Wall clock time and date at job start Wed Apr 1 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40198 * 120.36802 * 2 1 4 4 C 1.35354 * 119.94862 * 179.76862 * 3 2 1 5 5 N 1.35759 * 120.70220 * 0.51315 * 4 3 2 6 6 C 1.46499 * 119.62445 * 179.75806 * 5 4 3 7 7 C 1.50700 * 109.47257 * 269.72600 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27849 * 7 6 5 10 10 C 1.46921 * 120.63392 * 359.43977 * 9 7 6 11 11 C 1.53624 * 108.54016 * 126.36873 * 10 9 7 12 12 C 1.53041 * 109.23819 * 54.86424 * 11 10 9 13 13 C 1.53037 * 109.53606 * 298.50541 * 12 11 10 14 14 H 1.09008 * 109.50055 * 301.41274 * 13 12 11 15 15 C 1.52998 * 109.49828 * 181.32143 * 13 12 11 16 16 H 1.09006 * 109.47342 * 300.16030 * 15 13 12 17 17 C 1.53003 * 109.47202 * 60.16155 * 15 13 12 18 18 N 1.46501 * 109.47375 * 180.16326 * 15 13 12 19 19 C 1.36936 * 120.00049 * 154.99998 * 18 15 13 20 20 H 1.07996 * 120.00555 * 359.97438 * 19 18 15 21 21 C 1.38814 * 119.99865 * 180.02562 * 19 18 15 22 22 N 1.31626 * 120.00161 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47104 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47165 * 120.00201 * 23 21 19 26 26 H 1.48504 * 109.46987 * 240.00257 * 23 21 19 27 27 C 1.46924 * 120.62813 * 179.72946 * 9 7 6 28 28 C 1.34665 * 120.74767 * 359.48432 * 5 4 3 29 29 O 1.22064 * 119.98225 * 180.27676 * 28 5 4 30 30 C 1.36394 * 120.36820 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47083 * 269.97457 * 1 2 3 32 32 H 1.09006 * 109.47065 * 29.97814 * 1 2 3 33 33 H 1.08999 * 109.47362 * 149.97915 * 1 2 3 34 34 H 1.08001 * 120.02653 * 0.04183 * 3 2 1 35 35 H 1.08001 * 119.64484 * 180.27126 * 4 3 2 36 36 H 1.09009 * 109.46700 * 149.72494 * 6 5 4 37 37 H 1.08998 * 109.46827 * 29.73069 * 6 5 4 38 38 H 1.09000 * 109.59076 * 246.20663 * 10 9 7 39 39 H 1.09000 * 109.58577 * 6.63206 * 10 9 7 40 40 H 1.08990 * 109.63928 * 294.86618 * 11 10 9 41 41 H 1.09008 * 109.43003 * 174.72634 * 11 10 9 42 42 H 1.09003 * 109.46117 * 178.48816 * 12 11 10 43 43 H 1.08996 * 109.45315 * 58.52100 * 12 11 10 44 44 H 1.09003 * 109.46860 * 299.99897 * 17 15 13 45 45 H 1.08995 * 109.46982 * 60.00462 * 17 15 13 46 46 H 1.08998 * 109.47071 * 180.02562 * 17 15 13 47 47 H 0.97001 * 119.99945 * 334.99351 * 18 15 13 48 48 H 0.96993 * 120.00155 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.58932 * 353.36359 * 27 9 7 50 50 H 1.08998 * 109.59450 * 113.65039 * 27 9 7 51 51 H 1.07997 * 120.35154 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0274 -0.0009 6 6 5.7187 0.0443 -0.0010 7 6 6.2210 0.0501 -1.4218 8 8 5.4329 0.0405 -2.3436 9 7 7.5461 0.0596 -1.6681 10 6 8.5129 0.0769 -0.5620 11 6 9.4949 -1.0889 -0.7533 12 6 10.1285 -0.9917 -2.1430 13 6 9.0381 -1.1006 -3.2113 14 1 8.5096 -2.0470 -3.0967 15 6 9.6761 -1.0363 -4.6005 16 1 10.2055 -0.0903 -4.7138 17 6 10.6618 -2.1951 -4.7631 18 7 8.6315 -1.1367 -5.6227 19 6 8.8409 -0.6109 -6.8696 20 1 9.7760 -0.1218 -7.0994 21 6 7.8509 -0.7055 -7.8380 22 7 6.7106 -1.3002 -7.5576 23 14 8.1363 0.0124 -9.5388 24 1 9.4882 0.6241 -9.5974 25 1 8.0359 -1.0662 -10.5546 26 1 7.1114 1.0506 -9.8162 27 6 8.0510 0.0594 -3.0478 28 6 3.6016 -1.1508 -0.0010 29 8 4.2312 -2.1965 -0.0010 30 6 2.1965 -1.1768 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6822 2.1486 0.0007 35 1 4.1102 2.1344 0.0092 36 1 6.0923 -0.8416 0.5129 37 1 6.0718 0.9383 0.5129 38 1 9.0572 1.0213 -0.5670 39 1 7.9865 -0.0387 0.3854 40 1 8.9622 -2.0354 -0.6617 41 1 10.2746 -1.0348 0.0066 42 1 10.8460 -1.8020 -2.2725 43 1 10.6401 -0.0344 -2.2425 44 1 11.4391 -2.1204 -4.0026 45 1 10.1324 -3.1411 -4.6499 46 1 11.1166 -2.1491 -5.7526 47 1 7.7915 -1.5757 -5.4163 48 1 6.0190 -1.3667 -8.2344 49 1 7.2197 -0.0678 -3.7412 50 1 8.5562 1.0034 -3.2523 51 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482477336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:20 Heat of formation + Delta-G solvation = -26.093771 kcal Electronic energy + Delta-G solvation = -31395.843651 eV Core-core repulsion = 27295.865360 eV Total energy + Delta-G solvation = -4099.978291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.60182 -39.94332 -37.79856 -37.07650 -35.46549 -35.34806 -33.00093 -31.75312 -30.88445 -29.96877 -29.41844 -28.27822 -27.05099 -25.21800 -23.83439 -23.79418 -23.00068 -21.82079 -21.08790 -19.59455 -19.15990 -17.72499 -17.64809 -17.40396 -16.93545 -16.13561 -15.73046 -15.33857 -15.15980 -14.82674 -14.45001 -14.36861 -14.20842 -14.10664 -13.71940 -13.63494 -13.33380 -13.24317 -13.01584 -12.83753 -12.74673 -12.47568 -12.34980 -12.15599 -12.01377 -11.88174 -11.77072 -11.33806 -11.11508 -10.99525 -10.84123 -10.69271 -10.60537 -10.26553 -10.21445 -10.11537 -10.00028 -9.80479 -9.55494 -9.46710 -8.86446 -8.49616 -8.05662 -6.88388 -5.67588 -2.97376 0.71125 1.79810 2.34304 2.59898 3.06617 3.47630 3.52241 3.55348 3.59330 4.31159 4.33308 4.41679 4.55590 4.61757 4.68240 4.81664 4.86931 4.88945 4.99926 5.07038 5.16762 5.23568 5.30442 5.31763 5.36660 5.42178 5.61331 5.63307 5.68794 5.78724 5.79915 5.82026 5.92529 5.93966 6.02403 6.13282 6.21491 6.23618 6.24303 6.39289 6.44766 6.50084 6.51991 6.71984 6.75404 6.94813 6.96296 7.13666 7.44286 7.76662 7.99350 8.20046 8.49447 9.60490 10.18737 10.52928 11.54489 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.003069 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.356054 B = 9121.436215 C =11117.901818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.230 4.230 4 C 0.144 3.856 5 N -0.482 5.482 6 C 0.072 3.928 7 C 0.497 3.503 8 O -0.514 6.514 9 N -0.608 5.608 10 C 0.105 3.895 11 C -0.135 4.135 12 C -0.114 4.114 13 C -0.104 4.104 14 H 0.070 0.930 15 C 0.181 3.819 16 H 0.046 0.954 17 C -0.165 4.165 18 N -0.725 5.725 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.928 5.928 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.124 3.876 28 C 0.522 3.478 29 O -0.550 6.550 30 C -0.246 4.246 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 7.395 24.184 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.253 4.253 4 C 0.018 3.982 5 N -0.193 5.193 6 C -0.053 4.053 7 C 0.282 3.718 8 O -0.389 6.389 9 N -0.342 5.342 10 C -0.018 4.018 11 C -0.173 4.173 12 C -0.152 4.152 13 C -0.124 4.124 14 H 0.089 0.911 15 C 0.070 3.930 16 H 0.064 0.936 17 C -0.225 4.225 18 N -0.366 5.366 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.576 5.576 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.003 3.997 28 C 0.325 3.675 29 O -0.432 6.432 30 C -0.268 4.268 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.125 0.875 50 H 0.084 0.916 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.185 6.797 23.511 24.680 hybrid contribution -0.032 0.249 -1.030 1.060 sum -3.217 7.046 22.481 23.778 Atomic orbital electron populations 1.20920 0.90398 1.03682 1.02881 1.20189 0.96754 0.92671 0.89366 1.20502 0.92328 0.98899 1.13554 1.21859 0.93632 0.89440 0.93306 1.45059 1.07173 1.07324 1.59699 1.21851 0.79755 1.06728 0.96994 1.20583 0.82803 0.77517 0.90903 1.90830 1.54489 1.48135 1.45435 1.48168 1.04628 1.73028 1.08369 1.21871 0.91385 0.99440 0.89152 1.22001 0.98465 0.98583 0.98263 1.21623 0.97948 1.02348 0.93319 1.21767 0.95814 0.98780 0.96005 0.91135 1.20168 0.90132 0.96108 0.86579 0.93556 1.22482 0.99137 1.00380 1.00480 1.42476 1.15653 1.69193 1.09288 1.19226 0.99739 1.29533 0.88463 0.91257 1.24752 0.96385 1.01496 0.98281 1.69687 1.05933 1.48300 1.33662 0.86173 0.77116 0.78293 0.84928 1.20649 1.21971 1.21961 1.21720 0.99150 0.98051 0.80794 1.17089 0.89374 0.82422 0.78651 1.90962 1.69113 1.30244 1.52861 1.21917 0.92245 0.99589 1.13006 0.90234 0.90751 0.90774 0.83770 0.82282 0.85453 0.86443 0.90976 0.90494 0.91340 0.90878 0.91113 0.91845 0.94294 0.93592 0.92882 0.78171 0.93582 0.87544 0.91642 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.03 36.00 0.36 -0.47 16 2 C 0.01 0.14 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -2.03 9.71 -39.87 -0.39 -2.42 16 4 C 0.14 1.36 10.28 -16.84 -0.17 1.19 16 5 N -0.48 -6.08 2.07 -121.06 -0.25 -6.33 16 6 C 0.07 0.79 4.16 -5.19 -0.02 0.77 16 7 C 0.50 7.78 7.76 -10.98 -0.09 7.69 16 8 O -0.51 -10.92 15.84 5.55 0.09 -10.83 16 9 N -0.61 -8.53 2.97 -172.51 -0.51 -9.04 16 10 C 0.10 0.97 6.37 -3.49 -0.02 0.95 16 11 C -0.13 -1.32 6.10 -26.39 -0.16 -1.48 16 12 C -0.11 -1.39 4.85 -26.69 -0.13 -1.52 16 13 C -0.10 -1.71 1.97 -90.50 -0.18 -1.89 16 14 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 15 C 0.18 3.55 2.47 -67.93 -0.17 3.39 16 16 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 17 C -0.16 -2.99 9.15 37.16 0.34 -2.65 16 18 N -0.72 -18.46 4.52 -53.42 -0.24 -18.70 16 19 C -0.24 -6.71 9.93 -15.06 -0.15 -6.85 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -29.25 13.06 55.49 0.72 -28.52 16 23 Si 0.90 22.99 29.55 -169.99 -5.02 17.97 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 27 C 0.12 2.16 5.47 -3.71 -0.02 2.13 16 28 C 0.52 8.22 7.40 -15.44 -0.11 8.11 16 29 O -0.55 -10.69 16.64 4.86 0.08 -10.61 16 30 C -0.25 -3.21 9.65 -39.38 -0.38 -3.59 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.16 0.92 8.03 -52.49 -0.42 0.50 16 36 H 0.13 1.38 6.95 -51.92 -0.36 1.02 16 37 H 0.12 0.70 7.80 -51.93 -0.41 0.30 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.57 6.41 -51.93 -0.33 0.24 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.38 10.79 7.61 -40.82 -0.31 10.48 16 48 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 49 H 0.11 2.40 6.51 -51.93 -0.34 2.06 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 408.08 15.07 6.15 6.15 Total: -1.00 -38.88 408.08 -9.25 -48.13 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -8.26 Total: 9.39 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.00 Total: 2.40 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.28 Total: -62.59 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.17 Total: -21.44 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.88 -9.25 -48.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482477336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.032 kcal (2) G-P(sol) polarization free energy of solvation -38.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds