Wall clock time and date at job start Wed Apr 1 2020 05:28:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.40198 * 120.36802 * 2 1
4 4 C 1.35354 * 119.94862 * 179.76862 * 3 2 1
5 5 N 1.35759 * 120.70220 * 0.51315 * 4 3 2
6 6 C 1.46499 * 119.62445 * 179.75806 * 5 4 3
7 7 C 1.50700 * 109.47257 * 269.72600 * 6 5 4
8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5
9 9 N 1.34777 * 119.99675 * 180.27849 * 7 6 5
10 10 C 1.46921 * 120.63392 * 359.43977 * 9 7 6
11 11 C 1.53624 * 108.54016 * 126.36873 * 10 9 7
12 12 C 1.53041 * 109.23819 * 54.86424 * 11 10 9
13 13 C 1.53037 * 109.53606 * 298.50541 * 12 11 10
14 14 H 1.09008 * 109.50055 * 301.41274 * 13 12 11
15 15 C 1.52998 * 109.49828 * 181.32143 * 13 12 11
16 16 H 1.09006 * 109.47342 * 300.16030 * 15 13 12
17 17 C 1.53003 * 109.47202 * 60.16155 * 15 13 12
18 18 N 1.46501 * 109.47375 * 180.16326 * 15 13 12
19 19 C 1.36936 * 120.00049 * 154.99998 * 18 15 13
20 20 H 1.07996 * 120.00555 * 359.97438 * 19 18 15
21 21 C 1.38814 * 119.99865 * 180.02562 * 19 18 15
22 22 N 1.31626 * 120.00161 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 120.00083 * 179.97438 * 21 19 18
24 24 H 1.48501 * 109.47104 * 359.97438 * 23 21 19
25 25 H 1.48500 * 109.47165 * 120.00201 * 23 21 19
26 26 H 1.48504 * 109.46987 * 240.00257 * 23 21 19
27 27 C 1.46924 * 120.62813 * 179.72946 * 9 7 6
28 28 C 1.34665 * 120.74767 * 359.48432 * 5 4 3
29 29 O 1.22064 * 119.98225 * 180.27676 * 28 5 4
30 30 C 1.36394 * 120.36820 * 180.02562 * 2 1 3
31 31 H 1.09004 * 109.47083 * 269.97457 * 1 2 3
32 32 H 1.09006 * 109.47065 * 29.97814 * 1 2 3
33 33 H 1.08999 * 109.47362 * 149.97915 * 1 2 3
34 34 H 1.08001 * 120.02653 * 0.04183 * 3 2 1
35 35 H 1.08001 * 119.64484 * 180.27126 * 4 3 2
36 36 H 1.09009 * 109.46700 * 149.72494 * 6 5 4
37 37 H 1.08998 * 109.46827 * 29.73069 * 6 5 4
38 38 H 1.09000 * 109.59076 * 246.20663 * 10 9 7
39 39 H 1.09000 * 109.58577 * 6.63206 * 10 9 7
40 40 H 1.08990 * 109.63928 * 294.86618 * 11 10 9
41 41 H 1.09008 * 109.43003 * 174.72634 * 11 10 9
42 42 H 1.09003 * 109.46117 * 178.48816 * 12 11 10
43 43 H 1.08996 * 109.45315 * 58.52100 * 12 11 10
44 44 H 1.09003 * 109.46860 * 299.99897 * 17 15 13
45 45 H 1.08995 * 109.46982 * 60.00462 * 17 15 13
46 46 H 1.08998 * 109.47071 * 180.02562 * 17 15 13
47 47 H 0.97001 * 119.99945 * 334.99351 * 18 15 13
48 48 H 0.96993 * 120.00155 * 180.02562 * 22 21 19
49 49 H 1.09006 * 109.58932 * 353.36359 * 27 9 7
50 50 H 1.08998 * 109.59450 * 113.65039 * 27 9 7
51 51 H 1.07997 * 120.35154 * 359.97438 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2157 1.2096 0.0000
4 6 3.5692 1.1997 0.0047
5 7 4.2538 0.0274 -0.0009
6 6 5.7187 0.0443 -0.0010
7 6 6.2210 0.0501 -1.4218
8 8 5.4329 0.0405 -2.3436
9 7 7.5461 0.0596 -1.6681
10 6 8.5129 0.0769 -0.5620
11 6 9.4949 -1.0889 -0.7533
12 6 10.1285 -0.9917 -2.1430
13 6 9.0381 -1.1006 -3.2113
14 1 8.5096 -2.0470 -3.0967
15 6 9.6761 -1.0363 -4.6005
16 1 10.2055 -0.0903 -4.7138
17 6 10.6618 -2.1951 -4.7631
18 7 8.6315 -1.1367 -5.6227
19 6 8.8409 -0.6109 -6.8696
20 1 9.7760 -0.1218 -7.0994
21 6 7.8509 -0.7055 -7.8380
22 7 6.7106 -1.3002 -7.5576
23 14 8.1363 0.0124 -9.5388
24 1 9.4882 0.6241 -9.5974
25 1 8.0359 -1.0662 -10.5546
26 1 7.1114 1.0506 -9.8162
27 6 8.0510 0.0594 -3.0478
28 6 3.6016 -1.1508 -0.0010
29 8 4.2312 -2.1965 -0.0010
30 6 2.1965 -1.1768 -0.0005
31 1 -0.3633 -0.0005 1.0277
32 1 -0.3633 0.8902 -0.5135
33 1 -0.3634 -0.8898 -0.5141
34 1 1.6822 2.1486 0.0007
35 1 4.1102 2.1344 0.0092
36 1 6.0923 -0.8416 0.5129
37 1 6.0718 0.9383 0.5129
38 1 9.0572 1.0213 -0.5670
39 1 7.9865 -0.0387 0.3854
40 1 8.9622 -2.0354 -0.6617
41 1 10.2746 -1.0348 0.0066
42 1 10.8460 -1.8020 -2.2725
43 1 10.6401 -0.0344 -2.2425
44 1 11.4391 -2.1204 -4.0026
45 1 10.1324 -3.1411 -4.6499
46 1 11.1166 -2.1491 -5.7526
47 1 7.7915 -1.5757 -5.4163
48 1 6.0190 -1.3667 -8.2344
49 1 7.2197 -0.0678 -3.7412
50 1 8.5562 1.0034 -3.2523
51 1 1.6683 -2.1188 -0.0005
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001482477336.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:28:19
Heat of formation + Delta-G solvation = -53.273366 kcal
Electronic energy + Delta-G solvation = -31397.022246 eV
Core-core repulsion = 27295.865360 eV
Total energy + Delta-G solvation = -4101.156886 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-42.57967 -41.10427 -39.13229 -38.12619 -37.00370 -36.26651 -34.70885 -33.16912
-31.92070 -31.19116 -30.54341 -29.79770 -27.98902 -26.51935 -25.52816 -24.68127
-24.31796 -22.78167 -22.26373 -21.11762 -20.26090 -19.19121 -18.71035 -18.55234
-18.29602 -17.07201 -16.90359 -16.73999 -16.51090 -16.22073 -15.64428 -15.59191
-15.35468 -15.19747 -15.04538 -14.86830 -14.37749 -14.27370 -14.16277 -14.03160
-13.92546 -13.58691 -13.43713 -13.35782 -13.06536 -13.02579 -12.87748 -12.82527
-12.57651 -12.48960 -12.38824 -12.12306 -12.01124 -11.85500 -11.70869 -11.44603
-11.25964 -11.13353 -11.12085 -10.97818 -10.54380 -9.68375 -9.02235 -9.00461
-7.93570 -5.23153 -0.14276 0.89758 1.39324 1.42674 1.44829 1.46821
1.54634 2.01121 2.54545 2.64348 3.35733 3.39757 3.60514 3.69471
3.72126 3.83049 3.84514 3.92431 4.02598 4.10160 4.11091 4.17376
4.28453 4.32288 4.37129 4.41585 4.58330 4.61827 4.75059 4.77392
4.81601 4.83273 4.87200 4.90198 4.92268 5.01273 5.02632 5.08559
5.15539 5.22310 5.26142 5.37179 5.46478 5.47255 5.49215 5.54067
5.61412 5.64799 6.02957 6.26652 6.32436 6.93558 7.04491 7.31175
8.08850 8.31217 9.30338
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009943 B = 0.003069 C = 0.002518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2815.356054 B = 9121.436215 C =11117.901818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.033 3.967
3 C -0.232 4.232
4 C 0.139 3.861
5 N -0.485 5.485
6 C 0.079 3.921
7 C 0.487 3.513
8 O -0.586 6.586
9 N -0.603 5.603
10 C 0.096 3.904
11 C -0.132 4.132
12 C -0.108 4.108
13 C -0.092 4.092
14 H 0.037 0.963
15 C 0.172 3.828
16 H 0.053 0.947
17 C -0.154 4.154
18 N -0.739 5.739
19 C -0.230 4.230
20 H 0.081 0.919
21 C -0.085 4.085
22 N -0.975 5.975
23 Si 0.973 3.027
24 H -0.259 1.259
25 H -0.296 1.296
26 H -0.297 1.297
27 C 0.132 3.868
28 C 0.501 3.499
29 O -0.613 6.613
30 C -0.295 4.295
31 H 0.102 0.898
32 H 0.093 0.907
33 H 0.069 0.931
34 H 0.185 0.815
35 H 0.205 0.795
36 H 0.129 0.871
37 H 0.182 0.818
38 H 0.103 0.897
39 H 0.113 0.887
40 H 0.048 0.952
41 H 0.115 0.885
42 H 0.078 0.922
43 H 0.084 0.916
44 H 0.083 0.917
45 H 0.030 0.970
46 H 0.035 0.965
47 H 0.365 0.635
48 H 0.247 0.753
49 H 0.042 0.958
50 H 0.074 0.926
51 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.253 10.806 27.054 29.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.029 3.971
3 C -0.254 4.254
4 C 0.013 3.987
5 N -0.194 5.194
6 C -0.046 4.046
7 C 0.274 3.726
8 O -0.466 6.466
9 N -0.335 5.335
10 C -0.025 4.025
11 C -0.170 4.170
12 C -0.146 4.146
13 C -0.112 4.112
14 H 0.056 0.944
15 C 0.064 3.936
16 H 0.071 0.929
17 C -0.214 4.214
18 N -0.378 5.378
19 C -0.362 4.362
20 H 0.099 0.901
21 C -0.276 4.276
22 N -0.627 5.627
23 Si 0.802 3.198
24 H -0.183 1.183
25 H -0.224 1.224
26 H -0.225 1.225
27 C 0.009 3.991
28 C 0.306 3.694
29 O -0.501 6.501
30 C -0.317 4.317
31 H 0.121 0.879
32 H 0.112 0.888
33 H 0.088 0.912
34 H 0.202 0.798
35 H 0.222 0.778
36 H 0.147 0.853
37 H 0.199 0.801
38 H 0.121 0.879
39 H 0.131 0.869
40 H 0.067 0.933
41 H 0.133 0.867
42 H 0.097 0.903
43 H 0.102 0.898
44 H 0.101 0.899
45 H 0.049 0.951
46 H 0.054 0.946
47 H 0.195 0.805
48 H 0.056 0.944
49 H 0.061 0.939
50 H 0.092 0.908
51 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -1.110 10.262 26.451 28.394
hybrid contribution -0.635 -0.718 -1.854 2.087
sum -1.744 9.544 24.597 26.441
Atomic orbital electron populations
1.21040 0.87901 1.04428 1.04499 1.20663 0.98618 0.92101 0.85762
1.21083 0.92499 0.99799 1.11970 1.22732 0.94487 0.89700 0.91777
1.45114 1.08061 1.07486 1.58695 1.22086 0.78987 1.09759 0.93732
1.21512 0.82730 0.76031 0.92294 1.90799 1.56361 1.51480 1.47965
1.48270 1.05271 1.71785 1.08221 1.22362 0.90807 1.00745 0.88571
1.22019 0.99393 0.97905 0.97645 1.21618 0.96312 1.03765 0.92900
1.21613 0.96847 0.96764 0.95950 0.94413 1.20495 0.89284 0.96931
0.86872 0.92873 1.22331 0.99421 0.98635 1.00995 1.42741 1.16279
1.68826 1.09994 1.19675 0.99519 1.27686 0.89289 0.90132 1.25636
0.96387 1.03072 1.02519 1.69893 1.07132 1.50988 1.34650 0.85067
0.77697 0.77120 0.79885 1.18337 1.22382 1.22453 1.21317 0.97004
0.98638 0.82097 1.17534 0.90371 0.82755 0.78704 1.90896 1.70269
1.32327 1.56591 1.21901 0.91643 1.00865 1.17280 0.87930 0.88783
0.91234 0.79810 0.77824 0.85296 0.80082 0.87867 0.86938 0.93281
0.86658 0.90302 0.89788 0.89872 0.95076 0.94551 0.80467 0.94449
0.93897 0.90769 0.84422
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.45 10.03 71.23 0.71 -0.74 16
2 C 0.03 0.63 5.89 -19.82 -0.12 0.52 16
3 C -0.23 -3.47 9.71 22.08 0.21 -3.26 16
4 C 0.14 2.27 10.28 83.42 0.86 3.13 16
5 N -0.48 -12.02 2.07 -655.04 -1.36 -13.38 16
6 C 0.08 1.60 4.16 85.63 0.36 1.96 16
7 C 0.49 15.46 7.76 87.66 0.68 16.14 16
8 O -0.59 -26.71 15.84 -3.04 -0.05 -26.76 16
9 N -0.60 -16.54 2.97 -818.07 -2.43 -18.97 16
10 C 0.10 1.38 6.37 86.51 0.55 1.93 16
11 C -0.13 -2.09 6.10 30.82 0.19 -1.90 16
12 C -0.11 -2.31 4.85 30.62 0.15 -2.16 16
13 C -0.09 -3.08 1.97 -10.72 -0.02 -3.10 16
14 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16
15 C 0.17 6.86 2.47 44.99 0.11 6.98 16
16 H 0.05 2.05 8.08 -2.38 -0.02 2.03 16
17 C -0.15 -5.50 9.15 71.98 0.66 -4.84 16
18 N -0.74 -39.54 4.52 -322.93 -1.46 -41.00 16
19 C -0.23 -13.27 9.93 84.03 0.83 -12.43 16
20 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16
21 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16
22 N -0.98 -64.97 13.06 21.65 0.28 -64.69 16
23 Si 0.97 48.62 29.55 68.60 2.03 50.65 16
24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16
25 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16
26 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16
27 C 0.13 4.76 5.47 86.36 0.47 5.24 16
28 C 0.50 16.86 7.40 84.82 0.63 17.49 16
29 O -0.61 -26.14 16.64 -5.52 -0.09 -26.23 16
30 C -0.30 -8.30 9.65 22.40 0.22 -8.08 16
31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16
32 H 0.09 0.79 8.10 -2.38 -0.02 0.77 16
33 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16
34 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16
35 H 0.21 1.37 8.03 -2.91 -0.02 1.35 16
36 H 0.13 2.65 6.95 -2.38 -0.02 2.63 16
37 H 0.18 1.23 7.80 -2.39 -0.02 1.21 16
38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16
39 H 0.11 0.88 5.93 -2.39 -0.01 0.87 16
40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16
42 H 0.08 1.58 6.36 -2.39 -0.02 1.57 16
43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
44 H 0.08 2.22 6.41 -2.39 -0.02 2.21 16
45 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16
46 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16
47 H 0.36 22.15 7.61 -92.71 -0.71 21.44 16
48 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16
49 H 0.04 2.11 6.51 -2.38 -0.02 2.09 16
50 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16
51 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16
Total: -1.00 -98.47 408.08 4.11 -94.36
By element:
Atomic # 1 Polarization: 33.62 SS G_CDS: 0.22 Total: 33.85 kcal
Atomic # 6 Polarization: 5.21 SS G_CDS: 6.96 Total: 12.17 kcal
Atomic # 7 Polarization: -133.08 SS G_CDS: -4.96 Total: -138.04 kcal
Atomic # 8 Polarization: -52.85 SS G_CDS: -0.14 Total: -52.99 kcal
Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal
Total: -98.47 4.11 -94.36 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482477336.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.085 kcal
(2) G-P(sol) polarization free energy of solvation -98.468 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.358 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.273 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds