Wall clock time and date at job start Wed Apr 1 2020 05:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40199 * 120.36637 * 2 1 4 4 C 1.35348 * 119.94911 * 179.76925 * 3 2 1 5 5 N 1.35767 * 120.70022 * 0.53306 * 4 3 2 6 6 C 1.46495 * 119.62644 * 179.72178 * 5 4 3 7 7 C 1.50706 * 109.46719 * 269.72125 * 6 5 4 8 8 O 1.21283 * 119.99954 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99995 * 179.97438 * 7 6 5 10 10 C 1.46925 * 120.62922 * 5.92350 * 9 7 6 11 11 C 1.53190 * 108.77997 * 126.38770 * 10 9 7 12 12 C 1.53037 * 109.31101 * 54.62928 * 11 10 9 13 13 C 1.53041 * 109.54169 * 298.63766 * 12 11 10 14 14 H 1.08998 * 109.49466 * 181.31897 * 13 12 11 15 15 C 1.53000 * 109.52075 * 301.39795 * 13 12 11 16 16 C 1.46927 * 120.63316 * 185.91378 * 9 7 6 17 17 H 1.08997 * 109.58369 * 113.82350 * 16 9 7 18 18 C 1.53003 * 109.70110 * 353.47016 * 16 9 7 19 19 N 1.46497 * 109.47141 * 69.68695 * 18 16 9 20 20 C 1.36936 * 120.00352 * 174.76607 * 19 18 16 21 21 H 1.08003 * 119.99801 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00531 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99496 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00285 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46797 * 89.99850 * 24 22 20 26 26 H 1.48495 * 109.47384 * 209.99932 * 24 22 20 27 27 H 1.48505 * 109.46818 * 330.00265 * 24 22 20 28 28 C 1.34657 * 120.74808 * 359.43428 * 5 4 3 29 29 O 1.22067 * 119.98875 * 180.27814 * 28 5 4 30 30 C 1.36394 * 120.36874 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46980 * 269.97994 * 1 2 3 32 32 H 1.08996 * 109.47046 * 29.97606 * 1 2 3 33 33 H 1.08999 * 109.46983 * 149.97855 * 1 2 3 34 34 H 1.08001 * 120.02389 * 0.02562 * 3 2 1 35 35 H 1.07997 * 119.65248 * 180.24084 * 4 3 2 36 36 H 1.08997 * 109.47410 * 149.72103 * 6 5 4 37 37 H 1.08998 * 109.47508 * 29.72112 * 6 5 4 38 38 H 1.08996 * 109.58898 * 6.59377 * 10 9 7 39 39 H 1.09001 * 109.69871 * 246.24515 * 10 9 7 40 40 H 1.09002 * 109.49244 * 294.67923 * 11 10 9 41 41 H 1.09003 * 109.52564 * 174.59771 * 11 10 9 42 42 H 1.09000 * 109.45944 * 178.61489 * 12 11 10 43 43 H 1.09002 * 109.46107 * 58.65934 * 12 11 10 44 44 H 1.08999 * 109.47054 * 179.85066 * 15 13 12 45 45 H 1.08998 * 109.47281 * 299.84962 * 15 13 12 46 46 H 1.08996 * 109.46957 * 59.85608 * 15 13 12 47 47 H 1.09000 * 109.47142 * 189.68536 * 18 16 9 48 48 H 1.08997 * 109.47190 * 309.68784 * 18 16 9 49 49 H 0.97007 * 119.99953 * 354.75839 * 19 18 16 50 50 H 0.97008 * 120.00033 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.34581 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1998 0.0047 5 7 4.2539 0.0274 -0.0014 6 6 5.7187 0.0442 -0.0022 7 6 6.2201 0.0499 -1.4234 8 8 5.4314 0.0404 -2.3448 9 7 7.5449 0.0657 -1.6706 10 6 8.5129 -0.0531 -0.5717 11 6 9.4768 -1.2016 -0.8854 12 6 10.1105 -0.9695 -2.2590 13 6 9.0177 -0.9497 -3.3302 14 1 9.4720 -0.8078 -4.3107 15 6 8.2556 -2.2762 -3.3076 16 6 8.0487 0.2017 -3.0441 17 1 8.5702 1.1530 -3.1494 18 6 6.8800 0.1455 -4.0300 19 7 6.0720 1.3605 -3.8993 20 6 5.0289 1.5847 -4.7576 21 1 4.8021 0.8660 -5.5313 22 6 4.2628 2.7357 -4.6335 23 7 4.5389 3.6112 -3.6903 24 14 2.8403 3.0418 -5.8048 25 1 1.5991 2.4533 -5.2405 26 1 2.6559 4.5038 -5.9883 27 1 3.1350 2.4115 -7.1167 28 6 3.6017 -1.1507 -0.0008 29 8 4.2312 -2.1965 -0.0012 30 6 2.1966 -1.1768 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6821 2.1486 0.0004 35 1 4.1103 2.1344 0.0086 36 1 6.0926 -0.8414 0.5114 37 1 6.0722 0.9383 0.5113 38 1 7.9854 -0.2626 0.3589 39 1 9.0726 0.8771 -0.4729 40 1 8.9295 -2.1443 -0.8918 41 1 10.2579 -1.2395 -0.1261 42 1 10.8153 -1.7727 -2.4740 43 1 10.6368 -0.0150 -2.2595 44 1 7.4758 -2.2602 -4.0690 45 1 8.9455 -3.0952 -3.5113 46 1 7.8024 -2.4182 -2.3265 47 1 7.2658 0.0734 -5.0470 48 1 6.2630 -0.7263 -3.8128 49 1 6.2758 2.0061 -3.2046 50 1 4.0039 4.4158 -3.6037 51 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482496645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:53 Heat of formation + Delta-G solvation = 17.338045 kcal Electronic energy + Delta-G solvation = -33355.882414 eV Core-core repulsion = 29257.787468 eV Total energy + Delta-G solvation = -4098.094946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.22121 -40.12772 -37.31694 -36.67137 -35.18620 -34.30983 -33.30471 -32.06914 -30.31303 -29.99771 -29.13497 -27.43504 -26.40805 -25.79697 -24.09148 -23.38475 -22.66885 -21.68541 -20.99072 -19.95303 -18.35326 -17.26923 -17.20231 -17.08657 -16.45846 -15.73489 -15.52112 -15.06376 -14.98433 -14.77673 -14.30502 -14.19873 -13.87895 -13.74574 -13.65585 -13.38787 -13.19895 -13.05359 -12.94156 -12.53896 -12.48979 -12.35874 -12.10064 -11.98973 -11.79432 -11.50712 -11.40434 -11.35938 -11.30310 -10.96650 -10.89023 -10.71744 -10.61060 -10.30993 -10.18625 -9.85415 -9.67788 -9.57651 -9.51221 -8.74771 -8.32187 -8.07463 -7.60567 -6.53533 -5.58166 -2.77091 1.15047 2.24139 2.78768 3.23717 3.41717 3.53610 3.57752 3.59339 3.99273 4.69069 4.72779 4.77353 4.81744 4.90793 4.91627 4.99341 5.01548 5.11790 5.20585 5.26749 5.32063 5.42161 5.49567 5.55740 5.58612 5.61058 5.74416 5.77581 5.79249 5.80554 5.84395 5.91467 5.93045 5.96520 6.02573 6.17357 6.23505 6.25615 6.34666 6.37279 6.52825 6.59646 6.65213 6.68128 6.82605 6.95849 7.32138 7.40392 7.86631 7.88107 8.37309 8.60741 8.85675 9.72572 10.31712 10.66945 11.66047 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.005755 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.879764 B = 4864.306893 C = 7453.840169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.021 3.979 3 C -0.233 4.233 4 C 0.166 3.834 5 N -0.475 5.475 6 C 0.075 3.925 7 C 0.464 3.536 8 O -0.429 6.429 9 N -0.611 5.611 10 C 0.111 3.889 11 C -0.137 4.137 12 C -0.112 4.112 13 C -0.100 4.100 14 H 0.078 0.922 15 C -0.144 4.144 16 C 0.150 3.850 17 H 0.068 0.932 18 C 0.158 3.842 19 N -0.698 5.698 20 C -0.202 4.202 21 H 0.063 0.937 22 C -0.020 4.020 23 N -0.940 5.940 24 Si 0.898 3.102 25 H -0.294 1.294 26 H -0.295 1.295 27 H -0.286 1.286 28 C 0.525 3.475 29 O -0.565 6.565 30 C -0.260 4.260 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.057 0.943 47 H 0.013 0.987 48 H 0.047 0.953 49 H 0.377 0.623 50 H 0.248 0.752 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 -6.246 12.633 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.017 3.983 3 C -0.255 4.255 4 C 0.039 3.961 5 N -0.184 5.184 6 C -0.051 4.051 7 C 0.247 3.753 8 O -0.295 6.295 9 N -0.350 5.350 10 C -0.013 4.013 11 C -0.175 4.175 12 C -0.149 4.149 13 C -0.120 4.120 14 H 0.096 0.904 15 C -0.201 4.201 16 C 0.046 3.954 17 H 0.086 0.914 18 C 0.031 3.969 19 N -0.341 5.341 20 C -0.334 4.334 21 H 0.081 0.919 22 C -0.214 4.214 23 N -0.592 5.592 24 Si 0.731 3.269 25 H -0.222 1.222 26 H -0.222 1.222 27 H -0.212 1.212 28 C 0.328 3.672 29 O -0.449 6.449 30 C -0.281 4.281 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.179 0.821 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.030 0.970 48 H 0.065 0.935 49 H 0.211 0.789 50 H 0.058 0.942 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.446 -6.954 11.943 14.854 hybrid contribution -0.668 0.650 -0.436 1.029 sum 4.778 -6.304 11.507 13.964 Atomic orbital electron populations 1.20906 0.90797 1.03530 1.02558 1.20162 0.96484 0.92812 0.88809 1.20446 0.92493 0.98690 1.13904 1.21903 0.93603 0.89480 0.91143 1.44966 1.07274 1.07154 1.59030 1.21817 0.79679 1.05555 0.98082 1.20409 0.82954 0.81171 0.90733 1.91155 1.54453 1.41598 1.42320 1.47750 1.04635 1.75621 1.06983 1.21608 0.91428 0.98473 0.89784 1.21958 0.98735 0.99331 0.97513 1.21519 0.97293 1.01636 0.94486 1.21468 0.95657 0.95934 0.98921 0.90381 1.21843 0.99951 0.95616 1.02695 1.21484 0.95699 0.96831 0.81339 0.91412 1.20987 0.89720 0.93158 0.93040 1.42205 1.34303 1.19733 1.37839 1.19146 1.05172 1.02014 1.07056 0.91936 1.24523 0.99746 0.97802 0.99353 1.69640 1.42284 1.11881 1.35383 0.86282 0.83371 0.76618 0.80608 1.22171 1.22166 1.21181 1.16981 0.89233 0.82404 0.78556 1.90894 1.69310 1.30412 1.54277 1.21780 0.92418 0.99152 1.14768 0.90452 0.90774 0.91054 0.84009 0.82070 0.86574 0.87315 0.90585 0.91667 0.91048 0.91243 0.92007 0.91931 0.92100 0.93483 0.92354 0.96981 0.93508 0.78947 0.94227 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.03 36.01 0.36 -0.97 16 2 C 0.02 0.31 5.89 -104.55 -0.62 -0.30 16 3 C -0.23 -3.46 9.71 -39.88 -0.39 -3.85 16 4 C 0.17 2.61 10.28 -16.84 -0.17 2.44 16 5 N -0.47 -8.04 2.07 -121.07 -0.25 -8.29 16 6 C 0.07 1.11 4.23 -5.19 -0.02 1.08 16 7 C 0.46 8.52 7.16 -10.98 -0.08 8.44 16 8 O -0.43 -10.13 10.29 5.55 0.06 -10.08 16 9 N -0.61 -9.36 2.41 -165.22 -0.40 -9.76 16 10 C 0.11 1.20 6.32 -3.71 -0.02 1.18 16 11 C -0.14 -1.34 5.74 -26.61 -0.15 -1.49 16 12 C -0.11 -1.16 5.43 -26.69 -0.14 -1.31 16 13 C -0.10 -1.33 2.79 -90.50 -0.25 -1.58 16 14 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 15 C -0.14 -2.03 8.22 37.16 0.31 -1.72 16 16 C 0.15 2.49 2.62 -67.60 -0.18 2.31 16 17 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 18 C 0.16 3.43 4.05 -4.04 -0.02 3.41 16 19 N -0.70 -18.20 3.25 -59.91 -0.19 -18.40 16 20 C -0.20 -5.91 9.75 -15.06 -0.15 -6.06 16 21 H 0.06 1.85 7.83 -52.48 -0.41 1.44 16 22 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 23 N -0.94 -28.25 13.06 55.49 0.72 -27.53 16 24 Si 0.90 23.46 29.55 -169.99 -5.02 18.44 16 25 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 26 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 28 C 0.52 9.99 7.40 -15.45 -0.11 9.88 16 29 O -0.56 -12.23 16.64 4.86 0.08 -12.15 16 30 C -0.26 -4.34 9.65 -39.38 -0.38 -4.72 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 35 H 0.16 2.28 8.03 -52.49 -0.42 1.85 16 36 H 0.12 1.61 6.69 -51.93 -0.35 1.26 16 37 H 0.11 1.22 7.99 -51.93 -0.42 0.80 16 38 H 0.08 0.69 5.97 -51.93 -0.31 0.38 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.78 6.34 -51.93 -0.33 0.46 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.98 6.57 -51.93 -0.34 0.64 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.89 5.97 -51.93 -0.31 0.58 16 47 H 0.01 0.27 8.12 -51.93 -0.42 -0.15 16 48 H 0.05 1.13 5.06 -51.93 -0.26 0.87 16 49 H 0.38 10.28 7.09 -40.82 -0.29 9.99 16 50 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 51 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -36.85 394.79 -9.23 -46.08 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -8.06 Total: 9.69 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -2.11 Total: 6.04 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -0.12 Total: -63.98 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.14 Total: -22.22 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.44 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.85 -9.23 -46.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482496645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.422 kcal (2) G-P(sol) polarization free energy of solvation -36.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds