Wall clock time and date at job start Wed Apr 1 2020 05:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35921 * 116.99804 * 2 1 4 4 C 1.38849 * 120.40704 * 0.02562 * 3 2 1 5 5 N 1.31881 * 120.99788 * 179.72035 * 4 3 2 6 6 C 1.31687 * 121.94201 * 0.28563 * 5 4 3 7 7 C 1.39524 * 120.69226 * 359.97438 * 6 5 4 8 8 C 1.47851 * 120.53128 * 180.02562 * 7 6 5 9 9 O 1.21555 * 120.00066 * 173.81944 * 8 7 6 10 10 N 1.34776 * 120.00402 * 353.81836 * 8 7 6 11 11 C 1.46499 * 120.00535 * 185.18266 * 10 8 7 12 12 C 1.52996 * 109.46970 * 298.09223 * 11 10 8 13 13 N 1.46505 * 109.47381 * 303.80426 * 12 11 10 14 14 C 1.36932 * 120.00125 * 185.19488 * 13 12 11 15 15 H 1.07995 * 120.00300 * 359.97438 * 14 13 12 16 16 C 1.38818 * 120.00045 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99570 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46879 * 60.00387 * 18 16 14 20 20 H 1.48499 * 109.47113 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47519 * 300.00111 * 18 16 14 22 22 C 1.52998 * 109.47202 * 178.09054 * 11 10 8 23 23 C 1.52996 * 109.47296 * 299.99970 * 22 11 10 24 24 C 1.52999 * 109.47417 * 300.00407 * 23 22 11 25 25 C 1.52998 * 109.47220 * 59.99547 * 24 23 22 26 26 C 1.52996 * 109.47042 * 300.00237 * 25 24 23 27 27 C 1.38852 * 120.40149 * 180.27859 * 3 2 1 28 28 C 1.50696 * 120.88390 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47154 * 59.99814 * 1 2 3 30 30 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47182 * 299.99722 * 1 2 3 32 32 H 1.07997 * 119.50057 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.65375 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99514 * 5.18490 * 10 8 7 35 35 H 1.09001 * 109.47495 * 63.80432 * 12 11 10 36 36 H 1.09004 * 109.47332 * 183.80616 * 12 11 10 37 37 H 0.97003 * 119.99515 * 5.19221 * 13 12 11 38 38 H 0.96998 * 119.99846 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46984 * 60.00061 * 22 11 10 40 40 H 1.09000 * 109.47190 * 179.97438 * 22 11 10 41 41 H 1.08999 * 109.47227 * 179.97438 * 23 22 11 42 42 H 1.09001 * 109.47100 * 60.00188 * 23 22 11 43 43 H 1.09000 * 109.46285 * 299.99916 * 24 23 22 44 44 H 1.08993 * 109.47314 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.46984 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.46893 * 60.00466 * 25 24 23 47 47 H 1.09000 * 109.47688 * 300.00381 * 26 25 24 48 48 H 1.09000 * 109.47114 * 179.97438 * 26 25 24 49 49 H 1.08997 * 109.47477 * 263.82900 * 28 27 3 50 50 H 1.09005 * 109.47126 * 23.82704 * 28 27 3 51 51 H 1.09000 * 109.47452 * 143.82608 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8846 3.5621 0.0061 6 6 3.1953 3.6891 0.0057 7 6 4.0199 2.5636 -0.0001 8 6 5.4911 2.7104 0.0002 9 8 6.1998 1.7287 0.1085 10 7 6.0465 3.9325 -0.1198 11 6 7.5007 4.0683 -0.2338 12 6 8.1647 3.5234 1.0323 13 7 7.6258 4.2182 2.2041 14 6 8.1483 3.9728 3.4458 15 1 8.9573 3.2669 3.5614 16 6 7.6380 4.6316 4.5561 17 7 6.6523 5.4924 4.4151 18 14 8.3503 4.2964 6.2501 19 1 9.7937 4.6453 6.2580 20 1 7.6370 5.1203 7.2589 21 1 8.1869 2.8579 6.5801 22 6 7.8632 5.5449 -0.4047 23 6 7.1992 6.0898 -1.6708 24 6 7.6914 5.3000 -2.8852 25 6 7.3290 3.8235 -2.7143 26 6 7.9930 3.2785 -1.4483 27 6 3.4321 1.2935 -0.0058 28 6 4.2810 0.0485 -0.0128 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2197 2.3226 0.0014 33 1 3.6366 4.6748 0.0099 34 1 5.4833 4.7222 -0.1305 35 1 7.9623 2.4557 1.1180 36 1 9.2411 3.6858 0.9768 37 1 6.8988 4.8520 2.1003 38 1 6.2955 5.9524 5.1909 39 1 7.5125 6.1075 0.4605 40 1 8.9452 5.6460 -0.4891 41 1 7.4571 7.1419 -1.7922 42 1 6.1173 5.9888 -1.5859 43 1 8.7734 5.4011 -2.9700 44 1 7.2188 5.6886 -3.7872 45 1 7.6800 3.2607 -3.5793 46 1 6.2470 3.7224 -2.6295 47 1 9.0750 3.3796 -1.5331 48 1 7.7344 2.2267 -1.3263 49 1 4.5814 -0.1923 1.0069 50 1 3.7071 -0.7803 -0.4277 51 1 5.1684 0.2171 -0.6228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329828408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:28 Heat of formation + Delta-G solvation = -52.836837 kcal Electronic energy + Delta-G solvation = -32454.690960 eV Core-core repulsion = 28353.553003 eV Total energy + Delta-G solvation = -4101.137957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.22828 -41.27611 -39.35591 -38.60231 -36.38061 -34.96806 -34.56197 -33.34650 -31.87702 -31.61227 -30.48706 -28.81444 -28.46064 -27.00580 -25.18204 -24.65867 -23.58384 -23.38703 -22.20996 -21.55317 -20.12220 -19.40328 -19.22314 -18.39426 -17.57390 -17.37261 -16.99700 -16.78725 -16.53405 -16.10094 -15.99976 -15.37084 -15.20190 -15.17519 -14.94554 -14.74059 -14.69133 -14.35966 -13.98039 -13.85731 -13.75991 -13.71789 -13.39709 -13.23502 -13.02219 -12.95232 -12.83655 -12.73094 -12.68638 -12.61010 -12.36149 -12.14184 -11.97380 -11.85433 -11.44013 -11.19517 -11.10217 -10.99332 -10.77029 -10.59367 -10.23072 -9.84579 -9.51774 -8.91021 -7.93607 -5.18985 -0.46189 0.09985 1.44085 1.46814 1.52678 1.86222 1.94764 2.37284 2.56113 2.72351 3.27926 3.39703 3.43586 3.64179 3.65851 3.72663 3.87369 3.90167 4.06128 4.12910 4.14762 4.27680 4.36488 4.40224 4.49089 4.53270 4.55055 4.62860 4.63876 4.67698 4.72024 4.76226 4.81529 4.88821 4.90681 5.04114 5.12976 5.18273 5.21373 5.22883 5.28254 5.34125 5.38284 5.44084 5.47350 5.51667 5.55518 5.74966 6.14488 6.28919 6.60375 6.72880 7.28009 7.36476 8.12616 8.40039 9.29190 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007896 B = 0.004295 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3545.228500 B = 6517.871468 C = 8682.872928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.067 3.933 4 C 0.042 3.958 5 N -0.468 5.468 6 C 0.099 3.901 7 C -0.161 4.161 8 C 0.566 3.434 9 O -0.546 6.546 10 N -0.694 5.694 11 C 0.186 3.814 12 C 0.141 3.859 13 N -0.729 5.729 14 C -0.243 4.243 15 H 0.064 0.936 16 C -0.069 4.069 17 N -0.963 5.963 18 Si 0.966 3.034 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.107 4.107 26 C -0.122 4.122 27 C -0.035 4.035 28 C -0.101 4.101 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.195 0.805 33 H 0.173 0.827 34 H 0.403 0.597 35 H 0.019 0.981 36 H 0.022 0.978 37 H 0.377 0.623 38 H 0.250 0.750 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.079 0.921 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 -4.822 -18.296 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.019 3.981 4 C -0.115 4.115 5 N -0.177 5.177 6 C -0.060 4.060 7 C -0.166 4.166 8 C 0.353 3.647 9 O -0.425 6.425 10 N -0.345 5.345 11 C 0.100 3.900 12 C 0.013 3.987 13 N -0.372 5.372 14 C -0.375 4.375 15 H 0.082 0.918 16 C -0.261 4.261 17 N -0.614 5.614 18 Si 0.796 3.204 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.161 4.161 27 C -0.044 4.044 28 C -0.157 4.157 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.212 0.788 33 H 0.190 0.810 34 H 0.240 0.760 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.210 0.790 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.098 0.902 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.426 -5.051 -18.120 21.508 hybrid contribution 0.254 -0.247 1.620 1.658 sum -10.173 -5.299 -16.501 20.095 Atomic orbital electron populations 1.23510 0.75601 1.06340 1.02827 1.86087 1.23974 1.24748 1.88314 1.19751 0.91787 0.87013 0.99503 1.23569 1.02102 0.86290 0.99571 1.67581 1.11700 1.26799 1.11648 1.23012 0.88883 0.98402 0.95684 1.20793 0.94549 0.94482 1.06800 1.17996 0.86919 0.83702 0.76080 1.90665 1.63370 1.38656 1.49838 1.45770 1.07873 1.07560 1.73330 1.20481 0.78858 0.96701 0.93912 1.21190 0.95348 0.95456 0.86682 1.42275 1.42218 1.50478 1.02215 1.19512 1.13036 1.18705 0.86235 0.91807 1.25392 0.99697 1.00038 1.00996 1.69771 1.29818 1.32046 1.29746 0.85324 0.77874 0.77013 0.80238 1.20336 1.21810 1.21301 1.21699 1.01915 0.92618 0.98847 1.21542 1.00206 0.99988 0.93405 1.21515 1.01560 0.94104 0.97766 1.21420 1.00039 0.96703 0.96322 1.21819 1.00791 0.99882 0.93563 1.20004 0.91949 0.95804 0.96645 1.20744 0.99125 0.93026 1.02842 0.90682 0.85739 0.91425 0.78815 0.80998 0.75962 0.96322 0.95998 0.79038 0.94110 0.92745 0.90389 0.90449 0.91736 0.91442 0.90474 0.91091 0.92848 0.90554 0.91970 0.91931 0.90209 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.23 16 2 O -0.32 -6.73 9.57 -92.66 -0.89 -7.62 16 3 C 0.07 1.70 6.68 22.56 0.15 1.85 16 4 C 0.04 0.96 10.21 84.83 0.87 1.83 16 5 N -0.47 -12.69 10.34 -194.40 -2.01 -14.70 16 6 C 0.10 2.80 10.70 85.02 0.91 3.71 16 7 C -0.16 -5.09 5.89 -20.01 -0.12 -5.21 16 8 C 0.57 19.84 7.13 86.79 0.62 20.46 16 9 O -0.55 -21.93 9.78 -3.89 -0.04 -21.97 16 10 N -0.69 -21.80 3.40 -425.76 -1.45 -23.25 16 11 C 0.19 6.01 0.32 3.60 0.00 6.01 16 12 C 0.14 6.10 4.92 86.38 0.42 6.53 16 13 N -0.73 -37.86 5.12 -343.44 -1.76 -39.62 16 14 C -0.24 -14.16 9.99 84.04 0.84 -13.33 16 15 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 16 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 17 N -0.96 -59.12 13.06 21.65 0.28 -58.83 16 18 Si 0.97 47.79 29.55 68.60 2.03 49.82 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 C -0.11 -3.22 4.64 30.59 0.14 -3.08 16 23 C -0.11 -2.36 5.75 30.59 0.18 -2.19 16 24 C -0.11 -2.04 5.92 30.59 0.18 -1.86 16 25 C -0.11 -2.31 5.77 30.59 0.18 -2.14 16 26 C -0.12 -3.39 4.49 30.59 0.14 -3.25 16 27 C -0.04 -1.06 5.97 -19.30 -0.12 -1.18 16 28 C -0.10 -3.03 8.69 71.23 0.62 -2.41 16 29 H 0.07 0.56 7.68 -2.39 -0.02 0.54 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.62 7.67 -2.39 -0.02 0.61 16 32 H 0.20 2.86 6.30 -2.91 -0.02 2.84 16 33 H 0.17 4.21 6.44 -2.91 -0.02 4.19 16 34 H 0.40 11.14 5.47 -92.70 -0.51 10.63 16 35 H 0.02 0.92 6.25 -2.39 -0.01 0.91 16 36 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.38 20.07 6.58 -92.71 -0.61 19.46 16 38 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.05 1.86 7.22 -2.39 -0.02 1.84 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 1.27 6.90 -2.39 -0.02 1.26 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.05 1.23 7.60 -2.39 -0.02 1.21 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.06 2.02 6.21 -2.39 -0.01 2.01 16 49 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.08 2.03 7.45 -2.38 -0.02 2.01 16 51 H 0.09 2.76 5.97 -2.39 -0.01 2.75 16 Total: -1.00 -73.74 391.67 2.61 -71.13 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -0.15 Total: 41.63 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.59 Total: 3.41 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -4.93 Total: -136.40 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.92 Total: -29.59 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -73.74 2.61 -71.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329828408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.290 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds