Wall clock time and date at job start Wed Apr 1 2020 05:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35921 * 116.99804 * 2 1 4 4 C 1.38849 * 120.40704 * 0.02562 * 3 2 1 5 5 N 1.31881 * 120.99788 * 179.72035 * 4 3 2 6 6 C 1.31687 * 121.94201 * 0.28563 * 5 4 3 7 7 C 1.39524 * 120.69226 * 359.97438 * 6 5 4 8 8 C 1.47851 * 120.53128 * 180.02562 * 7 6 5 9 9 O 1.21555 * 120.00066 * 173.81944 * 8 7 6 10 10 N 1.34776 * 120.00402 * 353.81836 * 8 7 6 11 11 C 1.46499 * 120.00535 * 185.18266 * 10 8 7 12 12 C 1.52996 * 109.46970 * 298.09223 * 11 10 8 13 13 N 1.46505 * 109.47381 * 303.80426 * 12 11 10 14 14 C 1.36932 * 120.00125 * 185.19488 * 13 12 11 15 15 H 1.07995 * 120.00300 * 359.97438 * 14 13 12 16 16 C 1.38818 * 120.00045 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99570 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46879 * 60.00387 * 18 16 14 20 20 H 1.48499 * 109.47113 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47519 * 300.00111 * 18 16 14 22 22 C 1.52998 * 109.47202 * 178.09054 * 11 10 8 23 23 C 1.52996 * 109.47296 * 299.99970 * 22 11 10 24 24 C 1.52999 * 109.47417 * 300.00407 * 23 22 11 25 25 C 1.52998 * 109.47220 * 59.99547 * 24 23 22 26 26 C 1.52996 * 109.47042 * 300.00237 * 25 24 23 27 27 C 1.38852 * 120.40149 * 180.27859 * 3 2 1 28 28 C 1.50696 * 120.88390 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47154 * 59.99814 * 1 2 3 30 30 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47182 * 299.99722 * 1 2 3 32 32 H 1.07997 * 119.50057 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.65375 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99514 * 5.18490 * 10 8 7 35 35 H 1.09001 * 109.47495 * 63.80432 * 12 11 10 36 36 H 1.09004 * 109.47332 * 183.80616 * 12 11 10 37 37 H 0.97003 * 119.99515 * 5.19221 * 13 12 11 38 38 H 0.96998 * 119.99846 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46984 * 60.00061 * 22 11 10 40 40 H 1.09000 * 109.47190 * 179.97438 * 22 11 10 41 41 H 1.08999 * 109.47227 * 179.97438 * 23 22 11 42 42 H 1.09001 * 109.47100 * 60.00188 * 23 22 11 43 43 H 1.09000 * 109.46285 * 299.99916 * 24 23 22 44 44 H 1.08993 * 109.47314 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.46984 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.46893 * 60.00466 * 25 24 23 47 47 H 1.09000 * 109.47688 * 300.00381 * 26 25 24 48 48 H 1.09000 * 109.47114 * 179.97438 * 26 25 24 49 49 H 1.08997 * 109.47477 * 263.82900 * 28 27 3 50 50 H 1.09005 * 109.47126 * 23.82704 * 28 27 3 51 51 H 1.09000 * 109.47452 * 143.82608 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8846 3.5621 0.0061 6 6 3.1953 3.6891 0.0057 7 6 4.0199 2.5636 -0.0001 8 6 5.4911 2.7104 0.0002 9 8 6.1998 1.7287 0.1085 10 7 6.0465 3.9325 -0.1198 11 6 7.5007 4.0683 -0.2338 12 6 8.1647 3.5234 1.0323 13 7 7.6258 4.2182 2.2041 14 6 8.1483 3.9728 3.4458 15 1 8.9573 3.2669 3.5614 16 6 7.6380 4.6316 4.5561 17 7 6.6523 5.4924 4.4151 18 14 8.3503 4.2964 6.2501 19 1 9.7937 4.6453 6.2580 20 1 7.6370 5.1203 7.2589 21 1 8.1869 2.8579 6.5801 22 6 7.8632 5.5449 -0.4047 23 6 7.1992 6.0898 -1.6708 24 6 7.6914 5.3000 -2.8852 25 6 7.3290 3.8235 -2.7143 26 6 7.9930 3.2785 -1.4483 27 6 3.4321 1.2935 -0.0058 28 6 4.2810 0.0485 -0.0128 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2197 2.3226 0.0014 33 1 3.6366 4.6748 0.0099 34 1 5.4833 4.7222 -0.1305 35 1 7.9623 2.4557 1.1180 36 1 9.2411 3.6858 0.9768 37 1 6.8988 4.8520 2.1003 38 1 6.2955 5.9524 5.1909 39 1 7.5125 6.1075 0.4605 40 1 8.9452 5.6460 -0.4891 41 1 7.4571 7.1419 -1.7922 42 1 6.1173 5.9888 -1.5859 43 1 8.7734 5.4011 -2.9700 44 1 7.2188 5.6886 -3.7872 45 1 7.6800 3.2607 -3.5793 46 1 6.2470 3.7224 -2.6295 47 1 9.0750 3.3796 -1.5331 48 1 7.7344 2.2267 -1.3263 49 1 4.5814 -0.1923 1.0069 50 1 3.7071 -0.7803 -0.4277 51 1 5.1684 0.2171 -0.6228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329828408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:30 Heat of formation + Delta-G solvation = -31.265744 kcal Electronic energy + Delta-G solvation = -32453.755568 eV Core-core repulsion = 28353.553003 eV Total energy + Delta-G solvation = -4100.202564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 33.40 seconds Orbital eigenvalues (eV) -41.10701 -40.12235 -38.35838 -37.43769 -34.66794 -33.69307 -33.27463 -31.67861 -30.67123 -30.33687 -29.10654 -27.85884 -27.62017 -25.23852 -24.08258 -22.97315 -22.48810 -22.18759 -20.98397 -20.37207 -18.91808 -18.33205 -17.37912 -17.12265 -16.51667 -16.34742 -16.14359 -15.36296 -15.05045 -14.86154 -14.41108 -14.24251 -14.17892 -13.94313 -13.55529 -13.35621 -13.19271 -13.02399 -12.90819 -12.68765 -12.64824 -12.24777 -12.22254 -12.10075 -12.04535 -11.73720 -11.64878 -11.55251 -11.34077 -10.94187 -10.83048 -10.74336 -10.50371 -10.16895 -10.07037 -9.97464 -9.70502 -9.60515 -9.43720 -9.07798 -8.71043 -8.53772 -8.50266 -6.79153 -5.69511 -2.95287 0.64289 1.18121 2.88054 3.08477 3.48122 3.50206 3.52930 3.54316 3.86855 4.27036 4.43509 4.65239 4.68764 4.74415 4.82751 4.86549 4.90871 4.93465 4.96498 5.15527 5.16104 5.27502 5.35721 5.36884 5.56443 5.60892 5.66174 5.67993 5.72951 5.77377 5.81943 5.88420 5.93483 6.13243 6.15351 6.17733 6.22139 6.26595 6.34079 6.36051 6.40911 6.53318 6.55363 6.61680 6.70317 6.95876 7.00305 7.15869 7.77598 7.78468 7.87488 8.50209 8.56473 9.61530 10.20250 10.55753 11.53676 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007896 B = 0.004295 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3545.228500 B = 6517.871468 C = 8682.872928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.062 3.938 4 C 0.036 3.964 5 N -0.457 5.457 6 C 0.105 3.895 7 C -0.145 4.145 8 C 0.571 3.429 9 O -0.517 6.517 10 N -0.701 5.701 11 C 0.179 3.821 12 C 0.140 3.860 13 N -0.725 5.725 14 C -0.230 4.230 15 H 0.067 0.933 16 C -0.015 4.015 17 N -0.936 5.936 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.288 1.288 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.128 4.128 27 C -0.012 4.012 28 C -0.112 4.112 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.395 0.605 35 H 0.044 0.956 36 H 0.024 0.976 37 H 0.381 0.619 38 H 0.253 0.747 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.063 0.937 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 -5.175 -16.926 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.014 3.986 4 C -0.121 4.121 5 N -0.166 5.166 6 C -0.055 4.055 7 C -0.150 4.150 8 C 0.357 3.643 9 O -0.394 6.394 10 N -0.352 5.352 11 C 0.093 3.907 12 C 0.012 3.988 13 N -0.369 5.369 14 C -0.362 4.362 15 H 0.085 0.915 16 C -0.211 4.211 17 N -0.585 5.585 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.167 4.167 27 C -0.021 4.021 28 C -0.168 4.168 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.231 0.769 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.215 0.785 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.100 0.900 50 H 0.081 0.919 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.139 -5.406 -16.723 19.809 hybrid contribution -0.071 -0.019 1.195 1.198 sum -9.209 -5.425 -15.527 18.851 Atomic orbital electron populations 1.23118 0.78186 1.04311 1.01514 1.86089 1.21348 1.25668 1.88763 1.19754 0.92391 0.85932 1.00476 1.23006 1.00521 0.87176 1.01439 1.67508 1.11985 1.25895 1.11261 1.22838 0.88668 0.98234 0.95737 1.20848 0.95423 0.93578 1.05171 1.17668 0.86176 0.83796 0.76644 1.90677 1.62544 1.37749 1.48459 1.45829 1.08012 1.07504 1.73889 1.20604 0.78867 0.95512 0.95680 1.21127 0.95122 0.97023 0.85535 1.42199 1.42418 1.50442 1.01869 1.19180 1.13209 1.19140 0.84650 0.91459 1.24663 0.98978 0.99765 0.97648 1.69631 1.28636 1.31107 1.29170 0.86302 0.78205 0.77391 0.84531 1.21396 1.21816 1.21448 1.21782 1.01600 0.94282 0.98065 1.21563 1.00152 0.99169 0.94858 1.21538 1.00938 0.95477 0.97572 1.21461 1.00667 0.95560 0.97449 1.21892 1.00162 1.01398 0.93220 1.19832 0.90665 0.96014 0.95581 1.20901 0.99336 0.92288 1.04228 0.92497 0.87922 0.92368 0.82375 0.82231 0.76949 0.93818 0.95815 0.78483 0.93691 0.89998 0.90508 0.91952 0.92328 0.92105 0.92607 0.92554 0.92308 0.91291 0.89823 0.90028 0.91850 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.16 16 2 O -0.31 -3.51 9.57 -19.49 -0.19 -3.69 16 3 C 0.06 0.82 6.68 -39.13 -0.26 0.55 16 4 C 0.04 0.44 10.21 -17.30 -0.18 0.27 16 5 N -0.46 -6.51 10.34 -12.80 -0.13 -6.64 16 6 C 0.10 1.50 10.70 -17.13 -0.18 1.31 16 7 C -0.14 -2.24 5.89 -104.84 -0.62 -2.86 16 8 C 0.57 9.61 7.13 -12.33 -0.09 9.52 16 9 O -0.52 -9.79 9.78 5.32 0.05 -9.74 16 10 N -0.70 -10.73 3.40 -48.54 -0.16 -10.90 16 11 C 0.18 2.83 0.32 -131.82 -0.04 2.78 16 12 C 0.14 2.91 4.92 -4.04 -0.02 2.89 16 13 N -0.73 -18.21 5.12 -59.91 -0.31 -18.52 16 14 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 17 N -0.94 -28.30 13.06 55.49 0.72 -27.57 16 18 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 C -0.12 -1.72 4.64 -26.73 -0.12 -1.84 16 23 C -0.12 -1.36 5.75 -26.73 -0.15 -1.51 16 24 C -0.12 -1.24 5.92 -26.73 -0.16 -1.39 16 25 C -0.11 -1.32 5.77 -26.73 -0.15 -1.47 16 26 C -0.13 -1.78 4.49 -26.73 -0.12 -1.90 16 27 C -0.01 -0.18 5.97 -103.76 -0.62 -0.80 16 28 C -0.11 -1.60 8.69 36.00 0.31 -1.29 16 29 H 0.06 0.31 7.68 -51.93 -0.40 -0.09 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 32 H 0.16 1.44 6.30 -52.49 -0.33 1.11 16 33 H 0.16 1.97 6.44 -52.49 -0.34 1.63 16 34 H 0.39 5.39 5.47 -40.82 -0.22 5.16 16 35 H 0.04 1.01 6.25 -51.93 -0.32 0.69 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.38 9.83 6.58 -40.82 -0.27 9.56 16 38 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.08 1.38 7.22 -51.93 -0.37 1.00 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.63 6.90 -51.93 -0.36 0.28 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.71 7.60 -51.93 -0.39 0.32 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.08 1.31 6.21 -51.93 -0.32 0.99 16 49 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.06 0.80 7.45 -51.93 -0.39 0.41 16 51 H 0.10 1.49 5.97 -51.93 -0.31 1.18 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -33.45 391.67 -8.57 -42.03 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -7.78 Total: 12.99 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.66 Total: -1.83 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.12 Total: -63.63 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.13 Total: -13.44 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.45 -8.57 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329828408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.761 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 33.40 seconds