Wall clock time and date at job start Wed Apr 1 2020 04:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99687 * 2 1 4 4 C 1.53005 * 109.47031 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47204 * 65.00256 * 4 3 2 6 6 C 1.36939 * 119.99529 * 270.00029 * 5 4 3 7 7 H 1.07998 * 119.99887 * 139.07359 * 6 5 4 8 8 C 1.38818 * 120.00087 * 319.06557 * 6 5 4 9 9 N 1.31613 * 119.99714 * 340.13710 * 8 6 5 10 10 Si 1.86799 * 119.99761 * 160.13549 * 8 6 5 11 11 H 1.48498 * 109.47194 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47154 * 120.00390 * 10 8 6 13 13 H 1.48499 * 109.46870 * 240.00253 * 10 8 6 14 14 C 1.46496 * 120.00225 * 89.99883 * 5 4 3 15 15 C 1.53045 * 109.45864 * 243.08258 * 14 5 4 16 16 C 1.53190 * 109.30937 * 178.61500 * 15 14 5 17 17 N 1.46924 * 108.77693 * 54.63546 * 16 15 14 18 18 C 1.34777 * 120.62830 * 126.37155 * 17 16 15 19 19 O 1.21553 * 120.00076 * 354.92217 * 18 17 16 20 20 C 1.47843 * 120.00053 * 174.65723 * 18 17 16 21 21 C 1.39560 * 120.55691 * 310.18443 * 20 18 17 22 22 N 1.31671 * 120.56333 * 179.76979 * 21 20 18 23 23 C 1.31953 * 121.87863 * 0.49671 * 22 21 20 24 24 C 1.38309 * 121.08377 * 359.76514 * 23 22 21 25 25 C 1.38395 * 119.30249 * 359.97438 * 24 23 22 26 26 C 1.50707 * 120.85439 * 179.97438 * 25 24 23 27 27 C 1.46921 * 118.73793 * 306.64147 * 17 16 15 28 28 C 1.52758 * 109.00917 * 53.31025 * 27 17 16 29 29 H 1.09006 * 109.46681 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46839 * 299.99395 * 1 2 3 31 31 H 1.08990 * 109.47398 * 59.99767 * 1 2 3 32 32 H 1.09002 * 109.47376 * 60.00572 * 3 2 1 33 33 H 1.08999 * 109.47490 * 299.99986 * 3 2 1 34 34 H 1.08998 * 109.46808 * 304.99937 * 4 3 2 35 35 H 1.09002 * 109.46703 * 185.00326 * 4 3 2 36 36 H 0.97004 * 119.99672 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.46056 * 3.05443 * 14 5 4 38 38 H 1.09001 * 109.49641 * 58.66792 * 15 14 5 39 39 H 1.09001 * 109.52206 * 298.58124 * 15 14 5 40 40 H 1.09008 * 109.58943 * 294.84636 * 16 15 14 41 41 H 1.09001 * 109.70333 * 174.49611 * 16 15 14 42 42 H 1.07996 * 119.71763 * 359.97438 * 21 20 18 43 43 H 1.08001 * 119.45941 * 179.74639 * 23 22 21 44 44 H 1.07996 * 120.35039 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.47000 * 270.12312 * 26 25 24 46 46 H 1.09000 * 109.46580 * 30.12220 * 26 25 24 47 47 H 1.09002 * 109.46494 * 150.11830 * 26 25 24 48 48 H 1.09004 * 109.58407 * 173.14510 * 27 17 16 49 49 H 1.08997 * 109.59033 * 293.56482 * 27 17 16 50 50 H 1.09004 * 109.56272 * 185.55024 * 28 27 17 51 51 H 1.09005 * 109.36115 * 65.49936 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.0968 -0.7968 -1.3368 7 1 3.7709 -1.3139 -2.2272 8 6 4.6385 -1.5122 -0.2777 9 7 5.3808 -0.8987 0.6194 10 14 4.3140 -3.3455 -0.1260 11 1 3.4571 -3.7916 -1.2538 12 1 5.6033 -4.0813 -0.1634 13 1 3.6239 -3.6212 1.1597 14 6 4.2863 1.4008 -2.4148 15 6 3.3173 1.0723 -3.5529 16 6 3.6229 1.9727 -4.7541 17 7 5.0413 1.8245 -5.1074 18 6 5.4060 1.5065 -6.3654 19 8 4.5580 1.2490 -7.1973 20 6 6.8372 1.4766 -6.7350 21 6 7.6726 2.5506 -6.4249 22 7 8.9482 2.5222 -6.7499 23 6 9.4833 1.4956 -7.3830 24 6 8.7213 0.3948 -7.7304 25 6 7.3759 0.3730 -7.4067 26 6 6.5129 -0.8082 -7.7690 27 6 6.0543 2.0237 -4.0621 28 6 5.7218 1.1283 -2.8699 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1767 0.0890 36 1 5.7590 -1.3986 1.3597 37 1 4.1849 2.4516 -2.1435 38 1 2.2937 1.2445 -3.2203 39 1 3.4354 0.0279 -3.8417 40 1 3.4177 3.0112 -4.4940 41 1 3.0027 1.6787 -5.6009 42 1 7.2701 3.4110 -5.9110 43 1 10.5335 1.5152 -7.6343 44 1 9.1716 -0.4392 -8.2481 45 1 6.0826 -0.6540 -8.7584 46 1 7.1198 -1.7136 -7.7738 47 1 5.7123 -0.9113 -7.0365 48 1 7.0379 1.7610 -4.4516 49 1 6.0515 3.0663 -3.7444 50 1 6.4095 1.3402 -2.0513 51 1 5.8177 0.0833 -3.1650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569455674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:13 Heat of formation + Delta-G solvation = -18.313472 kcal Electronic energy + Delta-G solvation = -32088.109340 eV Core-core repulsion = 27988.468428 eV Total energy + Delta-G solvation = -4099.640912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.92720 -39.28504 -37.64473 -36.85871 -34.99264 -33.97622 -32.47730 -31.53866 -30.63462 -30.35623 -28.28494 -27.88326 -25.67946 -25.32329 -24.18226 -23.07165 -22.94566 -22.13224 -20.86725 -20.05260 -19.00574 -17.54854 -16.75035 -16.48859 -16.28444 -15.91495 -15.67457 -15.07367 -14.87824 -14.81389 -14.51112 -14.13920 -14.03430 -13.93587 -13.73675 -13.50033 -13.23729 -13.13103 -12.95418 -12.83110 -12.61770 -12.32646 -11.91737 -11.86784 -11.78454 -11.55527 -11.39497 -10.92997 -10.79859 -10.74636 -10.67819 -10.46160 -10.20008 -10.03004 -9.88894 -9.80882 -9.65093 -9.50379 -9.47519 -9.17658 -8.83784 -8.43448 -8.36563 -6.47266 -5.70992 -3.30034 0.67003 1.04287 2.70847 3.09420 3.42528 3.50938 3.54582 3.62889 4.19442 4.45314 4.53087 4.54828 4.59555 4.67081 4.88035 5.17367 5.19358 5.23423 5.34112 5.39518 5.47827 5.50589 5.53830 5.55459 5.70458 5.70830 5.72635 5.77434 5.78711 5.95570 5.97706 6.01802 6.06831 6.11740 6.13024 6.14149 6.27739 6.39237 6.42391 6.45901 6.60886 6.67368 6.69830 6.83352 7.10216 7.19315 7.51501 7.61177 7.72227 7.92595 8.06255 8.20279 8.63329 9.25893 9.88252 10.45878 11.30460 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012674 B = 0.003283 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.678648 B = 8525.834497 C = 9250.538365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.046 3.954 4 C 0.148 3.852 5 N -0.571 5.571 6 C -0.234 4.234 7 H 0.053 0.947 8 C 0.022 3.978 9 N -0.892 5.892 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.289 1.289 14 C 0.177 3.823 15 C -0.139 4.139 16 C 0.114 3.886 17 N -0.595 5.595 18 C 0.565 3.435 19 O -0.540 6.540 20 C -0.177 4.177 21 C 0.137 3.863 22 N -0.491 5.491 23 C 0.115 3.885 24 C -0.180 4.180 25 C 0.007 3.993 26 C -0.119 4.119 27 C 0.102 3.898 28 C -0.131 4.131 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.027 0.973 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.251 0.749 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.140 0.860 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.075 0.925 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 6.755 -11.241 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C -0.033 4.033 4 C 0.021 3.979 5 N -0.290 5.290 6 C -0.364 4.364 7 H 0.071 0.929 8 C -0.178 4.178 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.070 3.930 15 C -0.179 4.179 16 C -0.008 4.008 17 N -0.327 5.327 18 C 0.352 3.648 19 O -0.418 6.418 20 C -0.182 4.182 21 C -0.021 4.021 22 N -0.200 5.200 23 C -0.041 4.041 24 C -0.200 4.200 25 C -0.001 4.001 26 C -0.175 4.175 27 C -0.021 4.021 28 C -0.171 4.171 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.177 0.823 43 H 0.176 0.824 44 H 0.158 0.842 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.094 0.906 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.602 7.092 -11.280 13.576 hybrid contribution -0.941 -1.461 0.122 1.742 sum 1.660 5.631 -11.158 12.608 Atomic orbital electron populations 1.22627 0.84296 1.01454 0.98370 1.88218 1.16490 1.27675 1.94808 1.23464 0.98986 0.84106 0.96758 1.20972 0.87356 0.96477 0.93068 1.43689 1.75328 1.02690 1.07304 1.18700 1.33694 0.81543 1.02447 0.92930 1.25095 0.95993 0.97364 0.99325 1.69979 1.32759 1.35414 1.15296 0.86400 0.77250 0.86231 0.77812 1.20285 1.22205 1.21561 1.20332 0.91079 0.93428 0.88175 1.22382 1.00538 1.00080 0.94944 1.21726 0.80409 0.99697 0.99008 1.48093 1.08280 1.67906 1.08383 1.18050 0.87529 0.76913 0.82334 1.90758 1.51996 1.49379 1.49688 1.20890 0.95425 0.97710 1.04182 1.22974 0.88534 0.96652 0.93985 1.67707 1.12741 1.27240 1.12272 1.22905 1.00306 0.88541 0.92362 1.22008 0.93847 1.00814 1.03309 1.20388 0.94165 0.94442 0.91100 1.20891 0.99130 0.94150 1.03355 1.21997 0.90844 1.00335 0.88919 1.22180 0.99637 0.99966 0.95317 0.90774 0.95585 0.95311 0.95892 0.95464 0.88486 0.94228 0.93900 0.93548 0.91571 0.91334 0.91863 0.89645 0.82250 0.82376 0.84204 0.89717 0.90894 0.90446 0.90592 0.91550 0.90617 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.56 10.18 -35.23 -0.36 -7.92 16 3 C 0.05 0.89 6.28 37.16 0.23 1.12 16 4 C 0.15 3.24 5.70 -4.04 -0.02 3.21 16 5 N -0.57 -12.93 2.32 -165.62 -0.38 -13.31 16 6 C -0.23 -6.03 7.61 -15.06 -0.11 -6.14 16 7 H 0.05 1.42 7.05 -52.49 -0.37 1.05 16 8 C 0.02 0.59 4.96 -17.43 -0.09 0.51 16 9 N -0.89 -24.78 11.62 55.49 0.64 -24.13 16 10 Si 0.89 21.93 29.60 -169.99 -5.03 16.90 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 C 0.18 3.31 2.60 -67.89 -0.18 3.14 16 15 C -0.14 -2.41 5.35 -26.61 -0.14 -2.56 16 16 C 0.11 1.68 6.44 -3.71 -0.02 1.66 16 17 N -0.59 -8.81 2.98 -174.15 -0.52 -9.33 16 18 C 0.56 8.77 6.35 -12.33 -0.08 8.69 16 19 O -0.54 -9.73 15.28 5.32 0.08 -9.65 16 20 C -0.18 -2.41 4.78 -104.82 -0.50 -2.91 16 21 C 0.14 1.69 8.79 -17.13 -0.15 1.54 16 22 N -0.49 -6.03 10.35 -12.91 -0.13 -6.17 16 23 C 0.11 1.16 11.17 -17.47 -0.20 0.97 16 24 C -0.18 -1.80 9.81 -39.50 -0.39 -2.19 16 25 C 0.01 0.09 5.95 -103.91 -0.62 -0.53 16 26 C -0.12 -1.39 9.16 36.01 0.33 -1.06 16 27 C 0.10 1.43 5.33 -3.94 -0.02 1.41 16 28 C -0.13 -2.36 5.24 -26.84 -0.14 -2.50 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 2.49 5.71 -51.93 -0.30 2.19 16 35 H 0.04 0.79 7.90 -51.93 -0.41 0.38 16 36 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.05 0.81 7.77 -51.93 -0.40 0.40 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.37 7.19 -51.93 -0.37 1.00 16 40 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.09 1.32 6.99 -51.93 -0.36 0.95 16 42 H 0.16 1.72 7.45 -52.49 -0.39 1.33 16 43 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.08 1.08 6.88 -51.93 -0.36 0.72 16 48 H 0.08 1.03 5.20 -51.93 -0.27 0.76 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 51 H 0.07 1.49 7.65 -51.93 -0.40 1.10 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -31.09 403.89 -8.86 -39.95 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.26 Total: 1.59 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.98 Total: 5.98 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.39 Total: -52.93 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.28 Total: -17.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.09 -8.86 -39.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569455674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.637 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds