550 4.04567 4.10006 4.10670 4.21512 4.30618 4.34496 4.36164 4.40700 4.49947 4.65904 4.69107 4.75406 4.76223 4.79426 4.86957 4.89057 4.98506 5.06636 5.11337 5.15587 5.20763 5.24123 5.31311 5.35636 5.46246 5.49178 5.61333 5.63661 5.68693 6.02255 6.15822 6.32496 6.93367 7.00619 7.07434 7.78244 7.97495 9.12347 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007241 B = 0.004012 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3865.808825 B = 6977.353565 C =10162.179978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.031 3.969 3 C -0.233 4.233 4 C 0.141 3.859 5 N -0.483 5.483 6 C 0.073 3.927 7 C 0.490 3.510 8 O -0.563 6.563 9 N -0.601 5.601 10 C 0.096 3.904 11 C -0.127 4.127 12 C -0.118 4.118 13 C -0.128 4.128 14 C 0.157 3.843 15 H 0.073 0.927 16 C -0.097 4.097 17 C 0.149 3.851 18 N -0.761 5.761 19 C -0.238 4.238 20 H 0.061 0.939 21 C -0.058 4.058 22 N -0.980 5.980 23 Si 0.952 3.048 24 H -0.271 1.271 25 H -0.288 1.288 26 H -0.270 1.270 27 C 0.504 3.496 28 O -0.610 6.610 29 C -0.294 4.294 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.180 0.820 34 H 0.202 0.798 35 H 0.130 0.870 36 H 0.174 0.826 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.037 0.963 48 H 0.015 0.985 49 H 0.361 0.639 50 H 0.260 0.740 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 2.722 34.191 34.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.027 3.973 3 C -0.255 4.255 4 C 0.015 3.985 5 N -0.192 5.192 6 C -0.051 4.051 7 C 0.277 3.723 8 O -0.442 6.442 9 N -0.334 5.334 10 C -0.025 4.025 11 C -0.165 4.165 12 C -0.156 4.156 13 C -0.166 4.166 14 C 0.053 3.947 15 H 0.091 0.909 16 C -0.135 4.135 17 C 0.022 3.978 18 N -0.406 5.406 19 C -0.369 4.369 20 H 0.079 0.921 21 C -0.250 4.250 22 N -0.630 5.630 23 Si 0.780 3.220 24 H -0.197 1.197 25 H -0.214 1.214 26 H -0.196 1.196 27 C 0.310 3.690 28 O -0.498 6.498 29 C -0.315 4.315 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.197 0.803 34 H 0.219 0.781 35 H 0.147 0.853 36 H 0.191 0.809 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.033 0.967 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.792 2.069 33.540 33.613 hybrid contribution -1.027 -0.362 -0.822 1.364 sum -0.235 1.707 32.718 32.764 Atomic orbital electron populations 1.21038 0.88176 1.04355 1.04430 1.20635 0.98480 0.92207 0.85949 1.21050 0.92668 0.99739 1.12079 1.22649 0.94326 0.89759 0.91780 1.45082 1.08104 1.07287 1.58698 1.22126 0.78845 1.09480 0.94682 1.21333 0.82773 0.76152 0.91997 1.90861 1.56849 1.50533 1.45991 1.48217 1.05134 1.71791 1.08286 1.22187 0.91018 1.00218 0.89035 1.21914 0.98987 0.98138 0.97462 1.21543 0.96892 1.02953 0.94204 1.22004 0.96788 0.97003 1.00814 1.21110 0.93916 0.99210 0.80463 0.90945 1.21972 0.96914 1.02217 0.92426 1.20998 0.90217 0.96955 0.89619 1.42789 1.07041 1.85201 1.05594 1.19097 0.95208 1.37984 0.84580 0.92120 1.25425 1.01794 1.02166 0.95597 1.69863 1.32775 1.55970 1.04414 0.85451 0.80579 0.78567 0.77453 1.19661 1.21430 1.19594 1.17425 0.90168 0.82735 0.78682 1.90888 1.70181 1.32138 1.56585 1.21914 0.91876 1.00669 1.17054 0.88019 0.89081 0.91138 0.80312 0.78148 0.85251 0.80861 0.86962 0.90224 0.87766 0.90910 0.91342 0.90401 0.91980 0.91133 0.92223 0.92653 0.94479 0.96698 0.80603 0.93118 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 10.03 71.24 0.71 -0.69 16 2 C 0.03 0.57 5.89 -19.82 -0.12 0.45 16 3 C -0.23 -3.29 9.71 22.08 0.21 -3.07 16 4 C 0.14 2.06 10.28 83.42 0.86 2.91 16 5 N -0.48 -10.37 2.07 -655.07 -1.36 -11.73 16 6 C 0.07 1.19 4.17 85.63 0.36 1.55 16 7 C 0.49 12.36 7.60 87.66 0.67 13.02 16 8 O -0.56 -20.62 11.98 -3.04 -0.04 -20.65 16 9 N -0.60 -12.44 2.97 -795.09 -2.36 -14.80 16 10 C 0.10 1.00 6.35 86.36 0.55 1.54 16 11 C -0.13 -1.01 6.08 30.66 0.19 -0.82 16 12 C -0.12 -1.55 5.88 30.62 0.18 -1.37 16 13 C -0.13 -2.71 4.81 30.67 0.15 -2.56 16 14 C 0.16 4.09 3.03 44.97 0.14 4.23 16 15 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 16 C -0.10 -3.57 3.29 30.59 0.10 -3.47 16 17 C 0.15 6.41 6.02 86.38 0.52 6.93 16 18 N -0.76 -40.65 5.41 -343.47 -1.86 -42.51 16 19 C -0.24 -14.73 10.47 84.03 0.88 -13.85 16 20 H 0.06 4.02 8.06 -2.91 -0.02 4.00 16 21 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 22 N -0.98 -65.41 13.97 21.65 0.30 -65.10 16 23 Si 0.95 49.60 27.74 68.60 1.90 51.50 16 24 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 26 H -0.27 -13.75 6.52 99.48 0.65 -13.10 16 27 C 0.50 15.14 7.40 84.82 0.63 15.76 16 28 O -0.61 -23.22 16.64 -5.53 -0.09 -23.31 16 29 C -0.29 -7.51 9.65 22.40 0.22 -7.30 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.78 8.10 -2.38 -0.02 0.76 16 32 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 33 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 34 H 0.20 1.15 8.03 -2.91 -0.02 1.13 16 35 H 0.13 2.09 6.96 -2.39 -0.02 2.08 16 36 H 0.17 0.78 7.78 -2.39 -0.02 0.76 16 37 H 0.11 0.48 5.93 -2.39 -0.01 0.47 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.69 6.63 -2.38 -0.02 1.68 16 45 H 0.06 2.60 6.24 -2.39 -0.01 2.58 16 46 H 0.05 2.14 7.24 -2.38 -0.02 2.12 16 47 H 0.04 1.53 6.29 -2.39 -0.02 1.52 16 48 H 0.01 0.66 8.14 -2.39 -0.02 0.65 16 49 H 0.36 19.22 5.53 -92.71 -0.51 18.70 16 50 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 51 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -94.97 400.27 3.56 -91.41 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.36 Total: 25.11 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.70 Total: 10.09 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -5.28 Total: -134.15 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.13 Total: -43.96 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.90 Total: 51.50 kcal Total: -94.97 3.56 -91.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319778735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.590 kcal (2) G-P(sol) polarization free energy of solvation -94.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds