Wall clock time and date at job start Wed Apr 1 2020 05:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40199 * 120.36637 * 2 1 4 4 C 1.35348 * 119.94911 * 179.76925 * 3 2 1 5 5 N 1.35767 * 120.70022 * 0.53306 * 4 3 2 6 6 C 1.46495 * 119.62644 * 179.72178 * 5 4 3 7 7 C 1.50706 * 109.46719 * 269.72125 * 6 5 4 8 8 O 1.21283 * 119.99954 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99995 * 179.97438 * 7 6 5 10 10 C 1.46925 * 120.62922 * 5.92350 * 9 7 6 11 11 C 1.53190 * 108.77997 * 126.38770 * 10 9 7 12 12 C 1.53037 * 109.31101 * 54.62928 * 11 10 9 13 13 C 1.53041 * 109.54169 * 298.63766 * 12 11 10 14 14 H 1.08998 * 109.49466 * 181.31897 * 13 12 11 15 15 C 1.53000 * 109.52075 * 301.39795 * 13 12 11 16 16 C 1.46927 * 120.63316 * 185.91378 * 9 7 6 17 17 H 1.08997 * 109.58369 * 113.82350 * 16 9 7 18 18 C 1.53003 * 109.70110 * 353.47016 * 16 9 7 19 19 N 1.46497 * 109.47141 * 69.68695 * 18 16 9 20 20 C 1.36936 * 120.00352 * 174.76607 * 19 18 16 21 21 H 1.08003 * 119.99801 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00531 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99496 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00285 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46797 * 89.99850 * 24 22 20 26 26 H 1.48495 * 109.47384 * 209.99932 * 24 22 20 27 27 H 1.48505 * 109.46818 * 330.00265 * 24 22 20 28 28 C 1.34657 * 120.74808 * 359.43428 * 5 4 3 29 29 O 1.22067 * 119.98875 * 180.27814 * 28 5 4 30 30 C 1.36394 * 120.36874 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46980 * 269.97994 * 1 2 3 32 32 H 1.08996 * 109.47046 * 29.97606 * 1 2 3 33 33 H 1.08999 * 109.46983 * 149.97855 * 1 2 3 34 34 H 1.08001 * 120.02389 * 0.02562 * 3 2 1 35 35 H 1.07997 * 119.65248 * 180.24084 * 4 3 2 36 36 H 1.08997 * 109.47410 * 149.72103 * 6 5 4 37 37 H 1.08998 * 109.47508 * 29.72112 * 6 5 4 38 38 H 1.08996 * 109.58898 * 6.59377 * 10 9 7 39 39 H 1.09001 * 109.69871 * 246.24515 * 10 9 7 40 40 H 1.09002 * 109.49244 * 294.67923 * 11 10 9 41 41 H 1.09003 * 109.52564 * 174.59771 * 11 10 9 42 42 H 1.09000 * 109.45944 * 178.61489 * 12 11 10 43 43 H 1.09002 * 109.46107 * 58.65934 * 12 11 10 44 44 H 1.08999 * 109.47054 * 179.85066 * 15 13 12 45 45 H 1.08998 * 109.47281 * 299.84962 * 15 13 12 46 46 H 1.08996 * 109.46957 * 59.85608 * 15 13 12 47 47 H 1.09000 * 109.47142 * 189.68536 * 18 16 9 48 48 H 1.08997 * 109.47190 * 309.68784 * 18 16 9 49 49 H 0.97007 * 119.99953 * 354.75839 * 19 18 16 50 50 H 0.97008 * 120.00033 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.34581 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1998 0.0047 5 7 4.2539 0.0274 -0.0014 6 6 5.7187 0.0442 -0.0022 7 6 6.2201 0.0499 -1.4234 8 8 5.4314 0.0404 -2.3448 9 7 7.5449 0.0657 -1.6706 10 6 8.5129 -0.0531 -0.5717 11 6 9.4768 -1.2016 -0.8854 12 6 10.1105 -0.9695 -2.2590 13 6 9.0177 -0.9497 -3.3302 14 1 9.4720 -0.8078 -4.3107 15 6 8.2556 -2.2762 -3.3076 16 6 8.0487 0.2017 -3.0441 17 1 8.5702 1.1530 -3.1494 18 6 6.8800 0.1455 -4.0300 19 7 6.0720 1.3605 -3.8993 20 6 5.0289 1.5847 -4.7576 21 1 4.8021 0.8660 -5.5313 22 6 4.2628 2.7357 -4.6335 23 7 4.5389 3.6112 -3.6903 24 14 2.8403 3.0418 -5.8048 25 1 1.5991 2.4533 -5.2405 26 1 2.6559 4.5038 -5.9883 27 1 3.1350 2.4115 -7.1167 28 6 3.6017 -1.1507 -0.0008 29 8 4.2312 -2.1965 -0.0012 30 6 2.1966 -1.1768 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6821 2.1486 0.0004 35 1 4.1103 2.1344 0.0086 36 1 6.0926 -0.8414 0.5114 37 1 6.0722 0.9383 0.5113 38 1 7.9854 -0.2626 0.3589 39 1 9.0726 0.8771 -0.4729 40 1 8.9295 -2.1443 -0.8918 41 1 10.2579 -1.2395 -0.1261 42 1 10.8153 -1.7727 -2.4740 43 1 10.6368 -0.0150 -2.2595 44 1 7.4758 -2.2602 -4.0690 45 1 8.9455 -3.0952 -3.5113 46 1 7.8024 -2.4182 -2.3265 47 1 7.2658 0.0734 -5.0470 48 1 6.2630 -0.7263 -3.8128 49 1 6.2758 2.0061 -3.2046 50 1 4.0039 4.4158 -3.6037 51 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482496645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:51 Heat of formation + Delta-G solvation = -5.546636 kcal Electronic energy + Delta-G solvation = -33356.874768 eV Core-core repulsion = 29257.787468 eV Total energy + Delta-G solvation = -4099.087300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.53045 -41.41840 -38.59572 -38.04476 -36.65866 -35.90275 -34.61822 -33.65518 -31.82105 -31.34321 -30.41146 -28.77525 -27.52503 -27.21814 -25.61995 -24.63987 -24.23339 -22.99059 -22.33706 -21.17313 -19.69604 -19.01354 -18.48072 -18.37725 -17.93845 -17.03283 -16.83847 -16.71742 -16.33040 -16.05402 -15.79069 -15.41681 -15.22254 -15.15099 -14.94635 -14.87170 -14.59452 -14.20914 -14.13276 -13.96314 -13.82214 -13.55027 -13.34670 -13.26820 -12.98690 -12.92983 -12.85462 -12.70606 -12.63873 -12.47870 -12.43519 -12.11519 -12.03425 -11.85499 -11.62423 -11.28065 -11.22583 -11.05815 -10.90278 -10.76163 -9.83579 -9.42476 -8.93776 -8.61611 -7.82710 -5.00542 -0.09097 0.93879 1.42590 1.44719 1.51736 1.54760 1.87602 2.17407 2.61242 2.70795 3.48783 3.55651 3.66071 3.72586 3.77727 3.84946 3.90816 3.92161 4.08398 4.14011 4.15385 4.26934 4.32900 4.38876 4.41090 4.44444 4.51970 4.65700 4.75503 4.79995 4.80197 4.81362 4.87644 4.90959 4.92594 5.01485 5.11326 5.13132 5.20954 5.23668 5.27023 5.31195 5.38896 5.47704 5.52643 5.56482 5.64796 5.84569 6.09484 6.39205 6.59676 6.99414 7.44969 7.50374 8.22744 8.49775 9.40987 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.005755 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.879764 B = 4864.306893 C = 7453.840169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.031 3.969 3 C -0.237 4.237 4 C 0.152 3.848 5 N -0.475 5.475 6 C 0.076 3.924 7 C 0.461 3.539 8 O -0.496 6.496 9 N -0.606 5.606 10 C 0.101 3.899 11 C -0.133 4.133 12 C -0.106 4.106 13 C -0.095 4.095 14 H 0.083 0.917 15 C -0.137 4.137 16 C 0.156 3.844 17 H 0.067 0.933 18 C 0.166 3.834 19 N -0.699 5.699 20 C -0.214 4.214 21 H 0.047 0.953 22 C -0.068 4.068 23 N -0.959 5.959 24 Si 0.955 3.045 25 H -0.295 1.295 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.507 3.493 29 O -0.609 6.609 30 C -0.290 4.290 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.028 0.972 45 H 0.071 0.929 46 H 0.044 0.956 47 H 0.002 0.998 48 H 0.020 0.980 49 H 0.370 0.630 50 H 0.247 0.753 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 -5.468 14.248 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.027 3.973 3 C -0.259 4.259 4 C 0.025 3.975 5 N -0.184 5.184 6 C -0.049 4.049 7 C 0.245 3.755 8 O -0.367 6.367 9 N -0.343 5.343 10 C -0.021 4.021 11 C -0.171 4.171 12 C -0.143 4.143 13 C -0.114 4.114 14 H 0.102 0.898 15 C -0.194 4.194 16 C 0.052 3.948 17 H 0.085 0.915 18 C 0.039 3.961 19 N -0.340 5.340 20 C -0.347 4.347 21 H 0.065 0.935 22 C -0.260 4.260 23 N -0.612 5.612 24 Si 0.786 3.214 25 H -0.223 1.223 26 H -0.215 1.215 27 H -0.209 1.209 28 C 0.313 3.687 29 O -0.497 6.497 30 C -0.311 4.311 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.183 0.817 35 H 0.194 0.806 36 H 0.144 0.856 37 H 0.169 0.831 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.019 0.981 48 H 0.038 0.962 49 H 0.202 0.798 50 H 0.056 0.944 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.602 -6.175 13.583 16.316 hybrid contribution -0.999 0.394 -0.914 1.410 sum 5.603 -5.780 12.669 15.010 Atomic orbital electron populations 1.21011 0.87864 1.04178 1.04531 1.20579 0.98591 0.91887 0.86209 1.20895 0.92532 0.99813 1.12657 1.22319 0.94393 0.89556 0.91249 1.44994 1.08169 1.06982 1.58226 1.22012 0.78797 1.07983 0.96136 1.21084 0.83467 0.79330 0.91577 1.91134 1.56119 1.45093 1.44383 1.47873 1.04683 1.74034 1.07682 1.22025 0.91068 1.00173 0.88820 1.21956 0.99067 0.97913 0.98148 1.21509 0.96249 1.03165 0.93377 1.21459 0.95647 0.93601 1.00732 0.89848 1.21764 0.99618 0.97265 1.00746 1.21313 0.94013 0.98363 0.81112 0.91498 1.20902 0.90565 0.90589 0.94048 1.42166 1.34097 1.20752 1.37023 1.19317 1.06371 1.01797 1.07227 0.93482 1.25126 1.01916 0.97834 1.01104 1.69748 1.43020 1.11992 1.36401 0.85404 0.80525 0.76500 0.78979 1.22317 1.21529 1.20870 1.17397 0.90186 0.82513 0.78640 1.90843 1.70194 1.31739 1.56919 1.21893 0.91798 1.00443 1.17013 0.87607 0.89896 0.90584 0.81665 0.80583 0.85553 0.83145 0.88596 0.89562 0.92440 0.87828 0.90028 0.90654 0.95304 0.90997 0.93743 0.98080 0.96225 0.79820 0.94426 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 10.03 71.24 0.71 -1.67 16 2 C 0.03 0.90 5.89 -19.82 -0.12 0.78 16 3 C -0.24 -6.80 9.71 22.08 0.21 -6.58 16 4 C 0.15 4.70 10.28 83.42 0.86 5.56 16 5 N -0.48 -16.26 2.07 -655.07 -1.36 -17.62 16 6 C 0.08 2.20 4.23 85.64 0.36 2.56 16 7 C 0.46 17.13 7.16 87.66 0.63 17.76 16 8 O -0.50 -24.53 10.29 -3.04 -0.03 -24.56 16 9 N -0.61 -18.15 2.41 -795.03 -1.92 -20.07 16 10 C 0.10 1.88 6.32 86.36 0.55 2.43 16 11 C -0.13 -2.14 5.74 30.67 0.18 -1.96 16 12 C -0.11 -1.83 5.43 30.62 0.17 -1.67 16 13 C -0.09 -2.41 2.79 -10.72 -0.03 -2.44 16 14 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 15 C -0.14 -3.87 8.22 71.98 0.59 -3.28 16 16 C 0.16 5.18 2.62 44.97 0.12 5.29 16 17 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 18 C 0.17 7.54 4.05 86.38 0.35 7.88 16 19 N -0.70 -37.85 3.25 -343.45 -1.12 -38.97 16 20 C -0.21 -13.00 9.75 84.03 0.82 -12.18 16 21 H 0.05 2.92 7.83 -2.91 -0.02 2.90 16 22 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 23 N -0.96 -58.08 13.06 21.65 0.28 -57.80 16 24 Si 0.95 48.88 29.55 68.60 2.03 50.91 16 25 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 26 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 28 C 0.51 20.00 7.40 84.82 0.63 20.63 16 29 O -0.61 -27.64 16.64 -5.53 -0.09 -27.73 16 30 C -0.29 -9.93 9.65 22.40 0.22 -9.71 16 31 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 34 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.18 4.80 8.03 -2.91 -0.02 4.78 16 36 H 0.13 3.41 6.69 -2.39 -0.02 3.40 16 37 H 0.15 3.02 7.99 -2.39 -0.02 3.00 16 38 H 0.10 1.43 5.97 -2.39 -0.01 1.42 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.12 6.34 -2.39 -0.02 1.11 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.03 0.97 6.57 -2.39 -0.02 0.96 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.04 1.37 5.97 -2.39 -0.01 1.36 16 47 H 0.00 0.07 8.12 -2.39 -0.02 0.05 16 48 H 0.02 1.03 5.06 -2.39 -0.01 1.02 16 49 H 0.37 20.71 7.09 -92.70 -0.66 20.05 16 50 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 51 H 0.15 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -85.13 394.79 4.78 -80.34 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.28 Total: 35.66 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 6.71 Total: 19.83 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -4.11 Total: -134.45 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -0.12 Total: -52.29 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -85.13 4.78 -80.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482496645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.797 kcal (2) G-P(sol) polarization free energy of solvation -85.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds