Wall clock time and date at job start Wed Apr 1 2020 07:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30837 * 125.90297 * 2 1 4 4 N 1.40076 * 108.21040 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.04136 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46962 * 89.97526 * 5 4 3 7 7 H 1.08007 * 119.99968 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00201 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99750 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00226 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47277 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47294 * 119.99702 * 10 8 6 13 13 H 1.48493 * 109.47091 * 239.99660 * 10 8 6 14 14 C 1.34951 * 107.92716 * 359.75882 * 4 3 2 15 15 C 1.50698 * 126.13050 * 180.23829 * 14 4 3 16 16 C 1.35320 * 107.74146 * 0.38732 * 14 4 3 17 17 C 1.50700 * 126.03854 * 179.87145 * 16 14 4 18 18 C 1.53000 * 109.47319 * 269.71585 * 17 16 14 19 19 C 1.50700 * 109.47319 * 179.97438 * 18 17 16 20 20 O 1.21280 * 119.99509 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00349 * 180.02562 * 19 18 17 22 22 C 1.47356 * 136.28175 * 359.96562 * 21 19 18 23 23 C 1.53749 * 88.33539 * 154.19734 * 22 21 19 24 24 C 1.45526 * 136.28828 * 180.02562 * 21 19 18 25 25 C 1.54110 * 116.24980 * 86.87499 * 24 21 19 26 26 C 1.54626 * 102.00826 * 264.16102 * 25 24 21 27 27 O 1.43341 * 107.72052 * 339.91402 * 26 25 24 28 28 C 1.43926 * 110.07814 * 358.43632 * 27 26 25 29 29 H 1.08999 * 109.46922 * 269.97466 * 1 2 3 30 30 H 1.09003 * 109.46965 * 29.97700 * 1 2 3 31 31 H 1.09002 * 109.47186 * 149.97660 * 1 2 3 32 32 H 1.08997 * 109.47485 * 209.97674 * 5 4 3 33 33 H 1.09006 * 109.46892 * 329.97879 * 5 4 3 34 34 H 0.97000 * 119.99691 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47157 * 270.17403 * 15 14 4 36 36 H 1.08994 * 109.46855 * 30.18278 * 15 14 4 37 37 H 1.09003 * 109.46705 * 150.17886 * 15 14 4 38 38 H 1.09003 * 109.47013 * 149.71977 * 17 16 14 39 39 H 1.08998 * 109.47206 * 29.72163 * 17 16 14 40 40 H 1.09003 * 109.46757 * 60.00236 * 18 17 16 41 41 H 1.08998 * 109.47454 * 300.00427 * 18 17 16 42 42 H 1.08999 * 113.41413 * 269.06941 * 22 21 19 43 43 H 1.09007 * 113.41026 * 39.32652 * 22 21 19 44 44 H 1.09006 * 114.30910 * 271.30745 * 23 22 21 45 45 H 1.09009 * 114.30827 * 138.32348 * 23 22 21 46 46 H 1.09009 * 110.90118 * 146.00692 * 25 24 21 47 47 H 1.09005 * 110.97876 * 22.35357 * 25 24 21 48 48 H 1.09002 * 109.82213 * 220.33772 * 26 25 24 49 49 H 1.08998 * 109.81782 * 99.48103 * 26 25 24 50 50 H 1.09000 * 110.33069 * 141.79596 * 28 27 26 51 51 H 1.08997 * 110.33310 * 264.03463 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7900 1.5007 -0.0013 6 6 5.1953 1.7986 1.4192 7 1 4.6298 1.3835 2.2405 8 6 6.2880 2.6010 1.6706 9 7 6.9768 3.1060 0.6706 10 14 6.7909 2.9696 3.4314 11 1 5.8601 2.2864 4.3654 12 1 8.1736 2.4807 3.6641 13 1 6.7383 4.4352 3.6647 14 6 3.6143 -0.7154 0.0045 15 6 4.8350 -1.5989 0.0108 16 6 2.3271 -1.1331 -0.0006 17 6 1.8599 -2.5658 -0.0004 18 6 1.7014 -3.0508 -1.4428 19 6 1.2347 -4.4837 -1.4426 20 8 1.0470 -5.0601 -0.3921 21 7 1.0260 -5.1247 -2.6096 22 6 1.1336 -4.7925 -4.0412 23 6 1.3509 -6.2877 -4.3259 24 6 0.5931 -6.4528 -3.0175 25 6 -0.9284 -6.6671 -3.1366 26 6 -1.2750 -7.2835 -1.7615 27 8 -0.0656 -7.8131 -1.2034 28 6 1.0269 -7.6221 -2.1207 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 5.6092 0.9979 -0.5151 33 1 4.5563 2.4330 -0.5156 34 1 7.7458 3.6702 0.8474 35 1 5.1338 -1.8133 -1.0153 36 1 5.6488 -1.0904 0.5276 37 1 4.6053 -2.5323 0.5248 38 1 0.9012 -2.6352 0.5137 39 1 2.5935 -3.1871 0.5134 40 1 2.6600 -2.9813 -1.9569 41 1 0.9678 -2.4295 -1.9565 42 1 0.2093 -4.4007 -4.4656 43 1 2.0006 -4.1759 -4.2788 44 1 2.3928 -6.6056 -4.2846 45 1 0.8196 -6.6595 -5.2021 46 1 -1.1613 -7.3614 -3.9440 47 1 -1.4461 -5.7186 -3.2795 48 1 -2.0047 -8.0833 -1.8883 49 1 -1.6800 -6.5148 -1.1035 50 1 1.9368 -7.3659 -1.5778 51 1 1.1815 -8.5206 -2.7180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418071788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:20:34 Heat of formation + Delta-G solvation = -5.409854 kcal Electronic energy + Delta-G solvation = -30882.024350 eV Core-core repulsion = 26782.942981 eV Total energy + Delta-G solvation = -4099.081369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.28323 -42.09197 -39.63247 -38.22896 -36.11350 -34.86426 -34.20839 -32.38458 -31.60519 -30.76892 -30.37889 -29.44825 -28.02069 -27.64082 -25.44677 -24.04974 -23.93514 -23.49153 -22.15089 -20.33849 -20.16244 -19.26357 -18.83988 -18.09743 -17.66095 -17.28727 -16.91034 -16.59154 -16.39309 -16.25679 -15.85860 -15.74738 -14.96482 -14.81275 -14.68910 -14.52055 -14.33675 -14.16375 -14.06323 -13.93721 -13.65058 -13.49300 -13.32578 -13.26153 -13.20794 -12.98801 -12.88864 -12.76541 -12.64750 -12.60826 -12.55338 -12.36940 -12.25692 -12.05530 -11.92851 -11.71432 -11.45278 -11.18720 -10.77115 -10.73102 -10.49935 -9.85875 -9.68025 -9.05894 -8.37008 -6.54573 1.14561 1.32934 1.35000 1.47474 1.62551 1.76109 1.91825 2.00739 2.31415 2.83028 2.92351 3.40796 3.47013 3.60238 3.83321 3.84043 3.91481 3.94252 4.12706 4.18794 4.20628 4.22724 4.29293 4.43018 4.47529 4.57336 4.63665 4.67781 4.68466 4.71954 4.73160 4.77765 4.80224 4.81941 4.83075 4.84624 4.92382 4.97124 4.99483 5.01416 5.11216 5.19071 5.27030 5.29279 5.40252 5.48160 5.53693 5.78418 6.01996 6.05285 6.29485 6.60577 6.77451 7.08691 7.16910 7.21755 8.69230 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.002138 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.722751 B =13090.946673 C =13264.842490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 N -0.348 5.348 4 N -0.355 5.355 5 C 0.276 3.724 6 C -0.553 4.553 7 H 0.045 0.955 8 C 0.023 3.977 9 N -0.917 5.917 10 Si 0.970 3.030 11 H -0.276 1.276 12 H -0.265 1.265 13 H -0.273 1.273 14 C 0.080 3.920 15 C -0.086 4.086 16 C -0.258 4.258 17 C -0.002 4.002 18 C -0.113 4.113 19 C 0.537 3.463 20 O -0.570 6.570 21 N -0.643 5.643 22 C 0.095 3.905 23 C -0.117 4.117 24 C 0.112 3.888 25 C -0.141 4.141 26 C 0.046 3.954 27 O -0.410 6.410 28 C 0.052 3.948 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.020 0.980 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.042 0.958 50 H 0.060 0.940 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 -22.214 -16.178 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.172 5.172 4 N -0.135 5.135 5 C 0.157 3.843 6 C -0.591 4.591 7 H 0.063 0.937 8 C -0.178 4.178 9 N -0.555 5.555 10 Si 0.794 3.206 11 H -0.201 1.201 12 H -0.190 1.190 13 H -0.198 1.198 14 C -0.050 4.050 15 C -0.144 4.144 16 C -0.270 4.270 17 C -0.041 4.041 18 C -0.152 4.152 19 C 0.328 3.672 20 O -0.449 6.449 21 N -0.379 5.379 22 C -0.026 4.026 23 C -0.155 4.155 24 C 0.026 3.974 25 C -0.179 4.179 26 C -0.030 4.030 27 O -0.330 6.330 28 C -0.025 4.025 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.111 0.889 48 H 0.104 0.896 49 H 0.060 0.940 50 H 0.078 0.922 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.670 -20.962 -15.263 29.312 hybrid contribution 0.536 0.205 1.223 1.351 sum -13.133 -20.757 -14.040 28.293 Atomic orbital electron populations 1.20189 0.84751 1.03788 1.03277 1.22766 0.98101 0.90162 1.00039 1.77194 0.87834 1.24914 1.27221 1.49018 1.05334 1.05102 1.54063 1.19135 0.78946 0.88785 0.97484 1.21456 1.13450 1.32400 0.91840 0.93671 1.25732 0.95430 0.94446 1.02237 1.70003 1.19387 1.33259 1.32868 0.85322 0.78419 0.78272 0.78560 1.20081 1.18991 1.19815 1.21428 0.98111 0.84719 1.00694 1.20471 0.92415 0.97675 1.03887 1.19678 0.90505 0.96311 1.20502 1.19331 1.01057 0.88564 0.95161 1.21520 1.03865 0.90663 0.99187 1.20732 0.76316 0.88557 0.81574 1.90747 1.53291 1.68991 1.31852 1.49685 1.66547 1.15061 1.06587 1.23351 1.03931 0.98321 0.77020 1.23190 1.01953 0.95177 0.95177 1.22822 0.95925 0.83903 0.94725 1.23213 0.93293 1.03533 0.97888 1.23233 0.87415 0.97902 0.94456 1.88470 1.18366 1.81580 1.44555 1.23458 0.89983 0.97746 0.91299 0.90454 0.90878 0.88682 0.93450 0.96141 0.91685 0.88787 0.92169 0.88581 0.91517 0.92077 0.88200 0.87786 0.87540 0.88942 0.87757 0.85278 0.85529 0.88920 0.89628 0.93993 0.92207 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.12 71.24 0.72 -0.96 16 2 C 0.05 2.07 7.22 43.10 0.31 2.38 16 3 N -0.35 -16.56 12.57 -47.38 -0.60 -17.15 16 4 N -0.36 -17.27 3.60 -338.39 -1.22 -18.49 16 5 C 0.28 14.89 5.82 85.63 0.50 15.39 16 6 C -0.55 -31.88 9.39 25.60 0.24 -31.64 16 7 H 0.04 2.72 7.81 -2.91 -0.02 2.69 16 8 C 0.02 1.26 5.46 84.66 0.46 1.72 16 9 N -0.92 -52.52 13.29 21.45 0.28 -52.24 16 10 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 C 0.08 3.25 6.93 41.40 0.29 3.53 16 15 C -0.09 -2.86 9.68 71.24 0.69 -2.17 16 16 C -0.26 -9.25 5.35 -20.14 -0.11 -9.36 16 17 C 0.00 -0.06 4.45 29.85 0.13 0.07 16 18 C -0.11 -2.52 5.52 29.85 0.16 -2.35 16 19 C 0.54 13.16 8.02 87.66 0.70 13.86 16 20 O -0.57 -19.24 16.27 -3.03 -0.05 -19.29 16 21 N -0.64 -10.80 3.53 -830.31 -2.93 -13.73 16 22 C 0.10 0.69 8.24 81.38 0.67 1.36 16 23 C -0.12 -0.52 7.85 30.55 0.24 -0.28 16 24 C 0.11 1.43 1.19 -1.02 0.00 1.43 16 25 C -0.14 -1.39 6.36 31.52 0.20 -1.19 16 26 C 0.05 0.82 7.81 72.54 0.57 1.39 16 27 O -0.41 -10.36 11.37 -148.98 -1.69 -12.05 16 28 C 0.05 0.95 6.80 72.19 0.49 1.44 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 2.04 7.92 -2.39 -0.02 2.02 16 32 H 0.05 2.53 7.67 -2.39 -0.02 2.51 16 33 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.06 2.26 7.74 -2.39 -0.02 2.24 16 37 H 0.10 2.73 7.14 -2.39 -0.02 2.71 16 38 H 0.07 1.97 7.88 -2.39 -0.02 1.95 16 39 H 0.06 1.87 7.09 -2.39 -0.02 1.85 16 40 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 45 H 0.13 -0.22 8.13 -2.38 -0.02 -0.24 16 46 H 0.13 0.41 8.14 -2.38 -0.02 0.39 16 47 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -80.78 419.51 3.01 -77.77 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.91 Total: 14.41 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 6.27 Total: -5.38 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -4.45 Total: -101.61 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.74 Total: -31.34 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -80.78 3.01 -77.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418071788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.360 kcal (2) G-P(sol) polarization free energy of solvation -80.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds