Wall clock time and date at job start Wed Apr 1 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40198 * 120.36802 * 2 1 4 4 C 1.35354 * 119.94862 * 179.76862 * 3 2 1 5 5 N 1.35759 * 120.70220 * 0.51315 * 4 3 2 6 6 C 1.46499 * 119.62445 * 179.75806 * 5 4 3 7 7 C 1.50700 * 109.47257 * 269.72600 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27849 * 7 6 5 10 10 C 1.46921 * 120.63392 * 359.43977 * 9 7 6 11 11 C 1.53624 * 108.54016 * 126.36873 * 10 9 7 12 12 C 1.53041 * 109.23819 * 54.86424 * 11 10 9 13 13 C 1.53037 * 109.53606 * 298.50541 * 12 11 10 14 14 H 1.09008 * 109.50055 * 301.41274 * 13 12 11 15 15 C 1.52998 * 109.49828 * 181.32143 * 13 12 11 16 16 H 1.09006 * 109.47342 * 300.16030 * 15 13 12 17 17 C 1.53003 * 109.47202 * 60.16155 * 15 13 12 18 18 N 1.46501 * 109.47375 * 180.16326 * 15 13 12 19 19 C 1.36936 * 120.00049 * 154.99998 * 18 15 13 20 20 H 1.07996 * 120.00555 * 359.97438 * 19 18 15 21 21 C 1.38814 * 119.99865 * 180.02562 * 19 18 15 22 22 N 1.31626 * 120.00161 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47104 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47165 * 120.00201 * 23 21 19 26 26 H 1.48504 * 109.46987 * 240.00257 * 23 21 19 27 27 C 1.46924 * 120.62813 * 179.72946 * 9 7 6 28 28 C 1.34665 * 120.74767 * 359.48432 * 5 4 3 29 29 O 1.22064 * 119.98225 * 180.27676 * 28 5 4 30 30 C 1.36394 * 120.36820 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47083 * 269.97457 * 1 2 3 32 32 H 1.09006 * 109.47065 * 29.97814 * 1 2 3 33 33 H 1.08999 * 109.47362 * 149.97915 * 1 2 3 34 34 H 1.08001 * 120.02653 * 0.04183 * 3 2 1 35 35 H 1.08001 * 119.64484 * 180.27126 * 4 3 2 36 36 H 1.09009 * 109.46700 * 149.72494 * 6 5 4 37 37 H 1.08998 * 109.46827 * 29.73069 * 6 5 4 38 38 H 1.09000 * 109.59076 * 246.20663 * 10 9 7 39 39 H 1.09000 * 109.58577 * 6.63206 * 10 9 7 40 40 H 1.08990 * 109.63928 * 294.86618 * 11 10 9 41 41 H 1.09008 * 109.43003 * 174.72634 * 11 10 9 42 42 H 1.09003 * 109.46117 * 178.48816 * 12 11 10 43 43 H 1.08996 * 109.45315 * 58.52100 * 12 11 10 44 44 H 1.09003 * 109.46860 * 299.99897 * 17 15 13 45 45 H 1.08995 * 109.46982 * 60.00462 * 17 15 13 46 46 H 1.08998 * 109.47071 * 180.02562 * 17 15 13 47 47 H 0.97001 * 119.99945 * 334.99351 * 18 15 13 48 48 H 0.96993 * 120.00155 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.58932 * 353.36359 * 27 9 7 50 50 H 1.08998 * 109.59450 * 113.65039 * 27 9 7 51 51 H 1.07997 * 120.35154 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0274 -0.0009 6 6 5.7187 0.0443 -0.0010 7 6 6.2210 0.0501 -1.4218 8 8 5.4329 0.0405 -2.3436 9 7 7.5461 0.0596 -1.6681 10 6 8.5129 0.0769 -0.5620 11 6 9.4949 -1.0889 -0.7533 12 6 10.1285 -0.9917 -2.1430 13 6 9.0381 -1.1006 -3.2113 14 1 8.5096 -2.0470 -3.0967 15 6 9.6761 -1.0363 -4.6005 16 1 10.2055 -0.0903 -4.7138 17 6 10.6618 -2.1951 -4.7631 18 7 8.6315 -1.1367 -5.6227 19 6 8.8409 -0.6109 -6.8696 20 1 9.7760 -0.1218 -7.0994 21 6 7.8509 -0.7055 -7.8380 22 7 6.7106 -1.3002 -7.5576 23 14 8.1363 0.0124 -9.5388 24 1 9.4882 0.6241 -9.5974 25 1 8.0359 -1.0662 -10.5546 26 1 7.1114 1.0506 -9.8162 27 6 8.0510 0.0594 -3.0478 28 6 3.6016 -1.1508 -0.0010 29 8 4.2312 -2.1965 -0.0010 30 6 2.1965 -1.1768 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6822 2.1486 0.0007 35 1 4.1102 2.1344 0.0092 36 1 6.0923 -0.8416 0.5129 37 1 6.0718 0.9383 0.5129 38 1 9.0572 1.0213 -0.5670 39 1 7.9865 -0.0387 0.3854 40 1 8.9622 -2.0354 -0.6617 41 1 10.2746 -1.0348 0.0066 42 1 10.8460 -1.8020 -2.2725 43 1 10.6401 -0.0344 -2.2425 44 1 11.4391 -2.1204 -4.0026 45 1 10.1324 -3.1411 -4.6499 46 1 11.1166 -2.1491 -5.7526 47 1 7.7915 -1.5757 -5.4163 48 1 6.0190 -1.3667 -8.2344 49 1 7.2197 -0.0678 -3.7412 50 1 8.5562 1.0034 -3.2523 51 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482477336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:19 Heat of formation + Delta-G solvation = -53.273366 kcal Electronic energy + Delta-G solvation = -31397.022246 eV Core-core repulsion = 27295.865360 eV Total energy + Delta-G solvation = -4101.156886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.57967 -41.10427 -39.13229 -38.12619 -37.00370 -36.26651 -34.70885 -33.16912 -31.92070 -31.19116 -30.54341 -29.79770 -27.98902 -26.51935 -25.52816 -24.68127 -24.31796 -22.78167 -22.26373 -21.11762 -20.26090 -19.19121 -18.71035 -18.55234 -18.29602 -17.07201 -16.90359 -16.73999 -16.51090 -16.22073 -15.64428 -15.59191 -15.35468 -15.19747 -15.04538 -14.86830 -14.37749 -14.27370 -14.16277 -14.03160 -13.92546 -13.58691 -13.43713 -13.35782 -13.06536 -13.02579 -12.87748 -12.82527 -12.57651 -12.48960 -12.38824 -12.12306 -12.01124 -11.85500 -11.70869 -11.44603 -11.25964 -11.13353 -11.12085 -10.97818 -10.54380 -9.68375 -9.02235 -9.00461 -7.93570 -5.23153 -0.14276 0.89758 1.39324 1.42674 1.44829 1.46821 1.54634 2.01121 2.54545 2.64348 3.35733 3.39757 3.60514 3.69471 3.72126 3.83049 3.84514 3.92431 4.02598 4.10160 4.11091 4.17376 4.28453 4.32288 4.37129 4.41585 4.58330 4.61827 4.75059 4.77392 4.81601 4.83273 4.87200 4.90198 4.92268 5.01273 5.02632 5.08559 5.15539 5.22310 5.26142 5.37179 5.46478 5.47255 5.49215 5.54067 5.61412 5.64799 6.02957 6.26652 6.32436 6.93558 7.04491 7.31175 8.08850 8.31217 9.30338 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.003069 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.356054 B = 9121.436215 C =11117.901818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.232 4.232 4 C 0.139 3.861 5 N -0.485 5.485 6 C 0.079 3.921 7 C 0.487 3.513 8 O -0.586 6.586 9 N -0.603 5.603 10 C 0.096 3.904 11 C -0.132 4.132 12 C -0.108 4.108 13 C -0.092 4.092 14 H 0.037 0.963 15 C 0.172 3.828 16 H 0.053 0.947 17 C -0.154 4.154 18 N -0.739 5.739 19 C -0.230 4.230 20 H 0.081 0.919 21 C -0.085 4.085 22 N -0.975 5.975 23 Si 0.973 3.027 24 H -0.259 1.259 25 H -0.296 1.296 26 H -0.297 1.297 27 C 0.132 3.868 28 C 0.501 3.499 29 O -0.613 6.613 30 C -0.295 4.295 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.205 0.795 36 H 0.129 0.871 37 H 0.182 0.818 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.048 0.952 41 H 0.115 0.885 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.030 0.970 46 H 0.035 0.965 47 H 0.365 0.635 48 H 0.247 0.753 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 10.806 27.054 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.254 4.254 4 C 0.013 3.987 5 N -0.194 5.194 6 C -0.046 4.046 7 C 0.274 3.726 8 O -0.466 6.466 9 N -0.335 5.335 10 C -0.025 4.025 11 C -0.170 4.170 12 C -0.146 4.146 13 C -0.112 4.112 14 H 0.056 0.944 15 C 0.064 3.936 16 H 0.071 0.929 17 C -0.214 4.214 18 N -0.378 5.378 19 C -0.362 4.362 20 H 0.099 0.901 21 C -0.276 4.276 22 N -0.627 5.627 23 Si 0.802 3.198 24 H -0.183 1.183 25 H -0.224 1.224 26 H -0.225 1.225 27 C 0.009 3.991 28 C 0.306 3.694 29 O -0.501 6.501 30 C -0.317 4.317 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.202 0.798 35 H 0.222 0.778 36 H 0.147 0.853 37 H 0.199 0.801 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.067 0.933 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.195 0.805 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.092 0.908 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.110 10.262 26.451 28.394 hybrid contribution -0.635 -0.718 -1.854 2.087 sum -1.744 9.544 24.597 26.441 Atomic orbital electron populations 1.21040 0.87901 1.04428 1.04499 1.20663 0.98618 0.92101 0.85762 1.21083 0.92499 0.99799 1.11970 1.22732 0.94487 0.89700 0.91777 1.45114 1.08061 1.07486 1.58695 1.22086 0.78987 1.09759 0.93732 1.21512 0.82730 0.76031 0.92294 1.90799 1.56361 1.51480 1.47965 1.48270 1.05271 1.71785 1.08221 1.22362 0.90807 1.00745 0.88571 1.22019 0.99393 0.97905 0.97645 1.21618 0.96312 1.03765 0.92900 1.21613 0.96847 0.96764 0.95950 0.94413 1.20495 0.89284 0.96931 0.86872 0.92873 1.22331 0.99421 0.98635 1.00995 1.42741 1.16279 1.68826 1.09994 1.19675 0.99519 1.27686 0.89289 0.90132 1.25636 0.96387 1.03072 1.02519 1.69893 1.07132 1.50988 1.34650 0.85067 0.77697 0.77120 0.79885 1.18337 1.22382 1.22453 1.21317 0.97004 0.98638 0.82097 1.17534 0.90371 0.82755 0.78704 1.90896 1.70269 1.32327 1.56591 1.21901 0.91643 1.00865 1.17280 0.87930 0.88783 0.91234 0.79810 0.77824 0.85296 0.80082 0.87867 0.86938 0.93281 0.86658 0.90302 0.89788 0.89872 0.95076 0.94551 0.80467 0.94449 0.93897 0.90769 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 10.03 71.23 0.71 -0.74 16 2 C 0.03 0.63 5.89 -19.82 -0.12 0.52 16 3 C -0.23 -3.47 9.71 22.08 0.21 -3.26 16 4 C 0.14 2.27 10.28 83.42 0.86 3.13 16 5 N -0.48 -12.02 2.07 -655.04 -1.36 -13.38 16 6 C 0.08 1.60 4.16 85.63 0.36 1.96 16 7 C 0.49 15.46 7.76 87.66 0.68 16.14 16 8 O -0.59 -26.71 15.84 -3.04 -0.05 -26.76 16 9 N -0.60 -16.54 2.97 -818.07 -2.43 -18.97 16 10 C 0.10 1.38 6.37 86.51 0.55 1.93 16 11 C -0.13 -2.09 6.10 30.82 0.19 -1.90 16 12 C -0.11 -2.31 4.85 30.62 0.15 -2.16 16 13 C -0.09 -3.08 1.97 -10.72 -0.02 -3.10 16 14 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 15 C 0.17 6.86 2.47 44.99 0.11 6.98 16 16 H 0.05 2.05 8.08 -2.38 -0.02 2.03 16 17 C -0.15 -5.50 9.15 71.98 0.66 -4.84 16 18 N -0.74 -39.54 4.52 -322.93 -1.46 -41.00 16 19 C -0.23 -13.27 9.93 84.03 0.83 -12.43 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 21 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16 22 N -0.98 -64.97 13.06 21.65 0.28 -64.69 16 23 Si 0.97 48.62 29.55 68.60 2.03 50.65 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 26 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 27 C 0.13 4.76 5.47 86.36 0.47 5.24 16 28 C 0.50 16.86 7.40 84.82 0.63 17.49 16 29 O -0.61 -26.14 16.64 -5.52 -0.09 -26.23 16 30 C -0.30 -8.30 9.65 22.40 0.22 -8.08 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.79 8.10 -2.38 -0.02 0.77 16 33 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 34 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.21 1.37 8.03 -2.91 -0.02 1.35 16 36 H 0.13 2.65 6.95 -2.38 -0.02 2.63 16 37 H 0.18 1.23 7.80 -2.39 -0.02 1.21 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 0.88 5.93 -2.39 -0.01 0.87 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.08 1.58 6.36 -2.39 -0.02 1.57 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 2.22 6.41 -2.39 -0.02 2.21 16 45 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.36 22.15 7.61 -92.71 -0.71 21.44 16 48 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16 49 H 0.04 2.11 6.51 -2.38 -0.02 2.09 16 50 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -98.47 408.08 4.11 -94.36 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.22 Total: 33.85 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 6.96 Total: 12.17 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -4.96 Total: -138.04 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -0.14 Total: -52.99 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -98.47 4.11 -94.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482477336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.085 kcal (2) G-P(sol) polarization free energy of solvation -98.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds