Wall clock time and date at job start Wed Apr 1 2020 07:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30837 * 125.90297 * 2 1 4 4 N 1.40076 * 108.21040 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.04136 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46962 * 89.97526 * 5 4 3 7 7 H 1.08007 * 119.99968 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00201 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99750 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00226 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47277 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47294 * 119.99702 * 10 8 6 13 13 H 1.48493 * 109.47091 * 239.99660 * 10 8 6 14 14 C 1.34951 * 107.92716 * 359.75882 * 4 3 2 15 15 C 1.50698 * 126.13050 * 180.23829 * 14 4 3 16 16 C 1.35320 * 107.74146 * 0.38732 * 14 4 3 17 17 C 1.50700 * 126.03854 * 179.87145 * 16 14 4 18 18 C 1.53000 * 109.47319 * 269.71585 * 17 16 14 19 19 C 1.50700 * 109.47319 * 179.97438 * 18 17 16 20 20 O 1.21280 * 119.99509 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00349 * 180.02562 * 19 18 17 22 22 C 1.47356 * 136.28175 * 359.96562 * 21 19 18 23 23 C 1.53749 * 88.33539 * 154.19734 * 22 21 19 24 24 C 1.45526 * 136.28828 * 180.02562 * 21 19 18 25 25 C 1.54110 * 116.24980 * 86.87499 * 24 21 19 26 26 C 1.54626 * 102.00826 * 264.16102 * 25 24 21 27 27 O 1.43341 * 107.72052 * 339.91402 * 26 25 24 28 28 C 1.43926 * 110.07814 * 358.43632 * 27 26 25 29 29 H 1.08999 * 109.46922 * 269.97466 * 1 2 3 30 30 H 1.09003 * 109.46965 * 29.97700 * 1 2 3 31 31 H 1.09002 * 109.47186 * 149.97660 * 1 2 3 32 32 H 1.08997 * 109.47485 * 209.97674 * 5 4 3 33 33 H 1.09006 * 109.46892 * 329.97879 * 5 4 3 34 34 H 0.97000 * 119.99691 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47157 * 270.17403 * 15 14 4 36 36 H 1.08994 * 109.46855 * 30.18278 * 15 14 4 37 37 H 1.09003 * 109.46705 * 150.17886 * 15 14 4 38 38 H 1.09003 * 109.47013 * 149.71977 * 17 16 14 39 39 H 1.08998 * 109.47206 * 29.72163 * 17 16 14 40 40 H 1.09003 * 109.46757 * 60.00236 * 18 17 16 41 41 H 1.08998 * 109.47454 * 300.00427 * 18 17 16 42 42 H 1.08999 * 113.41413 * 269.06941 * 22 21 19 43 43 H 1.09007 * 113.41026 * 39.32652 * 22 21 19 44 44 H 1.09006 * 114.30910 * 271.30745 * 23 22 21 45 45 H 1.09009 * 114.30827 * 138.32348 * 23 22 21 46 46 H 1.09009 * 110.90118 * 146.00692 * 25 24 21 47 47 H 1.09005 * 110.97876 * 22.35357 * 25 24 21 48 48 H 1.09002 * 109.82213 * 220.33772 * 26 25 24 49 49 H 1.08998 * 109.81782 * 99.48103 * 26 25 24 50 50 H 1.09000 * 110.33069 * 141.79596 * 28 27 26 51 51 H 1.08997 * 110.33310 * 264.03463 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7900 1.5007 -0.0013 6 6 5.1953 1.7986 1.4192 7 1 4.6298 1.3835 2.2405 8 6 6.2880 2.6010 1.6706 9 7 6.9768 3.1060 0.6706 10 14 6.7909 2.9696 3.4314 11 1 5.8601 2.2864 4.3654 12 1 8.1736 2.4807 3.6641 13 1 6.7383 4.4352 3.6647 14 6 3.6143 -0.7154 0.0045 15 6 4.8350 -1.5989 0.0108 16 6 2.3271 -1.1331 -0.0006 17 6 1.8599 -2.5658 -0.0004 18 6 1.7014 -3.0508 -1.4428 19 6 1.2347 -4.4837 -1.4426 20 8 1.0470 -5.0601 -0.3921 21 7 1.0260 -5.1247 -2.6096 22 6 1.1336 -4.7925 -4.0412 23 6 1.3509 -6.2877 -4.3259 24 6 0.5931 -6.4528 -3.0175 25 6 -0.9284 -6.6671 -3.1366 26 6 -1.2750 -7.2835 -1.7615 27 8 -0.0656 -7.8131 -1.2034 28 6 1.0269 -7.6221 -2.1207 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 5.6092 0.9979 -0.5151 33 1 4.5563 2.4330 -0.5156 34 1 7.7458 3.6702 0.8474 35 1 5.1338 -1.8133 -1.0153 36 1 5.6488 -1.0904 0.5276 37 1 4.6053 -2.5323 0.5248 38 1 0.9012 -2.6352 0.5137 39 1 2.5935 -3.1871 0.5134 40 1 2.6600 -2.9813 -1.9569 41 1 0.9678 -2.4295 -1.9565 42 1 0.2093 -4.4007 -4.4656 43 1 2.0006 -4.1759 -4.2788 44 1 2.3928 -6.6056 -4.2846 45 1 0.8196 -6.6595 -5.2021 46 1 -1.1613 -7.3614 -3.9440 47 1 -1.4461 -5.7186 -3.2795 48 1 -2.0047 -8.0833 -1.8883 49 1 -1.6800 -6.5148 -1.1035 50 1 1.9368 -7.3659 -1.5778 51 1 1.1815 -8.5206 -2.7180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418071788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:20:36 Heat of formation + Delta-G solvation = 17.161152 kcal Electronic energy + Delta-G solvation = -30881.045598 eV Core-core repulsion = 26782.942981 eV Total energy + Delta-G solvation = -4098.102617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58449 -40.58514 -38.69748 -37.48549 -34.38826 -33.35855 -32.48389 -31.51378 -30.52985 -29.72924 -28.95519 -28.82297 -26.68550 -25.88529 -24.05214 -23.46187 -22.87685 -22.37467 -21.27641 -18.80698 -18.64353 -18.53948 -17.24171 -16.95483 -16.70824 -16.24526 -15.86312 -15.53960 -15.41733 -14.93564 -14.48401 -14.29248 -14.18420 -13.73846 -13.67100 -13.43927 -13.04549 -12.96644 -12.90999 -12.57466 -12.53289 -12.52933 -12.26710 -12.12853 -11.97182 -11.84677 -11.76622 -11.61782 -11.56344 -11.36209 -11.22031 -10.93082 -10.89905 -10.82883 -10.72547 -10.26632 -9.85346 -9.73645 -9.69331 -9.58704 -8.97349 -8.66253 -8.18043 -7.47969 -6.27559 -4.34867 2.43646 2.60510 2.77667 3.19436 3.27469 3.33410 3.36674 3.45536 3.61890 3.90159 4.03303 4.29032 4.31636 4.41017 4.50203 4.69571 4.78711 4.83237 5.01647 5.05983 5.11774 5.19035 5.22815 5.25515 5.27803 5.33928 5.36205 5.39208 5.44539 5.56362 5.66163 5.68405 5.69624 5.83766 5.88331 5.95999 5.96302 6.01118 6.05250 6.23837 6.37465 6.48741 6.54182 6.74854 6.88358 7.01169 7.10813 7.50486 7.52216 7.65824 7.87473 8.05470 8.10801 8.66496 8.75309 9.31860 10.79990 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.002138 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.722751 B =13090.946673 C =13264.842490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.095 3.905 15 C -0.091 4.091 16 C -0.268 4.268 17 C -0.010 4.010 18 C -0.124 4.124 19 C 0.539 3.461 20 O -0.518 6.518 21 N -0.637 5.637 22 C 0.100 3.900 23 C -0.138 4.138 24 C 0.122 3.878 25 C -0.154 4.154 26 C 0.056 3.944 27 O -0.371 6.371 28 C 0.059 3.941 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.999 -20.533 -14.115 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.037 4.037 15 C -0.149 4.149 16 C -0.280 4.280 17 C -0.049 4.049 18 C -0.164 4.164 19 C 0.330 3.670 20 O -0.393 6.393 21 N -0.374 5.374 22 C -0.023 4.023 23 C -0.176 4.176 24 C 0.036 3.964 25 C -0.192 4.192 26 C -0.021 4.021 27 O -0.290 6.290 28 C -0.018 4.018 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.107 0.893 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.699 -19.261 -13.131 26.546 hybrid contribution 0.327 -0.217 0.622 0.736 sum -12.373 -19.478 -12.509 26.248 Atomic orbital electron populations 1.20012 0.88087 1.01975 1.02139 1.21943 0.96091 0.90772 1.02598 1.77259 0.87540 1.22657 1.24603 1.49252 1.05747 1.04195 1.51307 1.19655 0.77946 0.89574 0.98920 1.21360 1.12990 1.31632 0.91395 0.91741 1.24934 0.95735 0.95003 0.98148 1.69930 1.19032 1.33056 1.30962 0.86304 0.78412 0.78308 0.83716 1.19545 1.20623 1.20619 1.20765 0.96104 0.85660 1.01160 1.20400 0.94431 0.97833 1.02281 1.19342 0.91402 0.95009 1.22287 1.19404 1.01632 0.90920 0.92988 1.21688 1.02867 0.90533 1.01274 1.20773 0.76505 0.88519 0.81186 1.90767 1.50760 1.67951 1.29779 1.49577 1.68014 1.14014 1.05844 1.23014 1.02445 0.97048 0.79831 1.23168 1.01830 0.96473 0.96148 1.22474 0.94642 0.85672 0.93656 1.23199 0.94528 1.02691 0.98813 1.23086 0.88015 0.97734 0.93261 1.88521 1.16788 1.81216 1.42465 1.23318 0.91626 0.95536 0.91369 0.91373 0.91637 0.91556 0.93103 0.93067 0.92313 0.91317 0.89957 0.90680 0.91327 0.91338 0.89184 0.89238 0.89640 0.89726 0.88063 0.88739 0.88986 0.89472 0.91465 0.91391 0.89322 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.12 36.00 0.36 -0.55 16 2 C 0.05 0.97 7.22 -82.41 -0.59 0.37 16 3 N -0.30 -6.87 12.57 33.67 0.42 -6.45 16 4 N -0.33 -7.63 3.60 -58.31 -0.21 -7.84 16 5 C 0.26 6.60 5.82 -5.19 -0.03 6.57 16 6 C -0.54 -14.86 9.39 -34.44 -0.32 -15.18 16 7 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 10 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.09 1.89 6.93 -82.26 -0.57 1.32 16 15 C -0.09 -1.51 9.68 36.00 0.35 -1.16 16 16 C -0.27 -4.86 5.35 -105.05 -0.56 -5.42 16 17 C -0.01 -0.16 4.45 -27.88 -0.12 -0.28 16 18 C -0.12 -1.49 5.52 -27.88 -0.15 -1.64 16 19 C 0.54 6.86 8.02 -10.99 -0.09 6.77 16 20 O -0.52 -8.59 16.27 5.56 0.09 -8.50 16 21 N -0.64 -6.02 3.53 -176.37 -0.62 -6.65 16 22 C 0.10 0.56 8.24 -11.04 -0.09 0.46 16 23 C -0.14 -0.61 7.85 -26.80 -0.21 -0.82 16 24 C 0.12 0.94 1.19 -139.76 -0.17 0.77 16 25 C -0.15 -1.00 6.36 -25.30 -0.16 -1.16 16 26 C 0.06 0.52 7.81 38.01 0.30 0.82 16 27 O -0.37 -4.66 11.37 -35.23 -0.40 -5.06 16 28 C 0.06 0.57 6.80 37.48 0.25 0.82 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 32 H 0.05 1.29 7.67 -51.93 -0.40 0.89 16 33 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.51 7.74 -51.93 -0.40 1.10 16 37 H 0.07 1.09 7.14 -51.93 -0.37 0.72 16 38 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 39 H 0.07 1.06 7.09 -51.93 -0.37 0.69 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.21 8.13 -51.92 -0.42 -0.21 16 46 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 47 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 419.51 15.07 6.32 6.32 Total: -1.00 -34.67 419.51 -9.26 -43.93 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.67 Total: -1.00 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.91 Total: -6.63 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.33 Total: -45.35 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.31 Total: -13.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.67 -9.26 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418071788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.093 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds